Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

35269288 .. 35270684

Gene Structure 1397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG313500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGACATATGCGTCGGAGCACCTTGCAACTAGATCATTCTTGAGAGGCCTTGAAGACCGAGATGCTACGAGAACCACCACTTTAACTGGGTTCCATTTTTCTGTAACTGCACTCATTCGCCTCGTCTCCAATGCTAGCGGTTATTCTGCCTTCAAGCATGTTCCCTTTTGGGAGCTTCTTTGGTTCTCCATCGTTGCCAATGTCTCCATCACCGCCATGAACTTCAGCCTCATGCTCAACTCTGTCGGCTTTTACCAGATTTCGAAGTTGAGCATGATTCCCGTGGTTTGTGTGATGGAATGGATTCTTAACAACAAGCAGTATTCCAAGGAGGTTAAAATGTCTGTTGTGGTTGTGGTTATAGGTGTTGGTGTTTGTACCGTGACTGATGTGAAAGTTAACCTCAAAGGCTTCATATGCGCCTGCCTAGCAGTTTTGTCCACTTCTTTCCAGCAAATTTCTATTGGGTCTCTTCAAAAGACACATGCAGTTGGATCCTTTGAATTGCTGAGTAAGACTGCTCCAATTCAAGCCACTTCTCTACTCACTCTCGGCCCATTCATTGATTACATCCTTAGTGGTACATTCATAACAGACTATAAGATGTCTTCTGGTGCCATTAGTTCACTTTCAAGAACATTATGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

216

Amino Acids

23.66

Weight (kDa)

9.1

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	27 - 188	1.5e-10	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	2 cut(s)	138, 213
AclWI	GGATC	2 cut(s)	489, 502
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	208
AfaI	GTAC	2 cut(s)	379, 583
AgsI	TTSAA	6 cut(s)	53, 154, 476, 503, 530, 633
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	3 cut(s)	130, 208, 474
AlwI	GGATC	2 cut(s)	489, 502
AoxI	GGCC	2 cut(s)	46, 553
ApoI	RAATTY	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	554
AsuHPI	GGTGA	1 cut(s)	202
AsuII	TTCGAA	1 cut(s)	263
AsuNHI	GCTAGC	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	614
BbsI	GAAGAC	2 cut(s)	60, 600
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	3 cut(s)	197, 215, 289
BcoDI	GTCTC	3 cut(s)	130, 208, 474
BfaI	CTAG	3 cut(s)	30, 135, 428
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	3 cut(s)	92, 496, 616
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	52
BmtI	GCTAGC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	2 cut(s)	60, 600
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	282, 327
Bse1I	ACTGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	282, 327
BseGI	GGATG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	48, 555
BshNI	GGYRCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	21
BsmAI	GTCTC	3 cut(s)	130, 208, 474
BsmBI	CGTCTC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	48, 555
Bso31I	GGTCTC	1 cut(s)	474
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	32, 494
BspACI	CCGC	2 cut(s)	138, 213
BspANI	GGCC	2 cut(s)	48, 555
BspCNI	CTCAG	1 cut(s)	501
BspLI	GGNNCC	3 cut(s)	92, 496, 616
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	489, 502
BspT104I	TTCGAA	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	282, 327
BssMI	GATC	2 cut(s)	32, 494
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	477
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	136, 424
BstDEI	CTNAG	2 cut(s)	509, 575
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	2 cut(s)	35, 497
BstMAI	GTCTC	3 cut(s)	130, 208, 474
BstMBI	GATC	2 cut(s)	32, 494
BstMWI	GCNNNNNNNGC	2 cut(s)	417, 428
BstNSI	RCATGY	2 cut(s)	161, 488
BstV2I	GAAGAC	2 cut(s)	60, 600
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	48, 555
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	570
Cac8I	GCNNGC	2 cut(s)	136, 424
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	554
Csp6I	GTAC	2 cut(s)	378, 582
CviAII	CATG	5 cut(s)	158, 217, 232, 274, 485
CviJI	RGCY	7 cut(s)	48, 175, 228, 249, 411, 533, 555
CviKI_1	RGCY	7 cut(s)	48, 175, 228, 249, 411, 533, 555
CviQI	GTAC	2 cut(s)	378, 582
DdeI	CTNAG	2 cut(s)	509, 575
DpnI	GATC	2 cut(s)	34, 496
DpnII	GATC	2 cut(s)	32, 494
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	5 cut(s)	161, 220, 235, 277, 488
FatI	CATG	5 cut(s)	157, 216, 231, 273, 484
FauNDI	CATATG	2 cut(s)	7, 416
FokI	GGATG	1 cut(s)	557
FspBI	CTAG	3 cut(s)	30, 135, 428
GlaI	GCGC	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	48, 555
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	5 cut(s)	161, 220, 235, 277, 488
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	277, 304
HpaI	GTTAAC	1 cut(s)	400
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	3 cut(s)	400, 441, 626
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	40, 633
Hpy8I	GTNNAC	3 cut(s)	400, 441, 626
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	3 cut(s)	26, 110, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	417, 428
HpyF3I	CTNAG	2 cut(s)	509, 575
Hsp92II	CATG	5 cut(s)	161, 220, 235, 277, 488
HspAI	GCGC	1 cut(s)	420
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	32, 494
LmnI	GCTCC	3 cut(s)	16, 172, 526
LpnPI	CCDG	5 cut(s)	72, 269, 436, 464, 597
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	3 cut(s)	30, 135, 428
MaeIII	GTNAC	2 cut(s)	103, 382
MalI	GATC	2 cut(s)	34, 496
MboI	GATC	2 cut(s)	32, 494
MboII	GAAGA	3 cut(s)	65, 464, 600
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	456, 503, 525
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	5 cut(s)	38, 131, 239, 325, 413
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	4 cut(s)	83, 309, 336, 399
MslI	CAYNNNNRTG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	417, 428
NdeI	CATATG	2 cut(s)	7, 416
NdeII	GATC	2 cut(s)	32, 494
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	5 cut(s)	161, 220, 235, 277, 488
NlaIV	GGNNCC	3 cut(s)	92, 496, 616
NmeAIII	GCCGAG	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	2 cut(s)	161, 488
NspV	TTCGAA	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	277, 304
PspN4I	GGNNCC	3 cut(s)	92, 496, 616
PspPI	GGNCC	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	2 cut(s)	379, 583
RsaNI	GTAC	2 cut(s)	378, 582
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	4 cut(s)	83, 309, 336, 399
Sau3AI	GATC	2 cut(s)	32, 494
Sau96I	GGNCC	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	5 cut(s)	24, 177, 336, 367, 405
SfaNI	GCATC	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	3 cut(s)	456, 503, 525
SseBI	AGGCCT	1 cut(s)	48
SsiI	CCGC	2 cut(s)	138, 213
SspMI	CTAG	3 cut(s)	30, 135, 428
StuI	AGGCCT	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	263
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	456, 503, 525
TfiI	GAWTC	2 cut(s)	277, 304
Tru1I	TTAA	4 cut(s)	83, 309, 336, 399
Tru9I	TTAA	4 cut(s)	83, 309, 336, 399
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	4 cut(s)	233, 403, 550, 577
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	2 cut(s)	161, 488
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	3 cut(s)	30, 135, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.