Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

35795381 .. 35799575

Gene Structure 4195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19498

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAACTTCAGCCTCATGCTTAACTCTGTCGGCTTTTACCAGATTTCGAAGTTGAGCATGATTCCCGTGGTTTGTGTGATGGAATGGATTCTTAACAACAAGCAGTATTCCAAGGAGGTTAAAATGTCTGTTGTGGTTGTGGTTATAGGTGTTGGTGTTTGTACCGTGACTGATGTGAAAGTTAACCTCAAAGGCTTCATGTGCGCCTGCCTAGCAGTTTTGTCCACTTCTTTCCAGCAAATTTCTATTGGGTCTCTTAAAAAGAAACATTCAGTTGGATCCTTTGAATTGCTGAGTAAGACTGCTCCAATTCAAGCCACTTCTCTACTCATTCTCGGCCCATTCATTGATTACATCCTTAGTGGTACATTCATAACAGACTATAAGATGTCTTCTGGTGCCATTGTAAGCACTTTATCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

141

Amino Acids

15.32

Weight (kDa)

9.12

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	2 - 117	1.1e-09	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AclWI	GGATC	2 cut(s)	273, 286
AcsI	RAATTY	1 cut(s)	240
AfaI	GTAC	2 cut(s)	163, 367
AgsI	TTSAA	2 cut(s)	287, 314
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	2 cut(s)	273, 286
AoxI	GGCC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	338
AsuII	TTCGAA	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	384
BccI	CCATC	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	280, 400
BpiI	GAAGAC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	66, 111
BseDI	CCNNGG	2 cut(s)	66, 111
BseGI	GGATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	339
Bso31I	GGTCTC	1 cut(s)	258
Bsp119I	TTCGAA	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	280, 400
BspPI	GGATC	2 cut(s)	273, 286
BspT104I	TTCGAA	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	66, 111
BssMI	GATC	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	166
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	2 cut(s)	293, 359
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	1 cut(s)	281
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 212
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	162, 366
CviAII	CATG	3 cut(s)	16, 58, 199
CviJI	RGCY	5 cut(s)	12, 33, 195, 317, 339
CviKI_1	RGCY	5 cut(s)	12, 33, 195, 317, 339
CviQI	GTAC	2 cut(s)	162, 366
DdeI	CTNAG	2 cut(s)	293, 359
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	3 cut(s)	19, 61, 202
FaiI	YATR	6 cut(s)	17, 59, 146, 200, 374, 384
FatI	CATG	3 cut(s)	15, 57, 198
FokI	GGATG	1 cut(s)	341
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	3 cut(s)	19, 61, 202
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	61, 88
HpaI	GTTAAC	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	184, 225
Hpy8I	GTNNAC	2 cut(s)	184, 225
HpyCH4III	ACNGT	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 212
HpyF3I	CTNAG	2 cut(s)	293, 359
Hsp92II	CATG	3 cut(s)	19, 61, 202
HspAI	GCGC	1 cut(s)	204
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	4 cut(s)	53, 220, 248, 381
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	1 cut(s)	384
MflI	RGATCY	1 cut(s)	278
MluCI	AATT	3 cut(s)	240, 287, 309
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	23, 109, 197
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	5 cut(s)	21, 93, 120, 183, 258
MwoI	GCNNNNNNNGC	2 cut(s)	201, 212
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	3 cut(s)	19, 61, 202
NlaIV	GGNNCC	2 cut(s)	280, 400
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	61, 88
PspN4I	GGNNCC	2 cut(s)	280, 400
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	2 cut(s)	163, 367
RsaNI	GTAC	2 cut(s)	162, 366
SaqAI	TTAA	5 cut(s)	21, 93, 120, 183, 258
Sau3AI	GATC	1 cut(s)	278
Sau96I	GGNCC	1 cut(s)	338
SetI	ASST	3 cut(s)	120, 151, 189
SfuI	TTCGAA	1 cut(s)	47
Sse9I	AATT	3 cut(s)	240, 287, 309
SspMI	CTAG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	47
TasI	AATT	3 cut(s)	240, 287, 309
TfiI	GAWTC	2 cut(s)	61, 88
Tru1I	TTAA	5 cut(s)	21, 93, 120, 183, 258
Tru9I	TTAA	5 cut(s)	21, 93, 120, 183, 258
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	4 cut(s)	17, 187, 334, 361
XapI	RAATTY	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.