Rorug06G0143500

Belongs to the histone deacetylase family. HD Type 1 subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001215
Physical Location & Seq
Forward (+)
20382551 .. 20392179
9629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0143500.1

Sequence Viewer

Length: 1968 bp
ATGGCTTCGGCGGCAAAGAAACCCTCTCACGTCCAAGACTTGGCGGCGTTTCTGATACGCCACCAGTCTGACCAACTTCGCTCCATCGCTCTCTCCCCAGACCCCAAGCTTCACTACCCCCTCTACGTCAATTTTGCAGAGCTCATGGATGACGATCCTCCGCTGGCACAGCTCGTCTTCTCCCAACCCACCGAGTACTTGCGCTTTCTCGATGAGGCCGCCCTTTGGGCTCATAAAGTTGTATTGGAGGATTTGCAAGGTTTGGGTAAAGGGGTGAAGAAGGAATTCATTCATGTTCGCATTGATGTCAGCGGATCACCACTTGAATGCCCTGAGACTTTTCCGAGCATTGGACGTGTGAGGGTGAAGCATCGTGGGATTCTGCTAACCCTCAAAGGGACGGTGATTCGGTCCGGGACAATTAAGATGTATGAAGGGGAGAGGAAGTATATGTGCCAGAAATGCAAGCACGAATTCCTTGTTTATCCTGAGCTGGAATCGAGAAACTCCATAAGACTACCATCATATTGCCCCTCTCAGACTAAAGCCTGTGAAGGCACAAAGTTTGCGCATTTGGAAGGTTCTATATCATGCCATGATTACCAGGAAATCAAAATCCAGGAGAGTACCCATGTCTTGGGTGTTGGAGCCATTCCGCGCTCAATTCCTGTCATTCTAAAAGATGATCTTGTTGATATTGTTAAAGCTGGAGATGACATAATCGTTACTGGGATATTAACTGCAAAGTGGTCTCCAGACTTGAAAGATGTGCGATGCGACCTTGATCCTGTATTGGTTGCTAACTGCGTTAGGAGAACTAATGAGCTGAAGTCGGAAATTGATATACCCGATGATGTTATCACAAAATTCAAGCAGTTCTGGTCAGACTTCAAAGATACACCTTTGAAAGGGAGAAATGCCATCCTACAAGGAATATGCCCACAAATCTTTGGACTGTTTACTGTAAAGCTTGCAGTTGCATTAACACTTATTGGAGGCGTGCAACATGTTGATGCTTCTGGGACAAAGGTTCGAGGAGAGTCTCATTTGCTTTTGGTTGGTGATCCAGGCACTGGAAAATCTCAGTTCTTAAAGTTTGCTGCAAAGTTGAGCAACCGATCTGTTATTACAACTGGATTAGGAAGCACAAGCGCTGGATTAACTGTTACTGCAGTCAAGGATGGTGGTGAGTGGATGTTGGAAGCTGGAGCCCTTGTTTTGGCAGATGGAGGGATTTGTTGTATAGATGAGTTTGATAGCATGAGAGAACACGATAGGGCAACCATACATGAAGCAATGGAGCAGCAGACAATAAGTGTCGCCAAGGCTGGTCTTGTGACAACTCTGAGTACTAAAACGATTGTTTTTGGAGCAACAAATCCAAAGGGCCAGTATGATCCTGATCAATCTCTGTCCGTTAATACGGCACTCTCGGGTCCCTTACTGAGCCGATTTGATATAGTCCTTGTACTCTTGGATACAAAGAATCCTGAATGGGATGGAGTTGTGTCATCTCACATCCTTTCTGAGGGAGAACCAGACAAAGGCAAGCAGGACGAAAATTTAGCAGACACCTGGCCGTTTCCTATGCTGCGTAGATATATTCACTTTGTTAAAGGGTTCTTCAAACCAGTCCTTACGAAGGAGGCTGAGATAGTTATCTCCAGCTATTATCAACTCCAAAGAAAATCTGCAACAGACAATGCAGCGAGGACAACTGTGCGTATGCTTGAAAGTTTGATACGCCTAGCACAAGCACATGCAAGGCTGATGTTCAGAAATGAGGTGACTAGGTTAGATGCCATTACAGCCATTTTATGTATTGAATCATCCATGACTACTTCAGCCATTGTGGACAGTGTCGGAAATGCTCTGCATTCAAATTTCACCGAGAACCCTGATATGGAATATGCCAAGCAAGAAGAACTGATCCTCGAAAAGCTTAGATCATTCGATGAGTTCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0002376 GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009405 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044764 GO:0045087 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098542 GO:0098732 GO:0140096 GO:1901564 GO:1902459 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000036 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

