Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000126.1

Orthogroup ID

OG0007715

Physical Location & Seq

Genomic Coordinates Forward (+)

281086 .. 282357

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000126.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgggcggtctccactgtaaatggcggtttcccaacacccgctttaaccgtcatttgtgtcgtctaccctcctctcctccatttccaccattctcaacaaacacttcactactattctctccattatcacaacccaaaatcactaccaacgacagaactgctggtgttggatttacggcaacaaacactagaagtagaagtagaggtctcagacctctgttctctctccctcaaaatcaacaaacccagcaagtacaagaagacaacgaaccaaacaatgaagaagaagatgaggacatttcccaaggccgtggcaatgggaactggacaatagtactatcatccagcttggttggtctcctcaccggcctcggtgtcgttctcttcaactactcagtgcatgagataagagaggtgttttgggatgggatacctcaaagaggagcttcatggctgagagaggagcccattactgatatgtggcagcgagtgattctggttccggcttccgggggtttgattgtggccattttgaatgtgcttagaggtgcattggatgatgaacaaggagaagaaaatgaagaagaagagaatgtattggtgaaaatgggaatgcccgtttcggtttttgatagcttgaaggctgcgtcacgtccatttcttaaggctgttgctgcttgtgtcactctgggaactgggaattctttaggtccggaagggcctagtgttgagattgggacctccattgccagaggtgtaggttctgtgtttgatagaagttcgcagagaaagctctctcttgtggctgctggatcagctgctggaattgcttctggattcaatgctgctgtttcgggatgcttctttgcggtagagtcagtcctatggccatcaccagcggattcttcttcatcatctgtttcgcttacaaataccacttctatggtcattctcagtgcagtgatagcttctgttgttacacaagttggtcttggttctgaaccagcattcaaggtcccaggctatgacttccgctcacctagtggtacactctcacatatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

354

Amino Acids

37.79

Weight (kDa)

