Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Reverse (-)

11855438 .. 11856007

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027458

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCCGATCAGCTATCCCCCGACCAGAAGTCAAAGTTCAAGGAGGCGTTCGGCCTTTTCGACAAGGACGGCGATGGCTCCATCACTACCAGAGAGCTCGGCACTGTGATGCGCTCACTTGGGCAGAACCCGACGGAAGAAGAGCTTCAAGATATGATCAACGAGGTTGATGCTGATGGAAGCGGTACCATTGAATGCCAAGAGTTCCTTGAACTGATGGCCAAAAAGATTAAAGGCACTGATTCCGATGAGCAGCTCAAGGAAGCGTTTCGGGTGTTTGATAAGGACCAGAATGGCTTCATTTCTGCCGCCGAGCTCCGTCATGTCCTGACGAATCTCGGCGAGAAGCTGACAGATGAGGAGCTTGCTGAGATGGTTAGGGAGGCTGATTTGGATAGTGATGGACAAATCAACTATGAGGAGTTTGTCAAAGTTATGGTGGCCAAAAGAGGACGAAGCCGGAGCAGCGCGCACGGTAACATGAATTCTTCTTCAAGGGAACACAAGACTAAGAACGGCCGTACTAAGCAGCGTATACGCCAATATGTTTCTGCCTGTAGTGTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0015630 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

190

Amino Acids

21.22

Weight (kDa)