655

Amino Acids

72.46

Weight (kDa)

6.02

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCM9_N PF26066 12 - 101 2.7e-10 MCM9, N-terminal domain
MCM_OB PF17207 120 - 247 2.6e-22 MCM OB domain
MCM PF00493 306 - 509 1.2e-73 MCM P-loop domain
AAA_5 PF07728 349 - 465 1.4e-07 AAA domain (dynein-related subfamily)
MCM_lid PF17855 530 - 611 1.5e-18 MCM AAA-lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 570
AccB7I CCANNNNNTGG 3 cut(s) 40, 637, 1073
AccII CGCG 1 cut(s) 658
AciI CCGC 6 cut(s) 11, 44, 161, 219, 312, 656
AclWI GGATC 6 cut(s) 149, 322, 779, 1058, 1391, 1924
AcoI YGGCCR 1 cut(s) 1577
AcsI RAATTY 5 cut(s) 284, 473, 866, 1561, 1882
AcuI CTGAAG 2 cut(s) 848, 1827
AfaI GTAC 4 cut(s) 197, 628, 1351, 1470
AfeI AGCGCT 1 cut(s) 1153
AflIII ACRYGT 2 cut(s) 355, 1006
AgsI TTSAA 9 cut(s) 326, 763, 871, 892, 907, 1627, 1733, 1826, 1881
AjiI CACGTC 2 cut(s) 31, 356
AjnI CCWGG 4 cut(s) 603, 618, 1066, 1574
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 329, 756, 1047
AlwI GGATC 6 cut(s) 149, 322, 779, 1058, 1391, 1924
AlwNI CAGNNNCTG 1 cut(s) 1073
Ama87I CYCGRG 1 cut(s) 1432
Aor51HI AGCGCT 1 cut(s) 1153
AoxI GGCC 3 cut(s) 216, 1387, 1577
ApeKI GCWGC 4 cut(s) 1100, 1303, 1591, 1706
ApoI RAATTY 5 cut(s) 284, 473, 866, 1561, 1882
Asp700I GAANNNNTTC 2 cut(s) 284, 288
AspLEI GCGC 4 cut(s) 204, 571, 660, 1154
AspS9I GGNCC 3 cut(s) 411, 1387, 1436
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 8 cut(s) 286, 309, 376, 415, 1073, 1199, 1798, 1879
AvaI CYCGRG 1 cut(s) 1432
AvaII GGWCC 2 cut(s) 411, 1436
BanII GRGCYC 3 cut(s) 144, 232, 1213
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 4 cut(s) 1087, 1315, 1578, 1718
BccI CCATC 6 cut(s) 92, 529, 929, 1175, 1220, 1493
BceAI ACGGC 2 cut(s) 1440, 1564
BciT130I CCWGG 4 cut(s) 605, 620, 1068, 1576
BciVI GTATCC 1 cut(s) 1471
BclI TGATCA 1 cut(s) 1402
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 3 cut(s) 329, 756, 1047
BfaI CTAG 2 cut(s) 1748, 1791
BfmI CTRYAG 1 cut(s) 1170
BfoI RGCGCY 1 cut(s) 1155
BfuI GTATCC 1 cut(s) 1471
