Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

33742433 .. 33746366

Gene Structure 3934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCAGCTTTAACCAGAGGCTGCTTCAATCGAAATGCCACCACTTTAACTGGGTTCCATTTTTCTGTAACTGCACTCGTTGGCCTCGTCTCCAATGCTAGCAATTATTCTGCCTTCAAGCATGTTCCCTTTTGGGAGCTTCTTTGGTTCTCCATCGTTGCCAATGTCTCCATCACCGCCATGAACTTCAGCCTCATGCTCAACTCTGTCAGCTTTTACCAGATTTCGAAGTTGAGCATGATTCCCGTGGTTTGTGTGATGGAATGGATTCTCAACAACAAGCAGTATTCCAAGGAGGTTAAAATGTCTGTTGTGGTTGTGGTTATAGGTCTTGGTGTTTGTACCGTGACTGATGTAAAAGTTAACCTCAAAGGCTTCATATGCGCCTGCCTAGCAGTTTTGTCCACTTCTTTCCAGCAAATTTCTATTGGGTCTCTTCAAAAGAAACATTCAGTTGGATCCTTTGAATTGCCGAGTAAGACTGCTCCAATTCAAGCCACTTCTCTACTCATTCTCGGCCCATTCATTGATTACATCCTTCGTGGTACATTCATAACAGACTATAAGATGTCTTCTGGTGCCATTGCATTCATTCTTCTTTCGTGCACCTTAGCTGTGTTTTGCAATATTAGCGAGTACCTTTGTATTGGACGTTTCTCTGCTGTTTCATTCCAGGTTTTAGGTCACATGAAAACAGTATGTGTCCTCACATTAGGGTGGCTTCTCTTTGATTCAGAGCTCACTTTCAAGAACATTATGTGGATGATTCGTGCAGTCGTTGGCATGGTGATTTATAGTTGGGCTGTTGTGGCAGAAAAACAGTCTAGCAAACCCGTGTCCCATTCAAAAACCAGCATGACAGGAGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

290

Amino Acids

31.79

Weight (kDa)