5.37

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35440 AT4G35440
fragaria_vesca	FvH4_2g17250 FvH4_2g17250 FvH4_2g17250 FvH4_2g17250 FvH4_2g17250
malus_domestica	MD10G1145500.v1.1
prunus_persica	Prupe.8G183800_v2.0.a1 Prupe.8G183800_v2.0.a1 Prupe.8G183800_v2.0.a1
pyrus_communis	pycom10g12560
rosa_chinensis	RchiOBHm_Chr6g0281741
rosa_laevigata	RLG00000012939
rosa_multiflora	Rmu_sc0008470.1_g000002 Rmu_ssc0000126.1_g000061 Rmu_ssc0000126.1_g000062
rosa_roxburghii	Rroxscaffold_7G00186860
rosa_rugosa	Rorug06G0143500
rosa_samantha	Rh6AG255900 Rh6BG259000 Rh6CG257900 Rh6DG250000
rosa_wichuraiana	Rw6G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1035
AccI	GTMKAC	1 cut(s)	64
AccIII	TCCGGA	1 cut(s)	712
AciI	CCGC	6 cut(s)	6, 25, 40, 869, 899, 1033
AclWI	GGATC	1 cut(s)	820
AcoI	YGGCCR	2 cut(s)	525, 887
AcsI	RAATTY	1 cut(s)	700
AdeI	CACNNNGTG	1 cut(s)	1043
AfaI	GTAC	3 cut(s)	255, 336, 1048
AfiI	CCNNNNNNNGG	2 cut(s)	440, 509
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	5 cut(s)	388, 535, 640, 841, 1012
AjiI	CACGTC	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	1018
AluBI	AGCT	6 cut(s)	348, 446, 636, 793, 818, 968
AluI	AGCT	6 cut(s)	348, 446, 636, 793, 818, 968
Alw26I	GTCTC	3 cut(s)	14, 212, 362
AlwI	GGATC	1 cut(s)	820
AlwNI	CAGNNNCTG	1 cut(s)	821
Aor13HI	TCCGGA	1 cut(s)	712
AoxI	GGCC	5 cut(s)	307, 367, 525, 719, 887
ApeKI	GCWGC	6 cut(s)	484, 644, 674, 806, 818, 845
ApoI	RAATTY	1 cut(s)	700
Asp700I	GAANNNNTTC	1 cut(s)	829
AspS9I	GGNCC	4 cut(s)	710, 719, 738, 1015
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	4 cut(s)	355, 613, 885, 1029
AvaII	GGWCC	3 cut(s)	710, 738, 1015
BalI	TGGCCA	2 cut(s)	527, 889
BanII	GRGCYC	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	6 cut(s)	496, 631, 661, 793, 805, 832
BccI	CCATC	2 cut(s)	419, 898
BceAI	ACGGC	2 cut(s)	192, 294
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	1020
BciVI	GTATCC	1 cut(s)	423
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	3 cut(s)	14, 212, 362
BfaI	CTAG	3 cut(s)	189, 723, 1041
BfrI	CTTAAG	1 cut(s)	662
BfuI	GTATCC	1 cut(s)	423
BisI	GCNGC	6 cut(s)	485, 645, 675, 807, 819, 846
BlsI	GCNGC	6 cut(s)	486, 646, 676, 808, 820, 847
BmcAI	AGTACT	1 cut(s)	336
Bme1390I	CCNGG	2 cut(s)	511, 1020
Bme18I	GGWCC	3 cut(s)	710, 738, 1015
BmgBI	CACGTC	1 cut(s)	653
BmgT120I	GGNCC	4 cut(s)	710, 719, 738, 1015
BmiI	GGNNCC	4 cut(s)	465, 501, 739, 1017
BmrFI	CCNGG	2 cut(s)	511, 1020
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	848
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	511
BsaI	GGTCTC	3 cut(s)	14, 212, 362
BsaJI	CCNNGG	5 cut(s)	304, 310, 370, 510, 1018
BsaWI	WCCGGW	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	2 cut(s)	440, 509
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	329, 700
Bse3DI	GCAATG	2 cut(s)	322, 744
BseAI	TCCGGA	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	1020
BseDI	CCNNGG	5 cut(s)	304, 310, 370, 510, 1018
BseGI	GGATG	4 cut(s)	341, 430, 562, 863
BseLI	CCNNNNNNNGG	2 cut(s)	440, 509
BseMI	GCAATG	2 cut(s)	322, 744
BseMII	CTCAG	4 cut(s)	223, 408, 446, 967
BseNI	ACTGG	2 cut(s)	329, 700
BseRI	GAGGAG	5 cut(s)	61, 66, 350, 456, 476
BseXI	GCAGC	6 cut(s)	496, 631, 661, 793, 805, 832
BseYI	CCCAGC	1 cut(s)	246
BsgI	GTGCAG	1 cut(s)	978
BshFI	GGCC	5 cut(s)	309, 369, 527, 721, 889
BsiSI	CCGG	4 cut(s)	366, 503, 510, 713
BslFI	GGGAC	2 cut(s)	751, 1001
BslI	CCNNNNNNNGG	2 cut(s)	440, 509
BsmAI	GTCTC	3 cut(s)	14, 212, 362
