Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

4289284 .. 4290074

Gene Structure 791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGATCCGCCCCTGTTTGCTACAACTTTGACTGAGAGCCACTTCTCTGTTACTGCAGTGGTTGGTTTCATATCGAATGCATCTGGGTACTCAGCATCGAAACATGTTCCTCTTTGGGAACTTATTTGGTTCTCACTTGTAGCCAATGCCTCAATTACAGGGATGAACTTGAGTCTCATGCTTAACTCTGTCGGCTTTTATCAGATATCGAAGTCCGGTGGTCTCTGTGATGGATTGGATTATCCACGATTACAAGATGACGTCTGGTGCATTTGCATTCATAATGCTCTCTTGCTCCCTAGCAGTATTCTGCAACATCAGTCGGTACCTCTGCATGGAAGATTCTCAGCCGTGTCATTCCAGGTTTTATTCATTTTAGGCCACATGAAGACTATCTGTGTCTTGACATTGGGGTGGCTTCTCTTTGATTCAGCGCTCACATTTAAGAACTTGATGGGAATGGCTCTTGCAGTTGGCGGCATTATAGTTTACAGTTGGGTTGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

169

Amino Acids

18.34

Weight (kDa)

6.25

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
Acc65I	GGTACC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	325
AciI	CCGC	2 cut(s)	8, 477
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	2 cut(s)	89, 327
AfeI	AGCGCT	1 cut(s)	435
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	179, 227
AlwI	GGATC	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	435
AoxI	GGCC	1 cut(s)	379
Asp718I	GGTACC	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	436
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	395
BccI	CCATC	2 cut(s)	224, 448
BceAI	ACGGC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	179, 227
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	1 cut(s)	478
BlsI	GCNGC	1 cut(s)	479
Bme1390I	CCNGG	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	6, 327
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	2 cut(s)	89, 104
BpiI	GAAGAC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	227
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	3 cut(s)	24, 105, 360
BshFI	GGCC	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	179, 227
BsmI	GAATGC	2 cut(s)	82, 276
BsnI	GGCC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	2 cut(s)	8, 477
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	3 cut(s)	25, 104, 359
BspLI	GGNNCC	2 cut(s)	6, 327
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	227
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	494
BstACI	GRCGYC	1 cut(s)	261
BstDEI	CTNAG	3 cut(s)	33, 91, 346
BstF5I	GGATG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	179, 227
BstMBI	GATC	1 cut(s)	4
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
CfoI	GCGC	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	88, 326
CviAII	CATG	4 cut(s)	104, 178, 335, 385
CviJI	RGCY	8 cut(s)	39, 143, 195, 350, 381, 418, 464, 507
CviKI_1	RGCY	8 cut(s)	39, 143, 195, 350, 381, 418, 464, 507
CviQI	GTAC	2 cut(s)	88, 326
DdeI	CTNAG	3 cut(s)	33, 91, 346
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco31I	GGTCTC	1 cut(s)	227
Eco32I	GATATC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	360
EcoRV	GATATC	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	82
FaeI	CATG	4 cut(s)	107, 181, 338, 388
FaiI	YATR	7 cut(s)	71, 105, 179, 282, 336, 386, 485
FatI	CATG	4 cut(s)	103, 177, 334, 384
Fnu4HI	GCNGC	1 cut(s)	478
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	478
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	478
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	436
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	4 cut(s)	107, 181, 338, 388
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HinfI	GANTC	3 cut(s)	172, 342, 428
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	1 cut(s)	490
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	7 cut(s)	56, 80, 270, 276, 313, 334, 470
HpyF3I	CTNAG	3 cut(s)	33, 91, 346
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	107, 181, 338, 388
HspAI	GCGC	1 cut(s)	434
KpnI	GGTACC	1 cut(s)	329
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	7 cut(s)	26, 69, 144, 229, 250, 347, 374
LweI	GCATC	2 cut(s)	89, 104
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	351, 400
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	4 cut(s)	120, 160, 339, 497
Mph1103I	ATGCAT	1 cut(s)	82
MseI	TTAA	2 cut(s)	183, 444
MslI	CAYNNNNRTG	1 cut(s)	412
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	362
Mva1269I	GAATGC	2 cut(s)	82, 276
MvaI	CCWGG	1 cut(s)	362
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	107, 181, 338, 388
NlaIV	GGNNCC	2 cut(s)	6, 327
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	107
PciI	ACATGT	1 cut(s)	103
PctI	GAATGC	2 cut(s)	82, 276
PfeI	GAWTC	2 cut(s)	342, 428
PkrI	GCNGC	1 cut(s)	479
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PscI	ACATGT	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	6, 327
PstI	CTGCAG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	89, 327
RsaNI	GTAC	2 cut(s)	88, 326
RseI	CAYNNNNRTG	1 cut(s)	412
SaqAI	TTAA	2 cut(s)	183, 444
SatI	GCNGC	1 cut(s)	478
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	362
SetI	ASST	3 cut(s)	264, 331, 366
SfaNI	GCATC	2 cut(s)	89, 104
SfcI	CTRYAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	2 cut(s)	8, 477
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	494
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	74, 98, 209
TasI	AATT	1 cut(s)	153
TauI	GCSGC	1 cut(s)	480
TfiI	GAWTC	2 cut(s)	342, 428
Tru1I	TTAA	2 cut(s)	183, 444
Tru9I	TTAA	2 cut(s)	183, 444
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	5 cut(s)	58, 179, 269, 361, 401
TspRI	CASTG	1 cut(s)	63
XceI	RCATGY	1 cut(s)	107
XspI	CTAG	1 cut(s)	300
ZraI	GACGTC	1 cut(s)	262
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.