9.23

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	19 - 266	4.1e-17	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	578
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	2 cut(s)	453, 466
AcsI	RAATTY	1 cut(s)	420
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	3 cut(s)	343, 547, 638
AgsI	TTSAA	7 cut(s)	28, 118, 440, 467, 494, 748, 846
AjnI	CCWGG	1 cut(s)	672
AluBI	AGCT	5 cut(s)	8, 139, 213, 614, 739
AluI	AGCT	5 cut(s)	8, 139, 213, 614, 739
Alw21I	GWGCWC	2 cut(s)	608, 741
Alw26I	GTCTC	3 cut(s)	94, 172, 438
Alw44I	GTGCAC	1 cut(s)	604
AlwI	GGATC	2 cut(s)	453, 466
AlwNI	CAGNNNCTG	1 cut(s)	21
AoxI	GGCC	2 cut(s)	82, 517
ApaLI	GTGCAC	1 cut(s)	604
ApeKI	GCWGC	2 cut(s)	5, 21
ApoI	RAATTY	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	166, 799
AsuII	TTCGAA	1 cut(s)	227
AsuNHI	GCTAGC	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	608
BamHI	GGATCC	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	578
BanII	GRGCYC	1 cut(s)	741
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	2 cut(s)	608, 741
BbvI	GCAGC	2 cut(s)	8, 17
BccI	CCATC	3 cut(s)	161, 179, 253
BciT130I	CCWGG	1 cut(s)	674
BcoDI	GTCTC	3 cut(s)	94, 172, 438
BfaI	CTAG	3 cut(s)	99, 392, 825
BisI	GCNGC	2 cut(s)	6, 22
BlsI	GCNGC	2 cut(s)	7, 23
Bme1390I	CCNGG	1 cut(s)	674
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	3 cut(s)	56, 460, 580
BmrFI	CCNGG	1 cut(s)	674
BmrI	ACTGGG	1 cut(s)	60
BmtI	GCTAGC	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	610
Bpu14I	TTCGAA	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	246, 291
Bse1I	ACTGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	2 cut(s)	246, 291
BseGI	GGATG	2 cut(s)	534, 768
BseMI	GCAATG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	8, 17
BsgI	GTGCAG	2 cut(s)	57, 792
BshFI	GGCC	2 cut(s)	84, 519
BshNI	GGYRCC	1 cut(s)	578
BsiHKAI	GWGCWC	2 cut(s)	608, 741
BslFI	GGGAC	1 cut(s)	823
BsmAI	GTCTC	3 cut(s)	94, 172, 438
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	823
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	84, 519
Bso31I	GGTCTC	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	608, 741
Bsp143I	GATC	1 cut(s)	458
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	2 cut(s)	84, 519
BspLI	GGNNCC	3 cut(s)	56, 460, 580
BspOI	GCTAGC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	453, 466
BspT104I	TTCGAA	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	578
BspTNI	GGTCTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	246, 291
BssMI	GATC	1 cut(s)	458
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	3 cut(s)	346, 697, 822
Bst6I	CTCTTC	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	100, 388
BstDEI	CTNAG	1 cut(s)	610
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	534, 768
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	1 cut(s)	461
BstMAI	GTCTC	3 cut(s)	94, 172, 438
BstMBI	GATC	1 cut(s)	458
BstMWI	GCNNNNNNNGC	4 cut(s)	381, 392, 630, 809
BstNI	CCWGG	1 cut(s)	674
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	672
BstSLI	GKGCMC	1 cut(s)	608
BstV1I	GCAGC	2 cut(s)	8, 17
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	84, 519
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	534, 768
Cac8I	GCNNGC	2 cut(s)	100, 388
CaiI	CAGNNNCTG	1 cut(s)	21
CfoI	GCGC	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	518
Csp6I	GTAC	3 cut(s)	342, 546, 637
CviAII	CATG	7 cut(s)	122, 181, 196, 238, 688, 784, 856
CviQI	GTAC	3 cut(s)	342, 546, 637
DdeI	CTNAG	1 cut(s)	610
DpnI	GATC	1 cut(s)	460
DpnII	GATC	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Ecl136II	GAGCTC	1 cut(s)	739
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	739
Eco57I	CTGAAG	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	672
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	7 cut(s)	125, 184, 199, 241, 691, 787, 859
FaqI	GGGAC	1 cut(s)	823
FatI	CATG	7 cut(s)	121, 180, 195, 237, 687, 783, 855
FauNDI	CATATG	1 cut(s)	380
Fnu4HI	GCNGC	2 cut(s)	6, 22
FokI	GGATG	2 cut(s)	521, 775
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	2 cut(s)	6, 22
FspBI	CTAG	3 cut(s)	99, 392, 825
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	2 cut(s)	6, 22
HaeIII	GGCC	2 cut(s)	84, 519
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	7 cut(s)	125, 184, 199, 241, 691, 787, 859
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	4 cut(s)	241, 268, 731, 766
HpaI	GTTAAC	1 cut(s)	364
HphI	GGTGA	2 cut(s)	166, 799
Hpy166II	GTNNAC	3 cut(s)	364, 405, 606
Hpy188I	TCNGA	1 cut(s)	736
Hpy188III	TCNNGA	1 cut(s)	748
Hpy8I	GTNNAC	3 cut(s)	364, 405, 606
HpyAV	CCTTC	2 cut(s)	124, 548
HpyCH4III	ACNGT	3 cut(s)	346, 697, 822
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	5 cut(s)	74, 587, 606, 624, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	381, 392, 630, 809
HpyF3I	CTNAG	1 cut(s)	610
HpySE526I	ACGT	1 cut(s)	652
Hsp92II	CATG	7 cut(s)	125, 184, 199, 241, 691, 787, 859
HspAI	GCGC	1 cut(s)	384
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	458
LmnI	GCTCC	2 cut(s)	136, 490
Lsp1109I	GCAGC	2 cut(s)	8, 17
MaeI	CTAG	3 cut(s)	99, 392, 825
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	3 cut(s)	67, 346, 683
MalI	GATC	1 cut(s)	460
MboI	GATC	1 cut(s)	458
MboII	GAAGA	3 cut(s)	428, 564, 587
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	2 cut(s)	608, 741
MluCI	AATT	5 cut(s)	103, 420, 467, 489, 868
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	7 cut(s)	11, 95, 203, 289, 377, 716, 857
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	4 cut(s)	11, 47, 300, 363
MslI	CAYNNNNRTG	2 cut(s)	179, 715
MspR9I	CCNGG	1 cut(s)	674
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	4 cut(s)	381, 392, 630, 809
NdeI	CATATG	1 cut(s)	380
NdeII	GATC	1 cut(s)	458
NheI	GCTAGC	1 cut(s)	98
NlaIII	CATG	7 cut(s)	125, 184, 199, 241, 691, 787, 859
NlaIV	GGNNCC	3 cut(s)	56, 460, 580
NmeAIII	GCCGAG	2 cut(s)	495, 498
NmuCI	GTSAC	2 cut(s)	346, 683
NspI	RCATGY	1 cut(s)	125
NspV	TTCGAA	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	4 cut(s)	241, 268, 731, 766
PkrI	GCNGC	2 cut(s)	7, 23
Psp124BI	GAGCTC	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	672
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	3 cut(s)	56, 460, 580
PspPI	GGNCC	1 cut(s)	518
PstNI	CAGNNNCTG	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	458
RsaI	GTAC	3 cut(s)	343, 547, 638
RsaNI	GTAC	3 cut(s)	342, 546, 637
RseI	CAYNNNNRTG	2 cut(s)	179, 715
SacI	GAGCTC	1 cut(s)	741
SaqAI	TTAA	4 cut(s)	11, 47, 300, 363
SatI	GCNGC	2 cut(s)	6, 22
Sau3AI	GATC	1 cut(s)	458
Sau96I	GGNCC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	674
SduI	GDGCHC	2 cut(s)	608, 741
SfuI	TTCGAA	1 cut(s)	227
SmiMI	CAYNNNNRTG	2 cut(s)	179, 715
Sse9I	AATT	5 cut(s)	103, 420, 467, 489, 868
SsiI	CCGC	1 cut(s)	177
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	3 cut(s)	99, 392, 825
SstI	GAGCTC	1 cut(s)	741
StyD4I	CCNGG	1 cut(s)	672
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	3 cut(s)	346, 697, 822
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	2 cut(s)	31, 227
TasI	AATT	5 cut(s)	103, 420, 467, 489, 868
TfiI	GAWTC	4 cut(s)	241, 268, 731, 766
Tru1I	TTAA	4 cut(s)	11, 47, 300, 363
Tru9I	TTAA	4 cut(s)	11, 47, 300, 363
TseFI	GTSAC	2 cut(s)	346, 683
TseI	GCWGC	2 cut(s)	5, 21
Tsp45I	GTSAC	2 cut(s)	346, 683
TspDTI	ATGAA	7 cut(s)	197, 367, 514, 541, 580, 657, 704
VneI	GTGCAC	1 cut(s)	604
XapI	RAATTY	1 cut(s)	420
XceI	RCATGY	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	3 cut(s)	99, 392, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.