BsmFI	GGGAC	2 cut(s)	751, 1001
BsmI	GAATGC	2 cut(s)	618, 1007
BsnI	GGCC	5 cut(s)	309, 369, 527, 721, 889
Bso31I	GGTCTC	3 cut(s)	14, 212, 362
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp13I	TCCGGA	1 cut(s)	712
Bsp143I	GATC	1 cut(s)	812
BspACI	CCGC	6 cut(s)	6, 25, 40, 869, 899, 1033
BspANI	GGCC	5 cut(s)	309, 369, 527, 721, 889
BspCNI	CTCAG	4 cut(s)	222, 407, 447, 966
BspEI	TCCGGA	1 cut(s)	712
BspLI	GGNNCC	4 cut(s)	465, 501, 739, 1017
BspPI	GGATC	1 cut(s)	820
BspTI	CTTAAG	1 cut(s)	662
BspTNI	GGTCTC	3 cut(s)	14, 212, 362
BsrBI	CCGCTC	1 cut(s)	1035
BsrDI	GCAATG	2 cut(s)	322, 744
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	329, 700
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	5 cut(s)	304, 310, 370, 510, 1018
BssMI	GATC	1 cut(s)	812
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	1020
Bst4CI	ACNGT	2 cut(s)	17, 50
Bst6I	CTCTTC	2 cut(s)	389, 582
BstAFI	CTTAAG	1 cut(s)	662
BstDEI	CTNAG	5 cut(s)	209, 394, 455, 542, 953
BstDSI	CCRYGG	1 cut(s)	310
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstF5I	GGATG	4 cut(s)	341, 430, 562, 863
BstKTI	GATC	1 cut(s)	815
BstMAI	GTCTC	3 cut(s)	14, 212, 362
BstMBI	GATC	1 cut(s)	812
BstMWI	GCNNNNNNNGC	5 cut(s)	674, 790, 815, 827, 965
BstNI	CCWGG	1 cut(s)	1020
BstSCI	CCNGG	2 cut(s)	509, 1018
BstV1I	GCAGC	6 cut(s)	496, 631, 661, 793, 805, 832
BstV2I	GAAGAC	1 cut(s)	267
BstXI	CCANNNNNNTGG	2 cut(s)	311, 943
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	5 cut(s)	309, 369, 527, 721, 889
BtgI	CCRYGG	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	653
BtsCI	GGATG	4 cut(s)	341, 430, 562, 863
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	4 cut(s)	13, 402, 961, 966
CaiI	CAGNNNCTG	1 cut(s)	821
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	4 cut(s)	710, 719, 738, 1015
CseI	GACGC	1 cut(s)	636
Csp6I	GTAC	3 cut(s)	254, 335, 1047
CviAII	CATG	2 cut(s)	401, 450
CviQI	GTAC	3 cut(s)	254, 335, 1047
DdeI	CTNAG	5 cut(s)	209, 394, 455, 542, 953
DpnI	GATC	1 cut(s)	814
DpnII	GATC	1 cut(s)	812
DraIII	CACNNNGTG	1 cut(s)	1043
EaeI	YGGCCR	2 cut(s)	525, 887
Eam1104I	CTCTTC	2 cut(s)	389, 582
EarI	CTCTTC	2 cut(s)	389, 582
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	3 cut(s)	14, 212, 362
Eco47I	GGWCC	3 cut(s)	710, 738, 1015
EcoNI	CCTNNNNNAGG	1 cut(s)	438
EcoO109I	RGGNCCY	3 cut(s)	719, 738, 1015
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	1018
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	2 cut(s)	404, 453
FaiI	YATR	9 cut(s)	402, 451, 479, 886, 944, 1026, 1059, 1061, 1063
FalI	AAGNNNNNCTT	4 cut(s)	430, 462, 975, 1007
FaqI	GGGAC	2 cut(s)	751, 1001
FatI	CATG	2 cut(s)	400, 449
FauI	CCCGC	1 cut(s)	47
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	6 cut(s)	485, 645, 675, 807, 819, 846
FokI	GGATG	4 cut(s)	328, 437, 569, 870
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	6 cut(s)	485, 645, 675, 807, 819, 846
FspBI	CTAG	3 cut(s)	189, 723, 1041
GluI	GCNGC	6 cut(s)	485, 645, 675, 807, 819, 846
GsaI	CCCAGC	1 cut(s)	250
HaeIII	GGCC	5 cut(s)	309, 369, 527, 721, 889
HapII	CCGG	4 cut(s)	366, 503, 510, 713
HgaI	GACGC	1 cut(s)	636
Hin1II	CATG	2 cut(s)	404, 453
HinfI	GANTC	4 cut(s)	493, 837, 875, 902
HpaII	CCGG	4 cut(s)	366, 503, 510, 713
HphI	GGTGA	4 cut(s)	355, 613, 885, 1029
Hpy166II	GTNNAC	2 cut(s)	65, 1049
Hpy188I	TCNGA	2 cut(s)	212, 1000
Hpy188III	TCNNGA	3 cut(s)	713, 834, 855
Hpy8I	GTNNAC	2 cut(s)	65, 1049
HpyAV	CCTTC	2 cut(s)	634, 710
HpyCH4III	ACNGT	2 cut(s)	17, 50
