Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Reverse (-)

387188 .. 388400

Gene Structure 1213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGCAAGGATCTGAGCGACGATCAGGTCTCGTCGATGAAGGAGGCGTTCACGCTGTTCGACACGGACAACGACGGCAAGATCGCCCCGTCGGAATTGGGGATCCTAATGCGGTCCCTCGGCGGCAACCCGACCCAGGCCCAACTCAAATCCATAGTGGCGGAGGAGAAGCTGACGGCGCCGTTCGACTTCAAGCGGTTCCTGGAGCTGATGAGCAAGCACATGAAGCCGGAGCCCTTCGATCGCCAGCTCCGCGACGCCTTCAAGGTCCTCGACAAGGACGCCACCGGCTTCGTCTCCGTCTCGGAGCTCCGCCACATCCTCACCAGCATCGGCGAGAAATTGGAGCCGTCCGAGTTCGACGAGTGGATCCGCGAGGTCGATGTCGGCAAAGATGGCAAGATCAAATACGACGACTTCATCGCCAGAATGGTCGCCAAGCCCTTCAGCCTTAAATCTAGTGCTTGTTGCCAGTTATGGACAGTGGAAATCATTGTGCAGGTGACTGCAGGACCTGGAGAACCAAGTTGGGTAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03010 ko04626 map03010 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

180

Amino Acids

20.0

Weight (kDa)