BglI GCCNNNNNGGC 1 cut(s) 227
BisI GCNGC 7 cut(s) 12, 45, 219, 1101, 1304, 1592, 1707
BlsI GCNGC 7 cut(s) 13, 46, 220, 1102, 1305, 1593, 1708
BmcAI AGTACT 2 cut(s) 197, 1351
Bme1390I CCNGG 5 cut(s) 415, 605, 620, 1068, 1576
Bme18I GGWCC 2 cut(s) 411, 1436
BmeT110I CYCGRG 1 cut(s) 1432
BmgBI CACGTC 2 cut(s) 31, 356
BmgT120I GGNCC 3 cut(s) 411, 1387, 1436
BmiI GGNNCC 4 cut(s) 649, 1210, 1437, 1438
BmrFI CCNGG 5 cut(s) 415, 605, 620, 1068, 1576
BmrI ACTGGG 1 cut(s) 738
BmsI GCATC 4 cut(s) 379, 764, 1003, 1789
BmuI ACTGGG 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 169
BpmI CTGGAG 4 cut(s) 729, 738, 1227, 1648
Bpu10I CCTNAGC 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 415
BsaBI GATNNNNATC 3 cut(s) 153, 1401, 1658
BsaI GGTCTC 1 cut(s) 756
BsaJI CCNNGG 1 cut(s) 1323
BsaXI ACNNNNNCTCC 4 cut(s) 431, 461, 1200, 1230
Bse1I ACTGG 6 cut(s) 64, 733, 1078, 1138, 1390, 1631
Bse3DI GCAATG 1 cut(s) 1302
Bse8I GATNNNNATC 3 cut(s) 153, 1401, 1658
BseBI CCWGG 4 cut(s) 605, 620, 1068, 1576
BseDI CCNNGG 1 cut(s) 1323
BseGI GGATG 7 cut(s) 154, 921, 1186, 1200, 1504, 1518, 1829
BseJI GATNNNNATC 3 cut(s) 153, 1401, 1658
BseMI GCAATG 1 cut(s) 1302
BseMII CTCAG 8 cut(s) 324, 480, 551, 1097, 1337, 1436, 1518, 1641
BseNI ACTGG 6 cut(s) 64, 733, 1078, 1138, 1390, 1631
BseRI GAGGAG 1 cut(s) 1050
BseXI GCAGC 4 cut(s) 1087, 1315, 1578, 1718
Bsh1236I CGCG 1 cut(s) 658
BshFI GGCC 3 cut(s) 218, 1389, 1579
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 1432
BsiSI CCGG 1 cut(s) 414
BslFI GGGAC 4 cut(s) 412, 430, 1036, 1422
BsmAI GTCTC 3 cut(s) 329, 756, 1047
BsmFI GGGAC 4 cut(s) 412, 430, 1036, 1422
BsmI GAATGC 2 cut(s) 332, 1876
BsnI GGCC 3 cut(s) 218, 1389, 1579
Bso31I GGTCTC 1 cut(s) 756
BsoBI CYCGRG 1 cut(s) 1432
Bsp1286I GDGCHC 3 cut(s) 144, 232, 1213
BspACI CCGC 6 cut(s) 11, 44, 161, 219, 312, 656
BspANI GGCC 3 cut(s) 218, 1389, 1579
BspCNI CTCAG 8 cut(s) 325, 481, 550, 1096, 1338, 1437, 1519, 1642
BspFNI CGCG 1 cut(s) 658
BspLI GGNNCC 4 cut(s) 649, 1210, 1437, 1438
BspMAI CTGCAG 1 cut(s) 1174
BspPI GGATC 6 cut(s) 149, 322, 779, 1058, 1391, 1924
BspTNI GGTCTC 1 cut(s) 756
BsrDI GCAATG 1 cut(s) 1302
BsrI ACTGG 6 cut(s) 64, 733, 1078, 1138, 1390, 1631
BssECI CCNNGG 1 cut(s) 1323
BssT1I CCWWGG 1 cut(s) 1323
Bst2UI CCWGG 4 cut(s) 605, 620, 1068, 1576
Bst4CI ACNGT 6 cut(s) 403, 957, 964, 1165, 1720, 1859
