Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

35794837 .. 35795378

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAAAACAGTATGTGTCCTCACATTAGGGTGGCTTCTCTTTGATTCAGAGCTCACTTTCAAGAACATTATGGGGATGATTCTTGCAGTCGTTGGCATGGTGATTTATAGTTGGGCTGTCGAGGCAGAAAAACGGTCTGGCAAACCCGTGTCCCATTCAAAAACCAGCATGACAGAAGAGGAAATTGAACTATTGAAGGCAGGACTGGATACCACTACTGTGAAGGATGTTGAACATGGAGCAACTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

84

Amino Acids

9.24

Weight (kDa)

5.6

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	5 cut(s)	61, 159, 188, 196, 233
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	81, 232
BseNI	ACTGG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	10, 135, 220
Bst6I	CTCTTC	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	81, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	81, 232
CviAII	CATG	3 cut(s)	97, 169, 236
CviJI	RGCY	3 cut(s)	34, 52, 116
CviKI_1	RGCY	3 cut(s)	34, 52, 116
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	3 cut(s)	100, 172, 239
FaiI	YATR	6 cut(s)	13, 71, 98, 108, 170, 237
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	3 cut(s)	96, 168, 235
FokI	GGATG	2 cut(s)	88, 239
FriOI	GRGCYC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	100, 172, 239
HinfI	GANTC	2 cut(s)	44, 79
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	190, 217
HpyCH4III	ACNGT	3 cut(s)	10, 135, 220
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	100, 172, 239
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	4 cut(s)	123, 178, 186, 191
MboII	GAAGA	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	183
MnlI	CCTC	3 cut(s)	29, 115, 172
MslI	CAYNNNNRTG	2 cut(s)	28, 218
MwoI	GCNNNNNNNGC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	100, 172, 239
OliI	CACNNNNGTG	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	44, 79
Psp124BI	GAGCTC	1 cut(s)	54
RseI	CAYNNNNRTG	2 cut(s)	28, 218
SacI	GAGCTC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	1 cut(s)	54
SmiMI	CAYNNNNRTG	2 cut(s)	28, 218
Sse9I	AATT	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	54
TaaI	ACNGT	3 cut(s)	10, 135, 220
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	44, 79
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.