Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

33774446 .. 33776665

Gene Structure 2220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCTTTCTATGTTAATACTCTTGGAACTCTTGGTTTCTGATTACATCCTTACTGAAGTGTTTGTATTTATTTTGAATTGTTCCACCACTTTAACTGGGTTCCATTTTTCTGTAACTGCACTCGTTGGCCTCGTCTCCAATGCTAGCGGTTATTCTGCCTTCAAGCATGTTCCCTTTTGGGAGCTTCTTTGGTTCTCCATCGTTGCCAATGTCTCCATCACCGCCATGAACTTCAGCCTCATGCTCAACTCTGTCGGCTTTTACCAGATTTCGAAGTTGAGCATGATTCCCGTGGTTTGTGTGATGGAATGGATTCTTAACAACAAGCAGTATTCCAAGGAGGTTAAAATGTCTGTTGTGGTTGTGGTTATAGGTGTTGGTGTTTGTACCGTGACTGATGTGAAAGTTAACCTCAAAGGCTTCATATGCGCCTGCCTAGCAGTTTTGTCCACTTCTTTCCAGCAAATTTCTATTGGGTCTCTTCAAAAGACACATTCAGTTGGATCCTTTGAATTGCTGAGTAAGACTGCTCCAATTCAAGCCACTTCTCTACTCACTCTCGGCCCATTCATTGATTACATCCTTAGTGGTACATTCATAACAGACTATAAGATGTCTTCTGGTGCCATTGCATTCATTCTTCTTTCGTGCTCCTTAGCTGTGTTTTGCAATATTAGCCAGTACCTCTGTATTGGACGTTTCTCTGCTGTTTCATTCCAGGTTTTAGGTCACATGAAAGCAGTATGTGTCCTTACATTAGGGTGGCTTCTCTTTGATTCAGAGCTCACTTTCAAGAACATTATGGGGATGATTCTTGCAGTCGTTGGCATGGTGATTTATAGTTGGGCTGTCGAGGCAGAAAAACAGTCTGGCAAACCCGTGTCCCATTCAAAAACCAGCATGACAGAAGAGGAAATTGAACTATTGAAGGCAGGACTGGATACCACTACTGTGAAGGATGTTAAACATGGAGCAACTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

328

Amino Acids

35.77

Weight (kDa)

