Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

18169106 .. 18171021

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14590.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGAAGGAAAAGAAGTCTCCCGTGTCCGATGTGGGAGCTTGGGGGATGAATATTGTGAGCTCTGTGGGCATTATCATGGCCAACAAGCAGCTCATGTCTCCCCACGGCTTTGCTTTCGGCTTCGCTACAACTTTGACTGGATTCCATTTCTCTGTTACTGCTTTGGTCGGTTTGGTGTCGAATGCCACCGGTTACTCTGCATCAAAGCATGTTCCTCTGTGGGAACTTGTTTGGTTCTCACTTGTTGCCAATGCCTCAATCACTGGGATGAACTTGAGCCTCATGCTTAACTCTGTTGGATTTTATCAGATATCGAAGTTGAGCATGATTCCGGTGGTTTGTGTGATGGAATGGATTATTCATGGAAAGCATTTTTCACGGGAAGTCAAGATTGCGGTGGCTGTAGTGGTTGTAGGGGTGGGTATATGTACTGTGACCGATGTGAAGGTCAATGCTAAAGGCTTTCTGTATAAGAACCTTGAAACAATTGTTGATCTGACTTTCTTGTTGATTGAGCAACAGTCAATAGGTTCCTTGCAAAAGAAATACTCGATAGGCTCTTTTGAATTGCTCAGCAAGACGGCTCCCATTCAAGCTCTATCTCTTCTTGTTCTTGGTCCATTCGTTGATTACTTTCTTACCGGAAAACTTCTTACTGATTACAAGTTGTCTACTGGTGCATTTTTTTTCATTCTACTCTCATGCTCCTTAGCAGTGTTTTGCAACATCAGCCAGTACCTCTGCATCGGCCGCTTCTCAGCTGTCTCTTTCCAGGTTTTGGGCCACATGAAAACAGTATGTGTCCTGACTTTGGGGTGGCTACTCTTCGATTCCCAGCTCACATTCAAAAACTTGCTTGGCATGGCTCTAGCTGTTCTTGGCATGATCGTATACAGCTGGGCCGTGGAGGCTGAGAAGCAATCCAAGGTCCTCCCTAGTCATTTGTCAGAAGAGGATCTGAAACCGCTGAAGGAGGGAATGTCAGAGAGTCCATTGAAAGACGTCGTGATTGGCGAGTCCAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

344

Amino Acids

37.39

Weight (kDa)

