Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

14927552 .. 14930810

Gene Structure 3259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17260.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGAAGGAAAAGAAGTCGCCAGTTTCTGATGTGGGAGCATGGGGCATGAATATTGTGAGCTCCGTGGGCATTATCATGGCCAACAAGCAGCTTATGTCCCCTGCTGGCTTTGCTTTTGGTTTTGCTACAACTTTGACTGGCTTCCACTTCTCTGTTACTGCATTGGTCGGTTTCATCTCGAATGCATCTGGGTACTCAGCATCAAAACATATTCCTCTGTGGGAACTGATTTGGTTCTCACTTGTAGCCAATGCCTCAATCACCGGGATGAACTTGAGTCTCATGCTTAACTCTGTCGGGTTTTATCAGATATCGAAGTTGAGCATGATTCCAGTGGTCTGTGTGATGGAGTGGATTATCCATGGTAAAAATTTCTCAAGGGAAGTCAAGATCGCTGTGGCAGTGGTGGTAATAGGTGTGGGCATATGTACCGTGACTGATGTTAAAGTTAATGCCAAAGGTTTTCTCTGTGCATGTGTGGCCATCTTGTGTACATCATTACAACAAATTTCAATAGGTTCGTTACAGAAGAAATACTCAGTAGGCTCTTTTGAATTGCTCAGCAAGACGGCTCCGATTCAAGCTATATCCCTTCTCATTCTTGGTCCATTCGTTGATTACTTTCTTACTGGAAAACTTTTAACAGAGTACAAGTTGACTTCTGGTGCATTTGCTTTCATACTACTCTCATGCTCCCTAGCGGTATTCTGTAACATCAGTCAGTACCTCTGCATCGGAAGATTCTCAGCCGTGTCATTCCAGGTTTTAGGCCACATGAAGACCGTCTGTGTCTTGACATTGGGGTGGCTACTCTTTGATTCATCGCTTGGATTTAAGAACTTAATGGGAATGGCTCTTGCAGTTGTCGGCATGATAGTATACAGTTGGGCTGTAGAGGGTGAGAAGCTAACTAAGACTTCCCTCCCAACCTCTCTCACAGAAGAAGATCTAAAACCACTGAAAGAGGGAATTGCAGAAACCCCATTGAATGATTCCGGTGATGATTCTCTGTCTGTGTATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

343

Amino Acids

36.78

Weight (kDa)

7.5

Isoelectric Point (pI)