6.98

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	28 - 281	2.7e-17	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	623
AciI	CCGC	2 cut(s)	147, 222
AclWI	GGATC	2 cut(s)	498, 511
AcsI	RAATTY	1 cut(s)	465
AcuI	CTGAAG	2 cut(s)	75, 217
AfaI	GTAC	3 cut(s)	388, 592, 683
AgsI	TTSAA	9 cut(s)	76, 163, 485, 512, 539, 793, 891, 920, 928
AjnI	CCWGG	1 cut(s)	717
AleI	CACNNNNGTG	1 cut(s)	950
AluBI	AGCT	3 cut(s)	184, 659, 784
AluI	AGCT	3 cut(s)	184, 659, 784
Alw21I	GWGCWC	2 cut(s)	653, 786
Alw26I	GTCTC	3 cut(s)	139, 217, 483
AlwI	GGATC	2 cut(s)	498, 511
AoxI	GGCC	2 cut(s)	127, 562
ApoI	RAATTY	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	563
AsuHPI	GGTGA	2 cut(s)	211, 844
AsuII	TTCGAA	1 cut(s)	272
AsuNHI	GCTAGC	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	2 cut(s)	653, 786
BccI	CCATC	3 cut(s)	206, 224, 298
BciT130I	CCWGG	1 cut(s)	719
BciVI	GTATCC	1 cut(s)	934
BcoDI	GTCTC	3 cut(s)	139, 217, 483
BfaI	CTAG	2 cut(s)	144, 437
BfuI	GTATCC	1 cut(s)	934
Bme1390I	CCNGG	1 cut(s)	719
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	3 cut(s)	101, 505, 625
BmrFI	CCNGG	1 cut(s)	719
BmrI	ACTGGG	1 cut(s)	105
BmtI	GCTAGC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	655
Bpu14I	TTCGAA	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	291, 336
Bse1I	ACTGG	3 cut(s)	100, 679, 942
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	719
BseDI	CCNNGG	2 cut(s)	291, 336
BseGI	GGATG	4 cut(s)	45, 579, 813, 964
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	509
BseNI	ACTGG	3 cut(s)	100, 679, 942
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	129, 564
BshNI	GGYRCC	1 cut(s)	623
BsiHKAI	GWGCWC	2 cut(s)	653, 786
BslFI	GGGAC	1 cut(s)	868
BsmAI	GTCTC	3 cut(s)	139, 217, 483
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	868
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	2 cut(s)	129, 564
Bso31I	GGTCTC	1 cut(s)	483
Bsp119I	TTCGAA	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	653, 786
Bsp143I	GATC	1 cut(s)	503
BspACI	CCGC	2 cut(s)	147, 222
BspANI	GGCC	2 cut(s)	129, 564
BspCNI	CTCAG	1 cut(s)	510
BspLI	GGNNCC	3 cut(s)	101, 505, 625
BspOI	GCTAGC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	498, 511
BspT104I	TTCGAA	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	3 cut(s)	100, 679, 942
BssECI	CCNNGG	2 cut(s)	291, 336
BssMI	GATC	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	3 cut(s)	391, 867, 952
Bst6I	CTCTTC	2 cut(s)	486, 903
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	145, 433
BstDEI	CTNAG	3 cut(s)	518, 584, 655
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	4 cut(s)	45, 579, 813, 964
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	1 cut(s)	506
BstMAI	GTCTC	3 cut(s)	139, 217, 483
BstMBI	GATC	1 cut(s)	503
BstMWI	GCNNNNNNNGC	4 cut(s)	426, 437, 675, 854
BstNI	CCWGG	1 cut(s)	719
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	717
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BsuI	GTATCC	1 cut(s)	934
BsuRI	GGCC	2 cut(s)	129, 564
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	4 cut(s)	45, 579, 813, 964
Cac8I	GCNNGC	2 cut(s)	145, 433
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	563
Csp6I	GTAC	3 cut(s)	387, 591, 682
CviAII	CATG	8 cut(s)	167, 226, 241, 283, 733, 829, 901, 968
CviQI	GTAC	3 cut(s)	387, 591, 682
DdeI	CTNAG	3 cut(s)	518, 584, 655
DpnI	GATC	1 cut(s)	505
DpnII	GATC	1 cut(s)	503
Eam1104I	CTCTTC	2 cut(s)	486, 903
EarI	CTCTTC	2 cut(s)	486, 903
Ecl136II	GAGCTC	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	483
Eco53kI	GAGCTC	1 cut(s)	784
Eco57I	CTGAAG	2 cut(s)	75, 217
EcoICRI	GAGCTC	1 cut(s)	784
EcoRII	CCWGG	1 cut(s)	717