BstC8I GCNNGC 5 cut(s) 165, 467, 972, 1001, 1550
BstDEI CTNAG 9 cut(s) 333, 489, 537, 1083, 1346, 1445, 1527, 1650, 1943
BstENI CCTNNNNNAGG 3 cut(s) 906, 1526, 1640
BstF5I GGATG 7 cut(s) 154, 921, 1186, 1200, 1504, 1518, 1829
BstFNI CGCG 1 cut(s) 658
BstH2I RGCGCY 1 cut(s) 1155
BstHHI GCGC 4 cut(s) 204, 571, 660, 1154
BstMAI GTCTC 3 cut(s) 329, 756, 1047
BstMWI GCNNNNNNNGC 5 cut(s) 11, 169, 227, 462, 1808
BstNI CCWGG 4 cut(s) 605, 620, 1068, 1576
BstNSI RCATGY 2 cut(s) 1010, 1763
BstSCI CCNGG 5 cut(s) 413, 603, 618, 1066, 1574
BstSFI CTRYAG 1 cut(s) 1170
BstUI CGCG 1 cut(s) 658
BstV1I GCAGC 4 cut(s) 1087, 1315, 1578, 1718
BstV2I GAAGAC 1 cut(s) 169
BsuI GTATCC 1 cut(s) 1471
BsuRI GGCC 3 cut(s) 218, 1389, 1579
BtgZI GCGATG 2 cut(s) 70, 787
BtrI CACGTC 2 cut(s) 31, 356
BtsCI GGATG 7 cut(s) 154, 921, 1186, 1200, 1504, 1518, 1829
BtsIMutI CAGTG 2 cut(s) 1071, 1864
Cac8I GCNNGC 5 cut(s) 165, 467, 972, 1001, 1550
CaiI CAGNNNCTG 1 cut(s) 1073
CfoI GCGC 4 cut(s) 204, 571, 660, 1154
Cfr13I GGNCC 3 cut(s) 411, 1387, 1436
CpoI CGGWCCG 1 cut(s) 411
Csp6I GTAC 4 cut(s) 196, 627, 1350, 1469
CspCI CAANNNNNGTGG 2 cut(s) 1165, 1200
CspI CGGWCCG 1 cut(s) 411
CviQI GTAC 4 cut(s) 196, 627, 1350, 1469
DdeI CTNAG 9 cut(s) 333, 489, 537, 1083, 1346, 1445, 1527, 1650, 1943
EaeI YGGCCR 1 cut(s) 1577
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 1323
Eco24I GRGCYC 3 cut(s) 144, 232, 1213
Eco31I GGTCTC 1 cut(s) 756
Eco47I GGWCC 2 cut(s) 411, 1436
Eco47III AGCGCT 1 cut(s) 1153
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 848, 1827
Eco88I CYCGRG 1 cut(s) 1432
EcoICRI GAGCTC 1 cut(s) 142
EcoNI CCTNNNNNAGG 3 cut(s) 906, 1526, 1640
EcoO109I RGGNCCY 1 cut(s) 1436
EcoRI GAATTC 2 cut(s) 284, 473
EcoRII CCWGG 4 cut(s) 603, 618, 1066, 1574
EcoT14I CCWWGG 1 cut(s) 1323
EcoT38I GRGCYC 3 cut(s) 144, 232, 1213
ErhI CCWWGG 1 cut(s) 1323
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FaqI GGGAC 4 cut(s) 412, 430, 1036, 1422
FbaI TGATCA 1 cut(s) 1402
Fnu4HI GCNGC 7 cut(s) 12, 45, 219, 1101, 1304, 1592, 1707
FokI GGATG 7 cut(s) 161, 908, 1193, 1207, 1505, 1511, 1816
FriOI GRGCYC 3 cut(s) 144, 232, 1213
Fsp4HI GCNGC 7 cut(s) 12, 45, 219, 1101, 1304, 1592, 1707
FspBI CTAG 2 cut(s) 1748, 1791
FspI TGCGCA 1 cut(s) 570
GlaI GCGC 4 cut(s) 203, 570, 659, 1153
GluI GCNGC 7 cut(s) 12, 45, 219, 1101, 1304, 1592, 1707
GsuI CTGGAG 4 cut(s) 729, 738, 1227, 1648