4.98

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIF-1	PF21008	9 - 76	2.5e-07	Allograft inflammatory factor 1
EF-hand_7	PF13499	11 - 73	1.2e-15	EF-hand domain pair
EF-hand_1	PF00036	12 - 40	1.8e-07	EF hand domain
EF-hand_6	PF13405	12 - 41	9e-08	EF-hand domain
EF-hand_9	PF14658	15 - 77	2.8e-08	EF-hand domain
EF-hand_8	PF13833	25 - 75	4.2e-10	EF-hand domain pair
EF-hand_1	PF00036	48 - 75	3e-07	EF hand domain
EF-hand_7	PF13499	84 - 146	2e-20	EF-hand domain pair
AIF-1	PF21008	84 - 150	2.7e-07	Allograft inflammatory factor 1
EF-hand_6	PF13405	85 - 114	2.7e-09	EF-hand domain
EF-hand_1	PF00036	86 - 112	2.5e-08	EF hand domain
EF-hand_5	PF13202	86 - 109	3.3e-06	EF hand
EF-hand_9	PF14658	88 - 147	6.6e-06	EF-hand domain
EF-hand_8	PF13833	98 - 147	2.3e-11	EF-hand domain pair
EF-hand_1	PF00036	121 - 147	4.3e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	535
AccII	CGCG	1 cut(s)	470
AciI	CCGC	2 cut(s)	183, 309
AcoI	YGGCCR	4 cut(s)	3, 219, 441, 517
AcsI	RAATTY	1 cut(s)	484
AfaI	GTAC	2 cut(s)	187, 523
AgsI	TTSAA	5 cut(s)	40, 149, 194, 212, 495
AhdI	GACNNNNNGTC	1 cut(s)	28
AluBI	AGCT	7 cut(s)	13, 97, 145, 256, 316, 349, 364
AluI	AGCT	7 cut(s)	13, 97, 145, 256, 316, 349, 364
Alw21I	GWGCWC	2 cut(s)	99, 318
AoxI	GGCC	5 cut(s)	3, 52, 219, 441, 517
ApeKI	GCWGC	3 cut(s)	253, 465, 529
ApoI	RAATTY	1 cut(s)	484
Asp700I	GAANNNNTTC	3 cut(s)	144, 267, 296
Asp718I	GGTACC	1 cut(s)	185
AspLEI	GCGC	3 cut(s)	114, 470, 472
AspS9I	GGNCC	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	286
BalI	TGGCCA	2 cut(s)	221, 443
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	99, 318
Bbv12I	GWGCWC	2 cut(s)	99, 318
BbvI	GCAGC	3 cut(s)	265, 477, 541
BccI	CCATC	6 cut(s)	68, 89, 170, 211, 367, 395
BceAI	ACGGC	3 cut(s)	85, 504, 532
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BclI	TGATCA	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	556
BisI	GCNGC	4 cut(s)	254, 309, 466, 530
BlsI	GCNGC	4 cut(s)	255, 310, 467, 531
Bme18I	GGWCC	1 cut(s)	286
BmeRI	GACNNNNNGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	79, 187
BmsI	GCATC	2 cut(s)	99, 160
BpuEI	CTTGAG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	360
BsePI	GCGCGC	1 cut(s)	468
BseRI	GAGGAG	2 cut(s)	374, 434
BseX3I	CGGCCG	1 cut(s)	517
BseXI	GCAGC	3 cut(s)	265, 477, 541
Bsh1236I	CGCG	1 cut(s)	470
Bsh1285I	CGRYCG	1 cut(s)	520
BshFI	GGCC	5 cut(s)	5, 54, 221, 443, 519
BshNI	GGYRCC	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	520
BsiHKAI	GWGCWC	2 cut(s)	99, 318
BsiSI	CCGG	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	5 cut(s)	5, 54, 221, 443, 519
Bsp1286I	GDGCHC	2 cut(s)	99, 318
Bsp143I	GATC	2 cut(s)	7, 156
BspACI	CCGC	2 cut(s)	183, 309
BspANI	GGCC	5 cut(s)	5, 54, 221, 443, 519
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	470
BspLI	GGNNCC	2 cut(s)	79, 187
BspQI	GCTCTTC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	185
BssHII	GCGCGC	1 cut(s)	468
BssMI	GATC	2 cut(s)	7, 156
BssNAI	GTATAC	1 cut(s)	536
Bst1107I	GTATAC	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	106, 476
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	366, 470
BstDEI	CTNAG	3 cut(s)	369, 510, 525
BstFNI	CGCG	1 cut(s)	470
BstHHI	GCGC	3 cut(s)	114, 470, 472
BstKTI	GATC	2 cut(s)	10, 159
BstMBI	GATC	2 cut(s)	7, 156
BstMCI	CGRYCG	1 cut(s)	520
BstMWI	GCNNNNNNNGC	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	556
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	3 cut(s)	265, 477, 541
BstZ17I	GTATAC	1 cut(s)	536
BstZI	CGGCCG	1 cut(s)	517
BsuRI	GGCC	5 cut(s)	5, 54, 221, 443, 519
BtgZI	GCGATG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	102, 237
Cac8I	GCNNGC	2 cut(s)	366, 470
CfoI	GCGC	3 cut(s)	114, 470, 472
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	186, 522
CviAII	CATG	2 cut(s)	323, 481
CviQI	GTAC	2 cut(s)	186, 522
