Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

4550787 .. 4551563

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG061300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCAACAATCAGCTTATGCCTCCCGCTCGCTTTGCTTTTGGTTTTGCTACAATTTTGACTGGCTTCCACTTCTCTGTTACTGCATTGGTTGGTTTCATATCGAATGCATCTGGGTACTCAGCATCGAAACATGTTCCTCTTTGGGAACTTAATTGGTTCTCACTTGTAGCTAACGGCTTTTATCAGATATCGAAGTTGAGCATGATTCCGGTGGTCTCTGATTTCTCAAGGGAAGTCAAGATTGCTGTGGCAGTGGTGATAATACGTGTGGGCATATGTACCGTCACCGATGTTAAAGTTAATGCCAAAGGTTTTCTCTGTGCTTGTGTGGCCATCTTGTGTACATCATTACAACAAATTTCAATAGGTTCATTACAGAAGTCAGAAGATGAGAAGAAATACTCAGTAGGCTCTTTTGAATTGCTCAGAAAGACAGCTCCAATTCAAGCTATCTCCCTTCTCATTCTTGGTCCATTTGTTGTTTACTTTCTTACTGGAAAACTTTTAACAGATTACAAGATGACGTCTGGTGCATTTGCATTCATAATGCTCTCTTGCTCCCTAGCAGTATTCTGCAACATCAGTCGGTACCTCTGCATCGGAAGATTCTCAGCCGTGTCATTCCAGGTTTTATTCATTTTAGGCCACATGAAGACTGTCTGTGTCTTGACATTGGGGTGGCTTCTCTTTGATTCAGCGCTCACATTTAAGAACTTGATGGGAATGGCTCTTGCAGTTGTCGGCATTATAGTTTACAGTTGGGTTGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

258

Amino Acids

28.09

Weight (kDa)