HaeII RGCGCY 1 cut(s) 1155
HaeIII GGCC 3 cut(s) 218, 1389, 1579
HapII CCGG 1 cut(s) 414
HhaI GCGC 4 cut(s) 204, 571, 660, 1154
Hin6I GCGC 4 cut(s) 202, 569, 658, 1152
HinP1I GCGC 4 cut(s) 202, 569, 658, 1152
HindIII AAGCTT 3 cut(s) 107, 968, 1940
HinfI GANTC 6 cut(s) 379, 406, 497, 1040, 1486, 1826
HpaII CCGG 1 cut(s) 414
HphI GGTGA 8 cut(s) 286, 309, 376, 415, 1073, 1199, 1798, 1879
Hpy166II GTNNAC 2 cut(s) 960, 1855
Hpy188III TCNNGA 6 cut(s) 209, 488, 501, 755, 1400, 1490
Hpy8I GTNNAC 2 cut(s) 960, 1855
HpyAV CCTTC 5 cut(s) 274, 428, 548, 572, 1636
HpyCH4III ACNGT 6 cut(s) 403, 957, 964, 1165, 1720, 1859
HpyCH4IV ACGT 3 cut(s) 30, 126, 355
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 169, 227, 462, 1808
HpyF3I CTNAG 9 cut(s) 333, 489, 537, 1083, 1346, 1445, 1527, 1650, 1943
HpySE526I ACGT 3 cut(s) 30, 126, 355
HspAI GCGC 4 cut(s) 202, 569, 658, 1152
KflI GGGWCCC 1 cut(s) 1436
Ksp22I TGATCA 1 cut(s) 1402
LmnI GCTCC 5 cut(s) 86, 647, 1208, 1300, 1370
Lsp1109I GCAGC 4 cut(s) 1087, 1315, 1578, 1718
LweI GCATC 4 cut(s) 379, 764, 1003, 1789
MaeI CTAG 2 cut(s) 1748, 1791
MaeII ACGT 3 cut(s) 30, 126, 355
MaeIII GTNAC 4 cut(s) 724, 1165, 1336, 1786
MboII GAAGA 4 cut(s) 169, 289, 1615, 1934
MhlI GDGCHC 3 cut(s) 144, 232, 1213
MluCI AATT 9 cut(s) 130, 284, 420, 473, 663, 837, 866, 1561, 1882
MlyI GAGTC 1 cut(s) 1049
MmeI TCCRAC 4 cut(s) 625, 813, 1179, 1843
MroXI GAANNNNTTC 2 cut(s) 284, 288
MseI TTAA 8 cut(s) 423, 702, 737, 983, 1091, 1160, 1419, 1614
MslI CAYNNNNRTG 2 cut(s) 325, 1011
MspA1I CMGCKG 2 cut(s) 163, 312
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 5 cut(s) 415, 605, 620, 1068, 1576
Mva1269I GAATGC 2 cut(s) 332, 1876
MvaI CCWGG 4 cut(s) 605, 620, 1068, 1576
MvnI CGCG 1 cut(s) 658
MwoI GCNNNNNNNGC 5 cut(s) 11, 169, 227, 462, 1808
NciI CCSGG 1 cut(s) 415
NlaIV GGNNCC 4 cut(s) 649, 1210, 1437, 1438
NmuCI GTSAC 2 cut(s) 1336, 1786
NsbI TGCGCA 1 cut(s) 570
NspI RCATGY 2 cut(s) 1010, 1763
PciI ACATGT 1 cut(s) 1006
PctI GAATGC 2 cut(s) 332, 1876
PdmI GAANNNNTTC 2 cut(s) 284, 288
PfeI GAWTC 5 cut(s) 379, 406, 497, 1486, 1826
PflFI GACNNNGTC 1 cut(s) 1859
PflMI CCANNNNNTGG 3 cut(s) 40, 637, 1073
PfoI TCCNGGA 2 cut(s) 413, 618
PkrI GCNGC 7 cut(s) 13, 46, 220, 1102, 1305, 1593, 1708
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
PpuMI RGGWCCY 1 cut(s) 1436
PscI ACATGT 1 cut(s) 1006
