Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004530.1

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Forward (+)

4842 .. 6358

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004530.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgacatatgcgtcggagcaccttgcaactagatcattcttgagaggccttgaagaccgagatgctacgagaaccaccactttaactgggttccatttttctgtaattgcactcgttggcctcgtctccaatgctagcggttattctgcctccaagcatgttcccttttgggagcttctttggttctccatcgttgccaatgtctccatcaccgccatgaacttcagcctcatgatcaactctgtcggcttttaccagatttcgaagttgagcatgattcccgtggtttgtgtgatggaatggattcttaacaacaagcagtattccaaggaggttaaaatgtctgttgtggttgtggttatagatgttgagctcactttcaagaacattatggggatgattcttgcagtcgttggcatggtgatttatagttgggctgtcgaggcagaaaaacagtctggcaaacccgtgtcccattcaaaaaccagcatgacagaagaggaaattgaacttttgaaggcaggactggataccactactgtgaaggatgttgaacttggagcagctaaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

191

Amino Acids

21.14

Weight (kDa)

6.08

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AciI	CCGC	2 cut(s)	138, 213
AcsI	RAATTY	1 cut(s)	569
AcuI	CTGAAG	1 cut(s)	208
AgsI	TTSAA	6 cut(s)	53, 382, 480, 509, 517, 554
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	3 cut(s)	175, 373, 566
AluI	AGCT	3 cut(s)	175, 373, 566
Alw21I	GWGCWC	2 cut(s)	21, 375
Alw26I	GTCTC	2 cut(s)	130, 208
AoxI	GGCC	2 cut(s)	46, 118
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	202, 433
AsuII	TTCGAA	1 cut(s)	263
AsuNHI	GCTAGC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	21, 375
BccI	CCATC	3 cut(s)	197, 215, 289
BciVI	GTATCC	1 cut(s)	523
BclI	TGATCA	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	130, 208
BfaI	CTAG	2 cut(s)	30, 135
BfuI	GTATCC	1 cut(s)	523
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
BmiI	GGNNCC	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	52
BmtI	GCTAGC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	60
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	282, 327
Bse1I	ACTGG	2 cut(s)	91, 531
BseDI	CCNNGG	2 cut(s)	282, 327
BseGI	GGATG	2 cut(s)	402, 553
BseNI	ACTGG	2 cut(s)	91, 531
BshFI	GGCC	2 cut(s)	48, 120
BsiHKAI	GWGCWC	2 cut(s)	21, 375
BslFI	GGGAC	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	130, 208
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	48, 120
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	21, 375
Bsp143I	GATC	2 cut(s)	32, 234
BspACI	CCGC	2 cut(s)	138, 213
BspANI	GGCC	2 cut(s)	48, 120
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	92
BspOI	GCTAGC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	91, 531
BssECI	CCNNGG	2 cut(s)	282, 327
BssMI	GATC	2 cut(s)	32, 234
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	456, 541
Bst6I	CTCTTC	1 cut(s)	492
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	136
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	402, 553
BstKTI	GATC	2 cut(s)	35, 237
BstMAI	GTCTC	2 cut(s)	130, 208
BstMBI	GATC	2 cut(s)	32, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNSI	RCATGY	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	523
BsuRI	GGCC	2 cut(s)	48, 120
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	402, 553
Cac8I	GCNNGC	1 cut(s)	136
CciI	TCATGA	1 cut(s)	231
CviAII	CATG	6 cut(s)	158, 217, 232, 274, 418, 490
CviJI	RGCY	8 cut(s)	48, 120, 175, 228, 249, 373, 437, 566
CviKI_1	RGCY	8 cut(s)	48, 120, 175, 228, 249, 373, 437, 566
DpnI	GATC	2 cut(s)	34, 236
DpnII	GATC	2 cut(s)	32, 234
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	6 cut(s)	161, 220, 235, 277, 421, 493
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	6 cut(s)	157, 216, 231, 273, 417, 489
FauNDI	CATATG	1 cut(s)	7
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	2 cut(s)	409, 560
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	2 cut(s)	30, 135
GluI	GCNGC	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	48, 120
Hin1II	CATG	6 cut(s)	161, 220, 235, 277, 421, 493
HinfI	GANTC	3 cut(s)	277, 304, 400
HphI	GGTGA	2 cut(s)	202, 433
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	3 cut(s)	40, 232, 382
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	511, 538
HpyCH4III	ACNGT	2 cut(s)	456, 541
HpyCH4V	TGCA	3 cut(s)	26, 110, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
Hsp92II	CATG	6 cut(s)	161, 220, 235, 277, 421, 493
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	32, 234
LmnI	GCTCC	3 cut(s)	16, 172, 560
LpnPI	CCDG	6 cut(s)	72, 269, 444, 499, 507, 512
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	30, 135
MalI	GATC	2 cut(s)	34, 236
MboI	GATC	2 cut(s)	32, 234
MboII	GAAGA	2 cut(s)	65, 509
MhlI	GDGCHC	2 cut(s)	21, 375
MluCI	AATT	3 cut(s)	105, 504, 569
MnlI	CCTC	7 cut(s)	38, 131, 160, 239, 325, 436, 493
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	3 cut(s)	83, 309, 336
MslI	CAYNNNNRTG	2 cut(s)	215, 539
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	2 cut(s)	32, 234
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	6 cut(s)	161, 220, 235, 277, 421, 493
NlaIV	GGNNCC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	161
NspV	TTCGAA	1 cut(s)	263
OliI	CACNNNNGTG	1 cut(s)	539
PagI	TCATGA	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	3 cut(s)	277, 304, 400
PkrI	GCNGC	1 cut(s)	565
Psp124BI	GAGCTC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	92
RseI	CAYNNNNRTG	2 cut(s)	215, 539
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	83, 309, 336
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	2 cut(s)	32, 234
SduI	GDGCHC	2 cut(s)	21, 375
SetI	ASST	5 cut(s)	24, 177, 336, 375, 568
SfaNI	GCATC	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	215, 539
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	3 cut(s)	105, 504, 569
SseBI	AGGCCT	1 cut(s)	48
SsiI	CCGC	2 cut(s)	138, 213
SspMI	CTAG	2 cut(s)	30, 135
SstI	GAGCTC	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	456, 541
TaqI	TCGA	2 cut(s)	263, 441
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	105, 504, 569
TfiI	GAWTC	3 cut(s)	277, 304, 400
Tru1I	TTAA	3 cut(s)	83, 309, 336
Tru9I	TTAA	3 cut(s)	83, 309, 336
TseI	GCWGC	1 cut(s)	563
TspDTI	ATGAA	1 cut(s)	233
XapI	RAATTY	1 cut(s)	569
XceI	RCATGY	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	2 cut(s)	30, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.