Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014282.1

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

30593 .. 31945

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014282.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgatgaataagtgtggttttcgtgtttggtgtgttttttcagcgaccactttaactgggttccatttttctgtaactgcactcgttggactcgtctccaatgctagcggttattctgcctccaagcatgttcccttttgggagcttctttggttctccatcgttgccaatgtctccatcaccgccatgaacttcagcctcatgctcaactctgtcggcttttaccagatttcgaagttgagcatgattcccgtggtttgtgtgatggaatggattcttaacaacaagcagtattccaaggaggttaaaatgtctgttgtggttgtggttatagatgttggtgtttgtaccatgactgatgtaaaagttaacctcaaaggcttcatatgcgcctgcctagcagttttgtccacttctttccagcaaatttctgttgggtctcttcaaaagaaacagtcacttggatcctttgaattgctgaagctcactttcaagaacattatggggatgattcttgcagttgttggcatggtgatttatagttgggctgtcgaggcagaaaaacagtctggcaaacccgtgtcccattcaaaaaccagcatgacagaagaggaaattgaacttttgaaggcaggactggataccactactgtgaaggatgttgaacatggagcgaataaagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

228

Amino Acids

25.0

Weight (kDa)

8.7

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	108, 183
AclWI	GGATC	2 cut(s)	459, 472
AcsI	RAATTY	1 cut(s)	426
AcuI	CTGAAG	2 cut(s)	178, 500
AfaI	GTAC	1 cut(s)	349
AgsI	TTSAA	7 cut(s)	446, 473, 493, 591, 620, 628, 665
AleI	CACNNNNGTG	1 cut(s)	650
AluBI	AGCT	2 cut(s)	145, 484
AluI	AGCT	2 cut(s)	145, 484
Alw26I	GTCTC	3 cut(s)	100, 178, 444
AlwI	GGATC	2 cut(s)	459, 472
ApoI	RAATTY	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	172, 544
AsuII	TTCGAA	1 cut(s)	233
AsuNHI	GCTAGC	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	464
BccI	CCATC	3 cut(s)	167, 185, 259
BciVI	GTATCC	1 cut(s)	634
BcoDI	GTCTC	3 cut(s)	100, 178, 444
BfaI	CTAG	2 cut(s)	105, 398
BfuI	GTATCC	1 cut(s)	634
BmiI	GGNNCC	2 cut(s)	62, 466
BmrI	ACTGGG	1 cut(s)	66
BmtI	GCTAGC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	252, 297
Bse1I	ACTGG	2 cut(s)	61, 642
BseDI	CCNNGG	2 cut(s)	252, 297
BseGI	GGATG	2 cut(s)	513, 664
BseNI	ACTGG	2 cut(s)	61, 642
BsgI	GTGCAG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	568
BsmAI	GTCTC	3 cut(s)	100, 178, 444
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	568
Bso31I	GGTCTC	1 cut(s)	444
Bsp119I	TTCGAA	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	464
BspACI	CCGC	2 cut(s)	108, 183
BspLI	GGNNCC	2 cut(s)	62, 466
BspOI	GCTAGC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	459, 472
BspT104I	TTCGAA	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	61, 642
BssECI	CCNNGG	2 cut(s)	252, 297
BssMI	GATC	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	3 cut(s)	456, 567, 652
Bst6I	CTCTTC	2 cut(s)	447, 603
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	106, 394
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	513, 664
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	1 cut(s)	467
BstMAI	GTCTC	3 cut(s)	100, 178, 444
BstMBI	GATC	1 cut(s)	464
BstMWI	GCNNNNNNNGC	3 cut(s)	387, 398, 554
BstNSI	RCATGY	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuI	GTATCC	1 cut(s)	634
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	513, 664
Cac8I	GCNNGC	2 cut(s)	106, 394
CfoI	GCGC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	8 cut(s)	128, 187, 202, 244, 352, 529, 601, 668