4.95

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	12 - 54	3.4e-06	EF-hand domain pair
EF-hand_6	PF13405	13 - 41	7.2e-07	EF-hand domain
EF-hand_1	PF00036	13 - 40	4.4e-06	EF hand domain
EF-hand_7	PF13499	82 - 144	2.5e-16	EF-hand domain pair
EF-hand_6	PF13405	83 - 112	2e-07	EF-hand domain
EF-hand_9	PF14658	87 - 144	8.1e-06	EF-hand domain
EF-hand_8	PF13833	99 - 145	5.9e-06	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
AasI	GACNNNNNNGTC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	178
AccII	CGCG	2 cut(s)	255, 375
AciI	CCGC	7 cut(s)	112, 123, 161, 196, 253, 313, 373
AclWI	GGATC	5 cut(s)	18, 97, 110, 364, 377
AcuI	CTGAAG	1 cut(s)	430
AcyI	GRCGYC	3 cut(s)	179, 258, 282
AfiI	CCNNNNNNNGG	2 cut(s)	136, 277
AgsI	TTSAA	2 cut(s)	193, 265
AjnI	CCWGG	3 cut(s)	135, 201, 514
AluBI	AGCT	4 cut(s)	172, 208, 250, 310
AluI	AGCT	4 cut(s)	172, 208, 250, 310
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	3 cut(s)	34, 301, 307
AlwI	GGATC	5 cut(s)	18, 97, 110, 364, 377
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	4 cut(s)	114, 139, 268, 512
AsuHPI	GGTGA	2 cut(s)	316, 514
AvaII	GGWCC	3 cut(s)	114, 268, 512
BamHI	GGATCC	2 cut(s)	102, 369
BanI	GGYRCC	1 cut(s)	178
BanII	GRGCYC	2 cut(s)	237, 312
Bbv12I	GWGCWC	1 cut(s)	312
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	4 cut(s)	91, 166, 192, 334
BciT130I	CCWGG	3 cut(s)	137, 203, 516
BcoDI	GTCTC	3 cut(s)	34, 301, 307
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	490
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	3 cut(s)	137, 203, 516
Bme18I	GGWCC	3 cut(s)	114, 268, 512
BmgT120I	GGNCC	4 cut(s)	114, 139, 268, 512
BmiI	GGNNCC	7 cut(s)	104, 116, 180, 200, 234, 348, 371
BmrFI	CCNGG	3 cut(s)	137, 203, 516
BmsI	GCATC	1 cut(s)	339
BpmI	CTGGAG	2 cut(s)	224, 537
BsaHI	GRCGYC	3 cut(s)	179, 258, 282
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	118, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 277
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	3 cut(s)	137, 203, 516
BseDI	CCNNGG	2 cut(s)	118, 135
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	136, 277
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	2 cut(s)	255, 375
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	2 cut(s)	230, 288
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	136, 277
BsmAI	GTCTC	3 cut(s)	34, 301, 307
BsmBI	CGTCTC	2 cut(s)	301, 307
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	237, 312
Bsp143I	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
BspACI	CCGC	7 cut(s)	112, 123, 161, 196, 253, 313, 373
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	2 cut(s)	255, 375
BspLI	GGNNCC	7 cut(s)	104, 116, 180, 200, 234, 348, 371
BspMAI	CTGCAG	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	5 cut(s)	18, 97, 110, 364, 377
BspT107I	GGYRCC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	118, 135
BssMI	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
BssNI	GRCGYC	3 cut(s)	179, 258, 282
Bst2UI	CCWGG	3 cut(s)	137, 203, 516
Bst4CI	ACNGT	1 cut(s)	484
BstACI	GRCGYC	3 cut(s)	179, 258, 282
BstC8I	GCNNGC	2 cut(s)	218, 248
BstDEI	CTNAG	1 cut(s)	14
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	2 cut(s)	255, 375
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	7 cut(s)	13, 25, 84, 105, 244, 372, 405
BstMAI	GTCTC	3 cut(s)	34, 301, 307
BstMBI	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 226, 252, 396
BstNI	CCWGG	3 cut(s)	137, 203, 516
BstSCI	CCNGG	3 cut(s)	135, 201, 514
BstSFI	CTRYAG	1 cut(s)	507
BstUI	CGCG	2 cut(s)	255, 375
BstX2I	RGATCY	3 cut(s)	10, 102, 369
BstYI	RGATCY	3 cut(s)	10, 102, 369
BsuRI	GGCC	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	489
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	2 cut(s)	218, 248
CaiI	CAGNNNCTG	1 cut(s)	515
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	4 cut(s)	114, 139, 268, 512
CseI	GACGC	2 cut(s)	266, 290
CviAII	CATG	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	14
DinI	GGCGCC	1 cut(s)	180
DpnI	GATC	7 cut(s)	12, 24, 83, 104, 243, 371, 404
DpnII	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
EciI	GGCGGA	2 cut(s)	176, 302
Ecl136II	GAGCTC	1 cut(s)	310
Eco24I	GRGCYC	2 cut(s)	237, 312
Eco31I	GGTCTC	1 cut(s)	34
Eco47I	GGWCC	3 cut(s)	114, 268, 512
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	310
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO109I	RGGNCCY	2 cut(s)	268, 512
EcoRII	CCWGG	3 cut(s)	135, 201, 514
EcoT38I	GRGCYC	2 cut(s)	237, 312
EgeI	GGCGCC	1 cut(s)	180
EheI	GGCGCC	1 cut(s)	180
Esp3I	CGTCTC	2 cut(s)	301, 307
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	155, 224, 478
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	2 cut(s)	237, 312
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	2 cut(s)	224, 537
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	2 cut(s)	230, 288
HgaI	GACGC	2 cut(s)	266, 290
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	3 cut(s)	179, 258, 282
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	230, 288
HphI	GGTGA	2 cut(s)	316, 514
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	4 cut(s)	15, 94, 307, 355
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	7 cut(s)	23, 37, 77, 94, 260, 365, 416
HpyAV	CCTTC	4 cut(s)	34, 247, 271, 454
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	2 cut(s)	499, 509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 226, 252, 396
HpyF3I	CTNAG	1 cut(s)	14
Hsp92I	GRCGYC	3 cut(s)	179, 258, 282
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	1 cut(s)	179
KasI	GGCGCC	1 cut(s)	178
Kzo9I	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
LmnI	GCTCC	6 cut(s)	205, 232, 255, 307, 315, 346
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	7 cut(s)	12, 24, 83, 104, 243, 371, 404
MboI	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
MflI	RGATCY	3 cut(s)	10, 102, 369
MhlI	GDGCHC	2 cut(s)	237, 312
MluCI	AATT	2 cut(s)	95, 341
Mly113I	GGCGCC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	37, 128, 157, 281, 332, 370
MseI	TTAA	1 cut(s)	453
MspI	CCGG	2 cut(s)	230, 288
MspR9I	CCNGG	3 cut(s)	137, 203, 516
MvaI	CCWGG	3 cut(s)	137, 203, 516
MvnI	CGCG	2 cut(s)	255, 375
MwoI	GCNNNNNNNGC	4 cut(s)	178, 226, 252, 396
NarI	GGCGCC	1 cut(s)	179
NdeII	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	7 cut(s)	104, 116, 180, 200, 234, 348, 371
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	502
PaqCI	CACCTGC	1 cut(s)	490
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	125
Ple19I	CGATCG	1 cut(s)	244
PluTI	GGCGCC	1 cut(s)	182
PpuMI	RGGWCCY	2 cut(s)	268, 512
Psp124BI	GAGCTC	1 cut(s)	312
Psp5II	RGGWCCY	2 cut(s)	268, 512
Psp6I	CCWGG	3 cut(s)	135, 201, 514
PspGI	CCWGG	3 cut(s)	135, 201, 514
PspN4I	GGNNCC	7 cut(s)	104, 116, 180, 200, 234, 348, 371
PspPI	GGNCC	4 cut(s)	114, 139, 268, 512
PspPPI	RGGWCCY	2 cut(s)	268, 512
PstI	CTGCAG	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	3 cut(s)	10, 102, 369
PvuI	CGATCG	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
Sau96I	GGNCC	4 cut(s)	114, 139, 268, 512
ScrFI	CCNGG	3 cut(s)	137, 203, 516
SduI	GDGCHC	2 cut(s)	237, 312
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	1 cut(s)	507
SfoI	GGCGCC	1 cut(s)	180
SinI	GGWCC	3 cut(s)	114, 268, 512
Sse9I	AATT	2 cut(s)	95, 341
SsiI	CCGC	7 cut(s)	112, 123, 161, 196, 253, 313, 373
SspDI	GGCGCC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	135, 201, 514
TaaI	ACNGT	1 cut(s)	484
TaqI	TCGA	7 cut(s)	35, 60, 186, 240, 273, 360, 381
TasI	AATT	2 cut(s)	95, 341
TauI	GCSGC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	3 cut(s)	53, 239, 409
TspGWI	ACGGA	2 cut(s)	80, 289
TspRI	CASTG	1 cut(s)	489
VpaK11BI	GGWCC	3 cut(s)	114, 268, 512
XagI	CCTNNNNNAGG	1 cut(s)	275
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.