8.42

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1008
AccB7I	CCANNNNNTGG	1 cut(s)	781
AccI	GTMKAC	2 cut(s)	674, 894
AciI	CCGC	3 cut(s)	398, 754, 968
AclWI	GGATC	1 cut(s)	966
AcoI	YGGCCR	2 cut(s)	81, 751
AcuI	CTGAAG	1 cut(s)	992
AcyI	GRCGYC	1 cut(s)	1005
AfaI	GTAC	2 cut(s)	433, 740
AfiI	CCNNNNNNNGG	2 cut(s)	781, 814
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	485, 569, 596, 850, 1000
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	8 cut(s)	41, 63, 94, 599, 764, 841, 875, 900
AluI	AGCT	8 cut(s)	41, 63, 94, 599, 764, 841, 875, 900
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	3 cut(s)	24, 105, 772
AlwI	GGATC	1 cut(s)	966
AoxI	GGCC	4 cut(s)	81, 751, 784, 903
ApeKI	GCWGC	1 cut(s)	91
AsiGI	ACCGGT	1 cut(s)	191
AspS9I	GGNCC	4 cut(s)	620, 784, 903, 931
AvaII	GGWCC	2 cut(s)	620, 931
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	3 cut(s)	124, 600, 890
BciT130I	CCWGG	1 cut(s)	776
BcoDI	GTCTC	3 cut(s)	24, 105, 772
BfaI	CTAG	2 cut(s)	872, 939
BfmI	CTRYAG	1 cut(s)	405
BglI	GCCNNNNNGGC	1 cut(s)	911
BisI	GCNGC	2 cut(s)	92, 754
BlpI	GCTNAGC	1 cut(s)	575
BlsI	GCNGC	2 cut(s)	93, 755
Bme1390I	CCNGG	1 cut(s)	776
Bme18I	GGWCC	2 cut(s)	620, 931
BmgT120I	GGNCC	4 cut(s)	620, 784, 903, 931
BmiI	GGNNCC	2 cut(s)	535, 588
BmrFI	CCNGG	1 cut(s)	776
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	212, 756
BmuI	ACTGGG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	712
Bpu1102I	GCTNAGC	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	298
BsaHI	GRCGYC	1 cut(s)	1005
BsaJI	CCNNGG	4 cut(s)	106, 906, 927, 1023
BsaWI	WCCGGW	3 cut(s)	191, 334, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	968, 998
Bsc4I	CCNNNNNNNGG	2 cut(s)	781, 814
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	4 cut(s)	145, 271, 682, 736
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	4 cut(s)	106, 906, 927, 1023
BseGI	GGATG	2 cut(s)	54, 276
BseLI	CCNNNNNNNGG	2 cut(s)	781, 814
BseMII	CTCAG	3 cut(s)	589, 774, 906
BseNI	ACTGG	4 cut(s)	145, 271, 682, 736
BseX3I	CGGCCG	1 cut(s)	751
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	2 cut(s)	837, 900
Bsh1285I	CGRYCG	1 cut(s)	754
BshFI	GGCC	4 cut(s)	83, 753, 786, 905
BshTI	ACCGGT	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	754
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	192, 335, 645
BslI	CCNNNNNNNGG	2 cut(s)	781, 814
BsmAI	GTCTC	3 cut(s)	24, 105, 772
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	4 cut(s)	83, 753, 786, 905
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	496, 888, 958
Bsp1720I	GCTNAGC	1 cut(s)	575
BspACI	CCGC	3 cut(s)	398, 754, 968
BspANI	GGCC	4 cut(s)	83, 753, 786, 905
BspCNI	CTCAG	3 cut(s)	588, 773, 907
BspLI	GGNNCC	2 cut(s)	535, 588
BspPI	GGATC	1 cut(s)	966
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	4 cut(s)	145, 271, 682, 736
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	4 cut(s)	106, 906, 927, 1023
BssMI	GATC	3 cut(s)	496, 888, 958
BssNAI	GTATAC	1 cut(s)	895
BssNI	GRCGYC	1 cut(s)	1005
BssT1I	CCWWGG	2 cut(s)	927, 1023
Bst1107I	GTATAC	1 cut(s)	895
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	3 cut(s)	436, 525, 799
Bst6I	CTCTTC	3 cut(s)	612, 833, 948
BstACI	GRCGYC	1 cut(s)	1005
BstDEI	CTNAG	4 cut(s)	575, 712, 760, 915
BstDSI	CCRYGG	2 cut(s)	106, 906
BstF5I	GGATG	2 cut(s)	54, 276
BstKTI	GATC	3 cut(s)	499, 891, 961
BstMAI	GTCTC	3 cut(s)	24, 105, 772
BstMBI	GATC	3 cut(s)	496, 888, 958
BstMCI	CGRYCG	1 cut(s)	754
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 732, 753, 911
BstNI	CCWGG	1 cut(s)	776
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	774
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	958
BstZ17I	GTATAC	1 cut(s)	895
BstZI	CGGCCG	1 cut(s)	751
BsuRI	GGCC	4 cut(s)	83, 753, 786, 905
BtgI	CCRYGG	2 cut(s)	106, 906
BtsCI	GGATG	2 cut(s)	54, 276
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	2 cut(s)	264, 723
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	4 cut(s)	620, 784, 903, 931
Csp6I	GTAC	2 cut(s)	432, 739
CspAI	ACCGGT	1 cut(s)	191
CviQI	GTAC	2 cut(s)	432, 739
DdeI	CTNAG	4 cut(s)	575, 712, 760, 915
DpnI	GATC	3 cut(s)	498, 890, 960
DpnII	GATC	3 cut(s)	496, 888, 958
EaeI	YGGCCR	2 cut(s)	81, 751
EagI	CGGCCG	1 cut(s)	751
Eam1104I	CTCTTC	3 cut(s)	612, 833, 948
EarI	CTCTTC	3 cut(s)	612, 833, 948
Ecl136II	GAGCTC	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	751