DdeI	CTNAG	3 cut(s)	369, 510, 525
DpnI	GATC	2 cut(s)	9, 158
DpnII	GATC	2 cut(s)	7, 156
DriI	GACNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	4 cut(s)	3, 219, 441, 517
EagI	CGGCCG	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	2 cut(s)	97, 316
EclXI	CGGCCG	1 cut(s)	517
Eco24I	GRGCYC	2 cut(s)	99, 318
Eco47I	GGWCC	1 cut(s)	286
Eco52I	CGGCCG	1 cut(s)	517
Eco53kI	GAGCTC	2 cut(s)	97, 316
EcoICRI	GAGCTC	2 cut(s)	97, 316
EcoRI	GAATTC	1 cut(s)	484
EcoT38I	GRGCYC	2 cut(s)	99, 318
FaeI	CATG	2 cut(s)	326, 484
FaiI	YATR	7 cut(s)	155, 324, 417, 437, 482, 536, 546
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 192, 224
FatI	CATG	2 cut(s)	322, 480
FbaI	TGATCA	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	254, 309, 466, 530
FriOI	GRGCYC	2 cut(s)	99, 318
Fsp4HI	GCNGC	4 cut(s)	254, 309, 466, 530
GlaI	GCGC	3 cut(s)	113, 469, 471
GluI	GCNGC	4 cut(s)	254, 309, 466, 530
HaeIII	GGCC	5 cut(s)	5, 54, 221, 443, 519
HapII	CCGG	1 cut(s)	460
HhaI	GCGC	3 cut(s)	114, 470, 472
Hin1II	CATG	2 cut(s)	326, 484
Hin6I	GCGC	3 cut(s)	112, 468, 470
HinP1I	GCGC	3 cut(s)	112, 468, 470
HinfI	GANTC	2 cut(s)	242, 334
HpaII	CCGG	1 cut(s)	460
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	149, 328
Hpy8I	GTNNAC	1 cut(s)	536
Hpy99I	CGWCG	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	106, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	465
HpyF3I	CTNAG	3 cut(s)	369, 510, 525
Hsp92II	CATG	2 cut(s)	326, 484
HspAI	GCGC	3 cut(s)	112, 468, 470
KpnI	GGTACC	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	7, 156
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	4 cut(s)	83, 321, 361, 462
LpnPI	CCDG	5 cut(s)	38, 103, 302, 341, 473
Lsp1109I	GCAGC	3 cut(s)	265, 477, 541
LweI	GCATC	2 cut(s)	99, 160
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	2 cut(s)	9, 158
MboI	GATC	2 cut(s)	7, 156
MboII	GAAGA	4 cut(s)	149, 152, 480, 483
MhlI	GDGCHC	2 cut(s)	99, 318
MlsI	TGGCCA	2 cut(s)	221, 443
MluCI	AATT	1 cut(s)	484
MluNI	TGGCCA	2 cut(s)	221, 443
MnlI	CCTC	6 cut(s)	37, 157, 352, 376, 412, 443
Mox20I	TGGCCA	2 cut(s)	221, 443
MroXI	GAANNNNTTC	3 cut(s)	144, 267, 296
MscI	TGGCCA	2 cut(s)	221, 443
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	107
Msp20I	TGGCCA	2 cut(s)	221, 443
MspI	CCGG	1 cut(s)	460
Mva1269I	GAATGC	1 cut(s)	200
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	1 cut(s)	465
NdeII	GATC	2 cut(s)	7, 156
NlaIII	CATG	2 cut(s)	326, 484
NlaIV	GGNNCC	2 cut(s)	79, 187
NmeAIII	GCCGAG	3 cut(s)	78, 318, 337
PauI	GCGCGC	1 cut(s)	468
PciSI	GCTCTTC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	200
PdmI	GAANNNNTTC	3 cut(s)	144, 267, 296
PfeI	GAWTC	2 cut(s)	242, 334
PkrI	GCNGC	4 cut(s)	255, 310, 467, 531
Psp124BI	GAGCTC	2 cut(s)	99, 318
PspN4I	GGNNCC	2 cut(s)	79, 187
PspPI	GGNCC	1 cut(s)	286
PteI	GCGCGC	1 cut(s)	468
RsaI	GTAC	2 cut(s)	187, 523
RsaNI	GTAC	2 cut(s)	186, 522
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	2 cut(s)	99, 318
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	4 cut(s)	254, 309, 466, 530
Sau3AI	GATC	2 cut(s)	7, 156
Sau96I	GGNCC	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	99, 318
SetI	ASST	8 cut(s)	15, 99, 147, 168, 258, 318, 351, 366
SfaNI	GCATC	2 cut(s)	99, 160
SfcI	CTRYAG	1 cut(s)	556
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	484
SsiI	CCGC	2 cut(s)	183, 309
SstI	GAGCTC	2 cut(s)	99, 318
TaaI	ACNGT	2 cut(s)	106, 476
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	484
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	242, 334
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	109, 244
TseI	GCWGC	3 cut(s)	253, 465, 529
TspDTI	ATGAA	2 cut(s)	289, 497
TspGWI	ACGGA	2 cut(s)	149, 308
TspRI	CASTG	2 cut(s)	109, 244
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	3 cut(s)	144, 267, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.