Psp124BI GAGCTC 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 1436
Psp6I CCWGG 4 cut(s) 603, 618, 1066, 1574
PspGI CCWGG 4 cut(s) 603, 618, 1066, 1574
PspN4I GGNNCC 4 cut(s) 649, 1210, 1437, 1438
PspPI GGNCC 3 cut(s) 411, 1387, 1436
PspPPI RGGWCCY 1 cut(s) 1436
PstI CTGCAG 1 cut(s) 1174
PstNI CAGNNNCTG 1 cut(s) 1073
PsyI GACNNNGTC 1 cut(s) 1859
RsaI GTAC 4 cut(s) 197, 628, 1351, 1470
RsaNI GTAC 4 cut(s) 196, 627, 1350, 1469
RseI CAYNNNNRTG 2 cut(s) 325, 1011
Rsr2I CGGWCCG 1 cut(s) 411
RsrII CGGWCCG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 8 cut(s) 423, 702, 737, 983, 1091, 1160, 1419, 1614
SatI GCNGC 7 cut(s) 12, 45, 219, 1101, 1304, 1592, 1707
Sau96I GGNCC 3 cut(s) 411, 1387, 1436
ScaI AGTACT 2 cut(s) 197, 1351
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 5 cut(s) 415, 605, 620, 1068, 1576
SduI GDGCHC 3 cut(s) 144, 232, 1213
SfaNI GCATC 4 cut(s) 379, 764, 1003, 1789
SfcI CTRYAG 1 cut(s) 1170
SinI GGWCC 2 cut(s) 411, 1436
SmiMI CAYNNNNRTG 2 cut(s) 325, 1011
Sse9I AATT 9 cut(s) 130, 284, 420, 473, 663, 837, 866, 1561, 1882
SsiI CCGC 6 cut(s) 11, 44, 161, 219, 312, 656
SspMI CTAG 2 cut(s) 1748, 1791
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 5 cut(s) 413, 603, 618, 1066, 1574
StyI CCWWGG 1 cut(s) 1323
TaaI ACNGT 6 cut(s) 403, 957, 964, 1165, 1720, 1859
TaiI ACGT 3 cut(s) 33, 129, 358
TaqI TCGA 5 cut(s) 210, 500, 1033, 1935, 1953
TaqII GACCGA 1 cut(s) 399
TasI AATT 9 cut(s) 130, 284, 420, 473, 663, 837, 866, 1561, 1882
TatI WGTACW 3 cut(s) 195, 1349, 1468
TauI GCSGC 3 cut(s) 14, 47, 221
TfiI GAWTC 5 cut(s) 379, 406, 497, 1486, 1826
Tru1I TTAA 8 cut(s) 423, 702, 737, 983, 1091, 1160, 1419, 1614
Tru9I TTAA 8 cut(s) 423, 702, 737, 983, 1091, 1160, 1419, 1614
TscAI CASTG 2 cut(s) 1078, 1864
TseFI GTSAC 2 cut(s) 1336, 1786
TseI GCWGC 4 cut(s) 1100, 1303, 1591, 1706
Tsp45I GTSAC 2 cut(s) 1336, 1786
TspDTI ATGAA 4 cut(s) 277, 281, 447, 1305
TspGWI ACGGA 1 cut(s) 1405
TspRI CASTG 2 cut(s) 1078, 1864
Tth111I GACNNNGTC 1 cut(s) 1859
Van91I CCANNNNNTGG 3 cut(s) 40, 637, 1073
VpaK11BI GGWCC 2 cut(s) 411, 1436
XagI CCTNNNNNAGG 3 cut(s) 906, 1526, 1640
XapI RAATTY 5 cut(s) 284, 473, 866, 1561, 1882
XceI RCATGY 2 cut(s) 1010, 1763
XmnI GAANNNNTTC 2 cut(s) 284, 288
XspI CTAG 2 cut(s) 1748, 1791
ZrmI AGTACT 2 cut(s) 197, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.