9.24

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	76 - 254	9.5e-13	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	530
Acc65I	GGTACC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	591
AccBSI	CCGCTC	1 cut(s)	29
AciI	CCGC	1 cut(s)	27
AcoI	YGGCCR	2 cut(s)	3, 333
AcsI	RAATTY	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	527
AfaI	GTAC	4 cut(s)	119, 283, 346, 593
AfeI	AGCGCT	1 cut(s)	702
AflIII	ACRYGT	2 cut(s)	133, 268
AgsI	TTSAA	3 cut(s)	366, 422, 449
AjnI	CCWGG	1 cut(s)	627
AluBI	AGCT	4 cut(s)	16, 173, 440, 452
AluI	AGCT	4 cut(s)	16, 173, 440, 452
Alw26I	GTCTC	1 cut(s)	223
Aor51HI	AGCGCT	1 cut(s)	702
AoxI	GGCC	3 cut(s)	3, 333, 646
ApoI	RAATTY	1 cut(s)	360
Asp718I	GGTACC	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	271, 280
AvaII	GGWCC	1 cut(s)	473
BalI	TGGCCA	2 cut(s)	5, 335
BanI	GGYRCC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	662
BccI	CCATC	2 cut(s)	344, 715
BceAI	ACGGC	2 cut(s)	193, 602
BciT130I	CCWGG	1 cut(s)	629
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	566
BfoI	RGCGCY	1 cut(s)	704
Bme1390I	CCNGG	1 cut(s)	629
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	1 cut(s)	593
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	3 cut(s)	119, 134, 609
BpiI	GAAGAC	1 cut(s)	662
BpuEI	CTTGAG	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	67, 502
BseBI	CCWGG	1 cut(s)	629
BseMII	CTCAG	4 cut(s)	135, 420, 442, 627
BseNI	ACTGG	2 cut(s)	67, 502
BshFI	GGCC	3 cut(s)	5, 335, 648
BshNI	GGYRCC	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	223
BsmI	GAATGC	2 cut(s)	112, 542
BsnI	GGCC	3 cut(s)	5, 335, 648
Bso31I	GGTCTC	1 cut(s)	223
Bsp1407I	TGTACA	1 cut(s)	344
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	3 cut(s)	5, 335, 648
BspCNI	CTCAG	4 cut(s)	134, 419, 441, 626
BspLI	GGNNCC	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	591
BspTNI	GGTCTC	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	67, 502
BssNI	GRCGYC	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	3 cut(s)	286, 661, 761
BstACI	GRCGYC	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	4 cut(s)	121, 406, 428, 613
BstH2I	RGCGCY	1 cut(s)	704
BstHHI	GCGC	1 cut(s)	703
BstMAI	GTCTC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 332
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	627
BstV2I	GAAGAC	1 cut(s)	662
BsuRI	GGCC	3 cut(s)	5, 335, 648
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	31
CfoI	GCGC	1 cut(s)	703
Cfr13I	GGNCC	1 cut(s)	473
Csp6I	GTAC	4 cut(s)	118, 282, 345, 592
CviAII	CATG	3 cut(s)	134, 205, 652
CviQI	GTAC	4 cut(s)	118, 282, 345, 592
DdeI	CTNAG	4 cut(s)	121, 406, 428, 613
EaeI	YGGCCR	2 cut(s)	3, 333
Eco31I	GGTCTC	1 cut(s)	223
Eco32I	GATATC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	473
Eco47III	AGCGCT	1 cut(s)	702
EcoRII	CCWGG	1 cut(s)	627
EcoRV	GATATC	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	112
FaeI	CATG	3 cut(s)	137, 208, 655
FaiI	YATR	9 cut(s)	20, 101, 135, 206, 278, 280, 548, 653, 752
FatI	CATG	3 cut(s)	133, 204, 651
FauI	CCCGC	1 cut(s)	34
FauNDI	CATATG	1 cut(s)	278
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	702
HaeII	RGCGCY	1 cut(s)	704
HaeIII	GGCC	3 cut(s)	5, 335, 648
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	703
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	3 cut(s)	137, 208, 655
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HinfI	GANTC	3 cut(s)	208, 609, 695
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	271, 280
Hpy166II	GTNNAC	3 cut(s)	345, 487, 757
Hpy188I	TCNGA	5 cut(s)	189, 223, 388, 431, 605
Hpy188III	TCNNGA	2 cut(s)	241, 670
Hpy8I	GTNNAC	3 cut(s)	345, 487, 757
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	3 cut(s)	286, 661, 761
HpyCH4IV	ACGT	2 cut(s)	268, 527
HpyCH4V	TGCA	7 cut(s)	86, 110, 536, 542, 579, 600, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 332
HpyF3I	CTNAG	4 cut(s)	121, 406, 428, 613
HpySE526I	ACGT	2 cut(s)	268, 527
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	137, 208, 655
HspAI	GCGC	1 cut(s)	701
KpnI	GGTACC	1 cut(s)	595
LmnI	GCTCC	2 cut(s)	445, 566
LpnPI	CCDG	7 cut(s)	48, 99, 225, 483, 516, 614, 641
LweI	GCATC	3 cut(s)	119, 134, 609
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	2 cut(s)	268, 527
MaeIII	GTNAC	2 cut(s)	79, 286
MbiI	CCGCTC	1 cut(s)	29
MboII	GAAGA	4 cut(s)	401, 409, 618, 667
MlsI	TGGCCA	2 cut(s)	5, 335
MluCI	AATT	5 cut(s)	54, 154, 360, 422, 444
MluNI	TGGCCA	2 cut(s)	5, 335
MmeI	TCCRAC	1 cut(s)	748
MnlI	CCTC	4 cut(s)	33, 150, 605, 764
Mox20I	TGGCCA	2 cut(s)	5, 335
Mph1103I	ATGCAT	1 cut(s)	112
MscI	TGGCCA	2 cut(s)	5, 335
MseI	TTAA	5 cut(s)	153, 297, 303, 509, 711
MslI	CAYNNNNRTG	1 cut(s)	679
Msp20I	TGGCCA	2 cut(s)	5, 335
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	629
Mva1269I	GAATGC	2 cut(s)	112, 542
MvaI	CCWGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	2 cut(s)	35, 332
NdeI	CATATG	1 cut(s)	278
NlaIII	CATG	3 cut(s)	137, 208, 655
NlaIV	GGNNCC	1 cut(s)	593
NmuCI	GTSAC	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	137
PciI	ACATGT	1 cut(s)	133
PctI	GAATGC	2 cut(s)	112, 542
PfeI	GAWTC	3 cut(s)	208, 609, 695
Ppu21I	YACGTR	1 cut(s)	269
PscI	ACATGT	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	1 cut(s)	593
PspPI	GGNCC	1 cut(s)	473
RsaI	GTAC	4 cut(s)	119, 283, 346, 593
RsaNI	GTAC	4 cut(s)	118, 282, 345, 592
RseI	CAYNNNNRTG	1 cut(s)	679
SaqAI	TTAA	5 cut(s)	153, 297, 303, 509, 711
Sau96I	GGNCC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	629
SfaNI	GCATC	3 cut(s)	119, 134, 609
SinI	GGWCC	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	5 cut(s)	54, 154, 360, 422, 444
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	1 cut(s)	627
TaaI	ACNGT	3 cut(s)	286, 661, 761
TaiI	ACGT	2 cut(s)	271, 530
TaqI	TCGA	3 cut(s)	104, 128, 194
TasI	AATT	5 cut(s)	54, 154, 360, 422, 444
TatI	WGTACW	1 cut(s)	344
TfiI	GAWTC	3 cut(s)	208, 609, 695
Tru1I	TTAA	5 cut(s)	153, 297, 303, 509, 711
Tru9I	TTAA	5 cut(s)	153, 297, 303, 509, 711
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	5 cut(s)	88, 363, 535, 628, 668
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	1 cut(s)	566
ZraI	GACGTC	1 cut(s)	528
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.