27.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	22 - 296	6.6e-20	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	882
AciI	CCGC	1 cut(s)	704
AcoI	YGGCCR	2 cut(s)	81, 483
AcsI	RAATTY	2 cut(s)	373, 510
AfaI	GTAC	5 cut(s)	197, 433, 496, 653, 728
AgsI	TTSAA	4 cut(s)	516, 557, 584, 991
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	4 cut(s)	63, 94, 587, 910
AluI	AGCT	4 cut(s)	63, 94, 587, 910
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	287
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	3 cut(s)	81, 483, 772
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	373, 510
AspS9I	GGNCC	1 cut(s)	608
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	3 cut(s)	256, 914, 1013
AvaII	GGWCC	1 cut(s)	608
BalI	TGGCCA	2 cut(s)	83, 485
BanII	GRGCYC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	343, 494
BceAI	ACGGC	2 cut(s)	588, 737
BciT130I	CCWGG	1 cut(s)	764
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	1 cut(s)	894
BglII	AGATCT	1 cut(s)	949
BisI	GCNGC	1 cut(s)	92
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	2 cut(s)	268, 764
Bme18I	GGWCC	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	2 cut(s)	268, 764
BmsI	GCATC	3 cut(s)	197, 212, 744
BpiI	GAAGAC	1 cut(s)	788
Bpu1102I	GCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	2 cut(s)	298, 364
BpuMI	CCSGG	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	66, 364
BsaWI	WCCGGW	1 cut(s)	998
Bse1I	ACTGG	4 cut(s)	23, 145, 335, 637
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	2 cut(s)	66, 364
BseGI	GGATG	1 cut(s)	276
BseMII	CTCAG	4 cut(s)	213, 555, 577, 762
BseNI	ACTGG	4 cut(s)	23, 145, 335, 637
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	3 cut(s)	83, 485, 774
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	267, 999
BslFI	GGGAC	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	83, 485, 774
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	393, 949
Bsp1720I	GCTNAGC	1 cut(s)	563
Bsp19I	CCATGG	1 cut(s)	364
BspACI	CCGC	1 cut(s)	704
BspANI	GGCC	3 cut(s)	83, 485, 774
BspCNI	CTCAG	4 cut(s)	212, 554, 576, 761
BspLI	GGNNCC	1 cut(s)	576
BsrGI	TGTACA	1 cut(s)	494
BsrI	ACTGG	4 cut(s)	23, 145, 335, 637
BssECI	CCNNGG	2 cut(s)	66, 364
BssMI	GATC	2 cut(s)	393, 949
BssNAI	GTATAC	1 cut(s)	883
BssT1I	CCWWGG	1 cut(s)	364
Bst1107I	GTATAC	1 cut(s)	883
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	3 cut(s)	436, 787, 887
BstAUI	TGTACA	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	5 cut(s)	199, 541, 563, 748, 915
BstDSI	CCRYGG	2 cut(s)	66, 364
BstF5I	GGATG	1 cut(s)	276
BstKTI	GATC	2 cut(s)	396, 952
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	2 cut(s)	393, 949
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 113, 482
BstNI	CCWGG	1 cut(s)	764
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	2 cut(s)	266, 762
BstSFI	CTRYAG	1 cut(s)	894
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BstZ17I	GTATAC	1 cut(s)	883
BsuRI	GGCC	3 cut(s)	83, 485, 774
BtgI	CCRYGG	2 cut(s)	66, 364
BtgZI	GCGATG	1 cut(s)	810
BtsCI	GGATG	1 cut(s)	276
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	3 cut(s)	342, 411, 959
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	608
Csp6I	GTAC	5 cut(s)	196, 432, 495, 652, 727
CviQI	GTAC	5 cut(s)	196, 432, 495, 652, 727
DdeI	CTNAG	5 cut(s)	199, 541, 563, 748, 915
DpnI	GATC	2 cut(s)	395, 951
DpnII	GATC	2 cut(s)	393, 949
EaeI	YGGCCR	2 cut(s)	81, 483
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	608
Eco53kI	GAGCTC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	762
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	364
FaqI	GGGAC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	428
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	283
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	701
GluI	GCNGC	1 cut(s)	92
HaeIII	GGCC	3 cut(s)	83, 485, 774
HapII	CCGG	2 cut(s)	267, 999
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HinfI	GANTC	7 cut(s)	280, 331, 580, 744, 821, 995, 1007
HpaII	CCGG	2 cut(s)	267, 999
HphI	GGTGA	3 cut(s)	256, 914, 1013
Hpy166II	GTNNAC	3 cut(s)	495, 660, 883
Hpy188I	TCNGA	4 cut(s)	31, 312, 579, 740
Hpy188III	TCNNGA	3 cut(s)	181, 391, 796
Hpy8I	GTNNAC	3 cut(s)	495, 660, 883
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	3 cut(s)	436, 787, 887
HpyCH4V	TGCA	7 cut(s)	164, 188, 476, 671, 735, 863, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 113, 482
HpyF3I	CTNAG	5 cut(s)	199, 541, 563, 748, 915
Kzo9I	GATC	2 cut(s)	393, 949
LmnI	GCTCC	4 cut(s)	38, 68, 580, 701
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	3 cut(s)	197, 212, 744
MaeI	CTAG	1 cut(s)	701
MaeIII	GTNAC	4 cut(s)	157, 436, 525, 713
MalI	GATC	2 cut(s)	395, 951
MboI	GATC	2 cut(s)	393, 949
MboII	GAAGA	5 cut(s)	544, 753, 793, 956, 959
MflI	RGATCY	1 cut(s)	949
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	2 cut(s)	83, 485
MluCI	AATT	4 cut(s)	373, 510, 557, 972
MluNI	TGGCCA	2 cut(s)	83, 485
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	228, 268, 740, 892, 935, 943, 961
Mox20I	TGGCCA	2 cut(s)	83, 485
Mph1103I	ATGCAT	1 cut(s)	190
MscI	TGGCCA	2 cut(s)	83, 485
MseI	TTAA	6 cut(s)	291, 447, 453, 644, 837, 845
MslI	CAYNNNNRTG	3 cut(s)	77, 269, 805
Msp20I	TGGCCA	2 cut(s)	83, 485
MspI	CCGG	2 cut(s)	267, 999
MspR9I	CCNGG	2 cut(s)	268, 764
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	764
MwoI	GCNNNNNNNGC	3 cut(s)	69, 113, 482
NciI	CCSGG	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	364
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	2 cut(s)	393, 949
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	1 cut(s)	480
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	6 cut(s)	331, 580, 744, 821, 995, 1007
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	762
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	608
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	949
RsaI	GTAC	5 cut(s)	197, 433, 496, 653, 728
RsaNI	GTAC	5 cut(s)	196, 432, 495, 652, 727
RseI	CAYNNNNRTG	3 cut(s)	77, 269, 805
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	6 cut(s)	291, 447, 453, 644, 837, 845
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	393, 949
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	268, 764
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	3 cut(s)	197, 212, 744
SfcI	CTRYAG	1 cut(s)	894
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	3 cut(s)	77, 269, 805
SmlI	CTYRAG	2 cut(s)	277, 379
SmoI	CTYRAG	2 cut(s)	277, 379
Sse9I	AATT	4 cut(s)	373, 510, 557, 972
SsiI	CCGC	1 cut(s)	704
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	1 cut(s)	701
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	266, 762
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	3 cut(s)	436, 787, 887
TaqI	TCGA	2 cut(s)	182, 317
TasI	AATT	4 cut(s)	373, 510, 557, 972
TatI	WGTACW	2 cut(s)	494, 651
TfiI	GAWTC	6 cut(s)	331, 580, 744, 821, 995, 1007
Tru1I	TTAA	6 cut(s)	291, 447, 453, 644, 837, 845
Tru9I	TTAA	6 cut(s)	291, 447, 453, 644, 837, 845
TscAI	CASTG	3 cut(s)	342, 411, 966
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	6 cut(s)	65, 166, 287, 670, 794, 813
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	3 cut(s)	342, 411, 966
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	2 cut(s)	373, 510
XceI	RCATGY	1 cut(s)	480
XmiI	GTMKAC	1 cut(s)	882
XspI	CTAG	1 cut(s)	701
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.