CviJI	RGCY	6 cut(s)	145, 198, 219, 381, 484, 548
CviKI_1	RGCY	6 cut(s)	145, 198, 219, 381, 484, 548
CviQI	GTAC	1 cut(s)	348
DpnI	GATC	1 cut(s)	466
DpnII	GATC	1 cut(s)	464
Eam1104I	CTCTTC	2 cut(s)	447, 603
EarI	CTCTTC	2 cut(s)	447, 603
Eco130I	CCWWGG	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	444
Eco57I	CTGAAG	2 cut(s)	178, 500
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	8 cut(s)	131, 190, 205, 247, 355, 532, 604, 671
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	8 cut(s)	127, 186, 201, 243, 351, 528, 600, 667
FauNDI	CATATG	1 cut(s)	386
FokI	GGATG	2 cut(s)	520, 671
FspBI	CTAG	2 cut(s)	105, 398
GlaI	GCGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	8 cut(s)	131, 190, 205, 247, 355, 532, 604, 671
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	4 cut(s)	90, 247, 274, 511
HpaI	GTTAAC	1 cut(s)	370
HphI	GGTGA	2 cut(s)	172, 544
Hpy166II	GTNNAC	2 cut(s)	370, 411
Hpy188III	TCNNGA	1 cut(s)	493
Hpy8I	GTNNAC	2 cut(s)	370, 411
HpyAV	CCTTC	2 cut(s)	622, 649
HpyCH4III	ACNGT	3 cut(s)	456, 567, 652
HpyCH4V	TGCA	2 cut(s)	80, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	387, 398, 554
Hsp92II	CATG	8 cut(s)	131, 190, 205, 247, 355, 532, 604, 671
HspAI	GCGC	1 cut(s)	390
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	464
LmnI	GCTCC	2 cut(s)	142, 671
LpnPI	CCDG	8 cut(s)	42, 239, 406, 434, 555, 610, 618, 623
MaeI	CTAG	2 cut(s)	105, 398
MaeIII	GTNAC	2 cut(s)	73, 456
MalI	GATC	1 cut(s)	466
MboI	GATC	1 cut(s)	464
MboII	GAAGA	2 cut(s)	434, 620
MflI	RGATCY	1 cut(s)	464
MluCI	AATT	3 cut(s)	426, 473, 615
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	6 cut(s)	130, 209, 295, 383, 547, 604
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	4 cut(s)	53, 279, 306, 369
MslI	CAYNNNNRTG	2 cut(s)	185, 650
MwoI	GCNNNNNNNGC	3 cut(s)	387, 398, 554
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	1 cut(s)	464
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	8 cut(s)	131, 190, 205, 247, 355, 532, 604, 671
NlaIV	GGNNCC	2 cut(s)	62, 466
NmuCI	GTSAC	1 cut(s)	456
NspI	RCATGY	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	233
OliI	CACNNNNGTG	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	247, 274, 511
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	62, 466
PsuI	RGATCY	1 cut(s)	464
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	2 cut(s)	185, 650
SaqAI	TTAA	4 cut(s)	53, 279, 306, 369
Sau3AI	GATC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	84
SetI	ASST	4 cut(s)	147, 306, 375, 486
SfuI	TTCGAA	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	185, 650
Sse9I	AATT	3 cut(s)	426, 473, 615
SsiI	CCGC	2 cut(s)	108, 183
SspMI	CTAG	2 cut(s)	105, 398
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	3 cut(s)	456, 567, 652
TaqI	TCGA	2 cut(s)	233, 552
TasI	AATT	3 cut(s)	426, 473, 615
TfiI	GAWTC	3 cut(s)	247, 274, 511
Tru1I	TTAA	4 cut(s)	53, 279, 306, 369
Tru9I	TTAA	4 cut(s)	53, 279, 306, 369
TseFI	GTSAC	1 cut(s)	456
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	3 cut(s)	20, 203, 373
XapI	RAATTY	1 cut(s)	426
XceI	RCATGY	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	2 cut(s)	105, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.