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	3 cut(s)	400, 551, 959
HpyF10VI	GCNNNNNNNGC	5 cut(s)	674, 790, 815, 827, 965
HpyF3I	CTNAG	5 cut(s)	209, 394, 455, 542, 953
HpySE526I	ACGT	1 cut(s)	652
Hsp92II	CATG	2 cut(s)	404, 453
Kpn2I	TCCGGA	1 cut(s)	712
Kzo9I	GATC	1 cut(s)	812
LmnI	GCTCC	2 cut(s)	443, 463
Lsp1109I	GCAGC	6 cut(s)	496, 631, 661, 793, 805, 832
LweI	GCATC	1 cut(s)	848
MaeI	CTAG	3 cut(s)	189, 723, 1041
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	3 cut(s)	648, 682, 976
MalI	GATC	1 cut(s)	814
MbiI	CCGCTC	1 cut(s)	1035
MboI	GATC	1 cut(s)	812
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	2 cut(s)	527, 889
MluCI	AATT	2 cut(s)	700, 825
MluNI	TGGCCA	2 cut(s)	527, 889
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	1 cut(s)	148
Mox20I	TGGCCA	2 cut(s)	527, 889
MroI	TCCGGA	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	829
MscI	TGGCCA	2 cut(s)	527, 889
MseI	TTAA	2 cut(s)	45, 663
MslI	CAYNNNNRTG	2 cut(s)	941, 1060
Msp20I	TGGCCA	2 cut(s)	527, 889
MspA1I	CMGCKG	2 cut(s)	818, 899
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	4 cut(s)	366, 503, 510, 713
MspR9I	CCNGG	2 cut(s)	511, 1020
Mva1269I	GAATGC	2 cut(s)	618, 1007
MvaI	CCWGG	1 cut(s)	1020
MwoI	GCNNNNNNNGC	5 cut(s)	674, 790, 815, 827, 965
NciI	CCSGG	1 cut(s)	511
NdeII	GATC	1 cut(s)	812
NlaIII	CATG	2 cut(s)	404, 453
NlaIV	GGNNCC	4 cut(s)	465, 501, 739, 1017
NmuCI	GTSAC	2 cut(s)	648, 682
PctI	GAATGC	2 cut(s)	618, 1007
PdmI	GAANNNNTTC	1 cut(s)	829
PfeI	GAWTC	3 cut(s)	493, 837, 902
PkrI	GCNGC	6 cut(s)	486, 646, 676, 808, 820, 847
PleI	GAGTC	1 cut(s)	883
PpsI	GAGTC	1 cut(s)	883
PpuMI	RGGWCCY	2 cut(s)	738, 1015
Psp5II	RGGWCCY	2 cut(s)	738, 1015
Psp6I	CCWGG	1 cut(s)	1018
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	1018
PspN4I	GGNNCC	4 cut(s)	465, 501, 739, 1017
PspPI	GGNCC	4 cut(s)	710, 719, 738, 1015
PspPPI	RGGWCCY	2 cut(s)	738, 1015
PstNI	CAGNNNCTG	1 cut(s)	821
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	3 cut(s)	255, 336, 1048
RsaNI	GTAC	3 cut(s)	254, 335, 1047
RseI	CAYNNNNRTG	2 cut(s)	941, 1060
SaqAI	TTAA	2 cut(s)	45, 663
SatI	GCNGC	6 cut(s)	485, 645, 675, 807, 819, 846
Sau3AI	GATC	1 cut(s)	812
Sau96I	GGNCC	4 cut(s)	710, 719, 738, 1015
ScaI	AGTACT	1 cut(s)	336
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	2 cut(s)	511, 1020
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	1 cut(s)	848
SinI	GGWCC	3 cut(s)	710, 738, 1015
SmiMI	CAYNNNNRTG	2 cut(s)	941, 1060
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
Sse9I	AATT	2 cut(s)	700, 825
SsiI	CCGC	6 cut(s)	6, 25, 40, 869, 899, 1033
SspMI	CTAG	3 cut(s)	189, 723, 1041
StyD4I	CCNGG	2 cut(s)	509, 1018
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	17, 50
TaiI	ACGT	1 cut(s)	655
TasI	AATT	2 cut(s)	700, 825
TatI	WGTACW	2 cut(s)	253, 334
TfiI	GAWTC	3 cut(s)	493, 837, 902
Tru1I	TTAA	2 cut(s)	45, 663
Tru9I	TTAA	2 cut(s)	45, 663
TscAI	CASTG	4 cut(s)	20, 402, 961, 966
TseFI	GTSAC	2 cut(s)	648, 682
TseI	GCWGC	6 cut(s)	484, 644, 674, 806, 818, 845
Tsp45I	GTSAC	2 cut(s)	648, 682
TspDTI	ATGAA	5 cut(s)	294, 438, 576, 594, 900
TspRI	CASTG	4 cut(s)	20, 402, 961, 966
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	3 cut(s)	710, 738, 1015
XagI	CCTNNNNNAGG	1 cut(s)	438
XapI	RAATTY	1 cut(s)	700
XmiI	GTMKAC	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	829
XspI	CTAG	3 cut(s)	189, 723, 1041
ZrmI	AGTACT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.