Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

35217522 .. 35218644

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG313000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAACTTCAGCCTCATGCTCAACTCTGTCAGCTTTTACCAGATTTCGAAGTTGAGCATGATTCCCGTGGTTTGTGTGATGGAATGGATTCTTAACAACAAGCAGTATTCCAAGGAGGTTAAAATGTCTGTTGTGGTTGTGGTTATTGATGTTGGTGTTTGTACCGTGACTGATGTAAAAGTTAACCTCAAAGGCTTCATATGCGCCTGCCTAGCAGTTTTGTCCACTTCTTTCCAGCAAATTTCTGTTGGGTCTCTTCAAAAGAAACAGTCACTTGGATCCTTTGAATTGCTGAGTAAGACTGCTCCAATTCAAGCCACTTCTCTACTCATTCTCGGCCCATTCATTGATTACATCCTTAGTGGTACATTCATAACAGACTATAAGATGTCTTCTGGTGCCATTGCATTCATTCTTCTTTCGTGCACCTTAGCTGTGTTTTGCAATATTAGCCAGTACCTCTGTATTGGACGTTTCTCTGCTGTTTCATTCCAGGTTTTAGGTCACATGAAAACAGTATGTGTCCTCACATTAGGGTGGCTTCTCTTTGATTCAGAGCTCACTTTCAAGAACATTATGGGGATGATTCTTGCAGTTGTTGGCATGGTGATTTATAGTTGGGCTGTCAAGGCAGAAAAACAGTCTGGCAAACCCGTGTCCCATTCAAAAACCAGCATGACAGAAGAGGAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

231

Amino Acids

25.34

Weight (kDa)

8.58

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	2 - 206	2.1e-17	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AclWI	GGATC	2 cut(s)	273, 286
AcsI	RAATTY	1 cut(s)	240
AfaI	GTAC	3 cut(s)	163, 367, 458
AgsI	TTSAA	5 cut(s)	260, 287, 314, 568, 666
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	3 cut(s)	33, 434, 559
AluI	AGCT	3 cut(s)	33, 434, 559
Alw21I	GWGCWC	2 cut(s)	428, 561
Alw26I	GTCTC	1 cut(s)	258
Alw44I	GTGCAC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	273, 286
AoxI	GGCC	1 cut(s)	337
ApaLI	GTGCAC	1 cut(s)	424
ApoI	RAATTY	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	619
AsuII	TTCGAA	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	428
BamHI	GGATCC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	561
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	2 cut(s)	428, 561
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	494
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	280, 400
BmrFI	CCNGG	1 cut(s)	494
BpiI	GAAGAC	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	430
Bpu14I	TTCGAA	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	66, 111
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	66, 111
BseGI	GGATG	2 cut(s)	354, 588
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	454
BseSI	GKGCMC	1 cut(s)	428
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	1 cut(s)	398
BsiHKAI	GWGCWC	2 cut(s)	428, 561
BslFI	GGGAC	1 cut(s)	643
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	643
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	339
Bso31I	GGTCTC	1 cut(s)	258
Bsp119I	TTCGAA	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	428, 561
Bsp143I	GATC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	280, 400
BspPI	GGATC	2 cut(s)	273, 286
BspT104I	TTCGAA	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	66, 111
BssMI	GATC	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	4 cut(s)	166, 270, 517, 642
Bst6I	CTCTTC	2 cut(s)	261, 678
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	3 cut(s)	293, 359, 430
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	354, 588
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	1 cut(s)	281
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 212, 450, 629
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	354, 588
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	3 cut(s)	162, 366, 457
CviAII	CATG	5 cut(s)	16, 58, 508, 604, 676
CviQI	GTAC	3 cut(s)	162, 366, 457
DdeI	CTNAG	3 cut(s)	293, 359, 430
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
Eam1104I	CTCTTC	2 cut(s)	261, 678
EarI	CTCTTC	2 cut(s)	261, 678
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	561
Eco31I	GGTCTC	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	5 cut(s)	19, 61, 511, 607, 679
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	5 cut(s)	15, 57, 507, 603, 675
FauNDI	CATATG	1 cut(s)	200
FokI	GGATG	2 cut(s)	341, 595
FriOI	GRGCYC	1 cut(s)	561
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	5 cut(s)	19, 61, 511, 607, 679
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	4 cut(s)	61, 88, 551, 586
HpaI	GTTAAC	1 cut(s)	184
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	3 cut(s)	184, 225, 426
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	1 cut(s)	568
Hpy8I	GTNNAC	3 cut(s)	184, 225, 426
HpyCH4III	ACNGT	4 cut(s)	166, 270, 517, 642
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	4 cut(s)	407, 426, 444, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 212, 450, 629
HpyF3I	CTNAG	3 cut(s)	293, 359, 430
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	5 cut(s)	19, 61, 511, 607, 679
HspAI	GCGC	1 cut(s)	204
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	9 cut(s)	53, 220, 248, 381, 467, 479, 506, 630, 685
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	3 cut(s)	166, 270, 503
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	4 cut(s)	248, 384, 407, 695
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	2 cut(s)	428, 561
MluCI	AATT	3 cut(s)	240, 287, 309
MnlI	CCTC	6 cut(s)	23, 109, 197, 470, 536, 679
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	3 cut(s)	93, 120, 183
MslI	CAYNNNNRTG	1 cut(s)	535
MspR9I	CCNGG	1 cut(s)	494
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	4 cut(s)	201, 212, 450, 629
NdeI	CATATG	1 cut(s)	200
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	5 cut(s)	19, 61, 511, 607, 679
NlaIV	GGNNCC	2 cut(s)	280, 400
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	3 cut(s)	166, 270, 503
NspV	TTCGAA	1 cut(s)	47
PctI	GAATGC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	4 cut(s)	61, 88, 551, 586
Psp124BI	GAGCTC	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	280, 400
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	3 cut(s)	163, 367, 458
RsaNI	GTAC	3 cut(s)	162, 366, 457
RseI	CAYNNNNRTG	1 cut(s)	535
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	3 cut(s)	93, 120, 183
Sau3AI	GATC	1 cut(s)	278
Sau96I	GGNCC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	2 cut(s)	428, 561
SfuI	TTCGAA	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	535
Sse9I	AATT	3 cut(s)	240, 287, 309
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	4 cut(s)	166, 270, 517, 642
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	1 cut(s)	47
TasI	AATT	3 cut(s)	240, 287, 309
TfiI	GAWTC	4 cut(s)	61, 88, 551, 586
Tru1I	TTAA	3 cut(s)	93, 120, 183
Tru9I	TTAA	3 cut(s)	93, 120, 183
TseFI	GTSAC	3 cut(s)	166, 270, 503
Tsp45I	GTSAC	3 cut(s)	166, 270, 503
TspDTI	ATGAA	7 cut(s)	17, 187, 334, 361, 400, 477, 524
VneI	GTGCAC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.