Eco130I	CCWWGG	2 cut(s)	927, 1023
Eco24I	GRGCYC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	620, 931
Eco52I	CGGCCG	1 cut(s)	751
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	992
EcoICRI	GAGCTC	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	931
EcoRII	CCWGG	1 cut(s)	774
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	927, 1023
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	2 cut(s)	927, 1023
FblI	GTMKAC	2 cut(s)	674, 894
Fnu4HI	GCNGC	2 cut(s)	92, 754
FokI	GGATG	2 cut(s)	61, 283
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	2 cut(s)	92, 754
FspBI	CTAG	2 cut(s)	872, 939
GluI	GCNGC	2 cut(s)	92, 754
GsaI	CCCAGC	2 cut(s)	841, 904
HaeIII	GGCC	4 cut(s)	83, 753, 786, 905
HapII	CCGG	3 cut(s)	192, 335, 645
Hin1I	GRCGYC	1 cut(s)	1005
HinfI	GANTC	5 cut(s)	144, 331, 833, 991, 1019
HpaII	CCGG	3 cut(s)	192, 335, 645
Hpy166II	GTNNAC	2 cut(s)	675, 895
Hpy188I	TCNGA	6 cut(s)	31, 312, 501, 952, 963, 988
Hpy188III	TCNNGA	3 cut(s)	391, 808, 1009
Hpy8I	GTNNAC	2 cut(s)	675, 895
Hpy99I	CGWCG	1 cut(s)	1010
HpyAV	CCTTC	2 cut(s)	442, 967
HpyCH4III	ACNGT	3 cut(s)	436, 525, 799
HpyCH4IV	ACGT	1 cut(s)	1005
HpyCH4V	TGCA	5 cut(s)	203, 541, 683, 726, 747
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 732, 753, 911
HpyF3I	CTNAG	4 cut(s)	575, 712, 760, 915
HpySE526I	ACGT	1 cut(s)	1005
Hsp92I	GRCGYC	1 cut(s)	1005
Kzo9I	GATC	3 cut(s)	496, 888, 958
LmnI	GCTCC	3 cut(s)	38, 592, 713
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	212, 756
MaeI	CTAG	2 cut(s)	872, 939
MaeII	ACGT	1 cut(s)	1005
MaeIII	GTNAC	3 cut(s)	157, 194, 436
MalI	GATC	3 cut(s)	498, 890, 960
MboI	GATC	3 cut(s)	496, 888, 958
MboII	GAAGA	3 cut(s)	599, 820, 965
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	1 cut(s)	958
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	489, 569
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	1000, 1028
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	8 cut(s)	228, 268, 293, 752, 904, 944, 949, 970
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	2 cut(s)	77, 269
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	3 cut(s)	764, 900, 970
MspI	CCGG	3 cut(s)	192, 335, 645
MspR9I	CCNGG	1 cut(s)	776
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	776
MwoI	GCNNNNNNNGC	4 cut(s)	69, 732, 753, 911
NdeII	GATC	3 cut(s)	496, 888, 958
NlaIV	GGNNCC	2 cut(s)	535, 588
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	1014
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	144, 331, 833
PflMI	CCANNNNNTGG	1 cut(s)	781
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	93, 755
PleI	GAGTC	2 cut(s)	999, 1027
PpsI	GAGTC	2 cut(s)	999, 1027
PpuMI	RGGWCCY	1 cut(s)	931
Psp124BI	GAGCTC	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	931
Psp6I	CCWGG	1 cut(s)	774
PspFI	CCCAGC	2 cut(s)	837, 900
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	2 cut(s)	535, 588
PspPI	GGNCC	4 cut(s)	620, 784, 903, 931
PspPPI	RGGWCCY	1 cut(s)	931
PsuI	RGATCY	1 cut(s)	958
PvuII	CAGCTG	2 cut(s)	764, 900
RsaI	GTAC	2 cut(s)	433, 740
RsaNI	GTAC	2 cut(s)	432, 739
RseI	CAYNNNNRTG	2 cut(s)	77, 269
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	92, 754
Sau3AI	GATC	3 cut(s)	496, 888, 958
Sau96I	GGNCC	4 cut(s)	620, 784, 903, 931
SchI	GAGTC	2 cut(s)	1000, 1028
ScrFI	CCNGG	1 cut(s)	776
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	2 cut(s)	212, 756
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	2 cut(s)	620, 931
SmiMI	CAYNNNNRTG	2 cut(s)	77, 269
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	2 cut(s)	489, 569
SsiI	CCGC	3 cut(s)	398, 754, 968
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	2 cut(s)	872, 939
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	774
StyI	CCWWGG	2 cut(s)	927, 1023
TaaI	ACNGT	3 cut(s)	436, 525, 799
TaiI	ACGT	1 cut(s)	1008
TaqI	TCGA	4 cut(s)	182, 317, 554, 831
TaqII	GACCGA	1 cut(s)	455
TasI	AATT	2 cut(s)	489, 569
TatI	WGTACW	1 cut(s)	431
TauI	GCSGC	1 cut(s)	756
TfiI	GAWTC	3 cut(s)	144, 331, 833
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	271, 723
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	5 cut(s)	65, 287, 353, 682, 806
TspRI	CASTG	2 cut(s)	271, 723
Van91I	CCANNNNNTGG	1 cut(s)	781
VpaK11BI	GGWCC	2 cut(s)	620, 931
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	674, 894
XspI	CTAG	2 cut(s)	872, 939
ZraI	GACGTC	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.