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	336
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	8 cut(s)	170, 229, 244, 286, 736, 832, 904, 971
FaqI	GGGAC	1 cut(s)	868
FatI	CATG	8 cut(s)	166, 225, 240, 282, 732, 828, 900, 967
FauNDI	CATATG	1 cut(s)	425
FokI	GGATG	4 cut(s)	32, 566, 820, 971
FriOI	GRGCYC	1 cut(s)	786
FspBI	CTAG	2 cut(s)	144, 437
GlaI	GCGC	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	129, 564
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	8 cut(s)	170, 229, 244, 286, 736, 832, 904, 971
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	4 cut(s)	286, 313, 776, 811
HpaI	GTTAAC	1 cut(s)	409
HphI	GGTGA	2 cut(s)	211, 844
Hpy166II	GTNNAC	2 cut(s)	409, 450
Hpy188I	TCNGA	2 cut(s)	40, 781
Hpy188III	TCNNGA	1 cut(s)	793
Hpy8I	GTNNAC	2 cut(s)	409, 450
HpyAV	CCTTC	3 cut(s)	169, 922, 949
HpyCH4III	ACNGT	3 cut(s)	391, 867, 952
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	4 cut(s)	119, 632, 669, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	426, 437, 675, 854
HpyF3I	CTNAG	3 cut(s)	518, 584, 655
HpySE526I	ACGT	1 cut(s)	697
Hsp92II	CATG	8 cut(s)	170, 229, 244, 286, 736, 832, 904, 971
HspAI	GCGC	1 cut(s)	429
KspAI	GTTAAC	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	503
LmnI	GCTCC	4 cut(s)	181, 535, 656, 971
MaeI	CTAG	2 cut(s)	144, 437
MaeII	ACGT	1 cut(s)	697
MaeIII	GTNAC	3 cut(s)	112, 391, 728
MalI	GATC	1 cut(s)	505
MboI	GATC	1 cut(s)	503
MboII	GAAGA	4 cut(s)	473, 609, 632, 920
MflI	RGATCY	1 cut(s)	503
MhlI	GDGCHC	2 cut(s)	653, 786
MluCI	AATT	5 cut(s)	76, 465, 512, 534, 915
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	7 cut(s)	140, 248, 334, 422, 695, 847, 904
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	6 cut(s)	14, 92, 318, 345, 408, 963
MslI	CAYNNNNRTG	3 cut(s)	224, 760, 950
MspR9I	CCNGG	1 cut(s)	719
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	719
MwoI	GCNNNNNNNGC	4 cut(s)	426, 437, 675, 854
NdeI	CATATG	1 cut(s)	425
NdeII	GATC	1 cut(s)	503
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	8 cut(s)	170, 229, 244, 286, 736, 832, 904, 971
NlaIV	GGNNCC	3 cut(s)	101, 505, 625
NmeAIII	GCCGAG	1 cut(s)	540
NmuCI	GTSAC	2 cut(s)	391, 728
NspI	RCATGY	1 cut(s)	170
NspV	TTCGAA	1 cut(s)	272
OliI	CACNNNNGTG	1 cut(s)	950
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	4 cut(s)	286, 313, 776, 811
Psp124BI	GAGCTC	1 cut(s)	786
Psp6I	CCWGG	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	3 cut(s)	101, 505, 625
PspPI	GGNCC	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	503
RsaI	GTAC	3 cut(s)	388, 592, 683
RsaNI	GTAC	3 cut(s)	387, 591, 682
RseI	CAYNNNNRTG	3 cut(s)	224, 760, 950
SacI	GAGCTC	1 cut(s)	786
SaqAI	TTAA	6 cut(s)	14, 92, 318, 345, 408, 963
Sau3AI	GATC	1 cut(s)	503
Sau96I	GGNCC	1 cut(s)	563
ScrFI	CCNGG	1 cut(s)	719
SduI	GDGCHC	2 cut(s)	653, 786
SfuI	TTCGAA	1 cut(s)	272
SmiMI	CAYNNNNRTG	3 cut(s)	224, 760, 950
Sse9I	AATT	5 cut(s)	76, 465, 512, 534, 915
SsiI	CCGC	2 cut(s)	147, 222
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	2 cut(s)	144, 437
SstI	GAGCTC	1 cut(s)	786
StyD4I	CCNGG	1 cut(s)	717
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	3 cut(s)	391, 867, 952
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	2 cut(s)	272, 852
TasI	AATT	5 cut(s)	76, 465, 512, 534, 915
TfiI	GAWTC	4 cut(s)	286, 313, 776, 811
Tru1I	TTAA	6 cut(s)	14, 92, 318, 345, 408, 963
Tru9I	TTAA	6 cut(s)	14, 92, 318, 345, 408, 963
TseFI	GTSAC	2 cut(s)	391, 728
Tsp45I	GTSAC	2 cut(s)	391, 728
TspDTI	ATGAA	7 cut(s)	242, 412, 559, 586, 625, 702, 749
XapI	RAATTY	1 cut(s)	465
XceI	RCATGY	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	144, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.