Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Forward (+)

16968655 .. 16970527

Gene Structure 1873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCGGCGGAGAATGAGAGAAAATCTCCTTCAGCAGTCTCCGATATGGGAGCTTGGGCAATGAATGTGATAAGCTCCGTTGGAATCATCATGGCGAATAAACAACTTATGTCCTCTTCTGGATTCGCATTTAGTTTCGCTACAACTCTCACCGGTTTCCACTTCGCTTTAACCGCATTGGTCGGTATGGTATCAAACGCTACCGGATTCTCTGCTTCGAAGCATGTACCTATGTGGGAGCTTATTTGGTTCTCCATTGTCGCTAATGTCTCTATTGCTGCTATGAACTTCAGTCTCATGCTCAATTCCGTTGGCTTCTACCAAATCTCGAAGCTGAGCATGATTCCTGTGGTATGTGTAATGGAATGGATTCTACATAGCAAGAGATACTCAAGAGAAGTGAAAATATCTGTTGTGGTTGTTGTTGTTGGTGTTGGTATTTGTACTGTGACTGATGTTAAAGTTAATGCCAAAGGTTTTATCTGTGCTTGTGTTGCGATTTTCTCGTCATCCTTGCAGCAAATTTTAATAGGTTCTCTACAGAAGAAATATTCAATTGGGTCCTTTGAGTTGTTGAGTAAAACAGCGCCGATTCAAGCTTTTTCGCTTCTTGTTGTCGGTCCTTTAGTTGATTATCTTCTTAGTGGGAAGTTCATTATGAAGTATAATATGTCTTCCGGTTGCTTTCTATTCATTCTTCTCTCATGTGGTCTAGCTGTGTTCTGCAACATAAGCCAGTACCTTTGCATCGGGCGGTTTTCAGCAGTATCGTTCCAAGTTATTGGTCACATGAAAACCGTCTGTATCCTCACGCTTGGATGGCTCCTATTTGATTCTGCAATGACTTTCAAAAACGTAGCGGGGATGATTGTTGCGATTGTTGGGATGGTAATCTATAGTTGGGCAATGGAATTGGAGAAACAGTCGATTATTGCAGCAAAGGCTTTAAACAGTGTGAAACATAGCTTAACAGAGGAAGAGTTTGAACTTTTGAAGGAAGGTGTAGAAACTACACAATCAAAAGATGTTGAACTTGGCCGCACAAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

350

Amino Acids

38.06

Weight (kDa)

8.66

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	129 - 233	9.4e-06	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	5, 8, 174, 754, 860, 1039
AcoI	YGGCCR	1 cut(s)	1036
AcsI	RAATTY	1 cut(s)	522
AcuI	CTGAAG	2 cut(s)	15, 274
AfaI	GTAC	3 cut(s)	228, 445, 740
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	6 cut(s)	555, 596, 850, 986, 994, 1031
AluBI	AGCT	7 cut(s)	53, 75, 241, 334, 599, 716, 966
AluI	AGCT	7 cut(s)	53, 75, 241, 334, 599, 716, 966
Alw26I	GTCTC	3 cut(s)	43, 274, 299
AoxI	GGCC	1 cut(s)	1036
ApeKI	GCWGC	3 cut(s)	278, 517, 935
ApoI	RAATTY	1 cut(s)	522
AsiGI	ACCGGT	1 cut(s)	152
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	2 cut(s)	561, 620
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	561, 620
BbsI	GAAGAC	1 cut(s)	666
BbvI	GCAGC	3 cut(s)	265, 529, 947
BccI	CCATC	2 cut(s)	813, 880
BciVI	GTATCC	1 cut(s)	815
BcoDI	GTCTC	3 cut(s)	43, 274, 299
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	2 cut(s)	539, 895
BfoI	RGCGCY	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	815
BisI	GCNGC	5 cut(s)	6, 279, 518, 936, 1039
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	5 cut(s)	7, 280, 519, 937, 1040
Bme18I	GGWCC	2 cut(s)	561, 620
BmgT120I	GGNCC	2 cut(s)	561, 620
BmiI	GGNNCC	2 cut(s)	562, 824
BmsI	GCATC	1 cut(s)	756
BpiI	GAAGAC	1 cut(s)	666
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
Bpu1102I	GCTNAGC	1 cut(s)	335
Bpu14I	TTCGAA	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	890
BsaWI	WCCGGW	3 cut(s)	152, 203, 677
BsaXI	ACNNNNNCTCC	2 cut(s)	908, 938
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	3 cut(s)	66, 846, 912
Bse8I	GATNNNNATC	1 cut(s)	890
BseGI	GGATG	4 cut(s)	509, 824, 870, 891
BseJI	GATNNNNATC	1 cut(s)	890
BseMI	GCAATG	3 cut(s)	66, 846, 912
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	736
BseXI	GCAGC	3 cut(s)	265, 529, 947
BshFI	GGCC	1 cut(s)	1038
BshTI	ACCGGT	1 cut(s)	152
BsiSI	CCGG	3 cut(s)	153, 204, 678
BsmAI	GTCTC	3 cut(s)	43, 274, 299
BsnI	GGCC	1 cut(s)	1038
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1720I	GCTNAGC	1 cut(s)	335
BspACI	CCGC	6 cut(s)	5, 8, 174, 754, 860, 1039
BspANI	GGCC	1 cut(s)	1038
BspCNI	CTCAG	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	562, 824
BspT104I	TTCGAA	1 cut(s)	218
BsrDI	GCAATG	3 cut(s)	66, 846, 912
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	152
Bst4CI	ACNGT	4 cut(s)	448, 799, 924, 953
Bst6I	CTCTTC	2 cut(s)	121, 972
BstBI	TTCGAA	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	335, 641
BstF5I	GGATG	4 cut(s)	509, 824, 870, 891
BstH2I	RGCGCY	1 cut(s)	590
BstHHI	GCGC	1 cut(s)	589
BstMAI	GTCTC	3 cut(s)	43, 274, 299
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 494, 732, 820, 941
BstNSI	RCATGY	1 cut(s)	227
BstSFI	CTRYAG	2 cut(s)	539, 895
BstV1I	GCAGC	3 cut(s)	265, 529, 947
BstV2I	GAAGAC	1 cut(s)	666
BstXI	CCANNNNNNTGG	1 cut(s)	782
BsuI	GTATCC	1 cut(s)	815
BsuRI	GGCC	1 cut(s)	1038
BtsCI	GGATG	4 cut(s)	509, 824, 870, 891
BtsIMutI	CAGTG	1 cut(s)	958
CfoI	GCGC	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	561, 620
Csp6I	GTAC	3 cut(s)	227, 444, 739
CspAI	ACCGGT	1 cut(s)	152
CviAII	CATG	6 cut(s)	91, 224, 298, 340, 705, 790
CviQI	GTAC	3 cut(s)	227, 444, 739
DdeI	CTNAG	2 cut(s)	335, 641
DraI	TTTAAA	1 cut(s)	948
EaeI	YGGCCR	1 cut(s)	1036
Eam1104I	CTCTTC	2 cut(s)	121, 972
EarI	CTCTTC	2 cut(s)	121, 972
EciI	GGCGGA	1 cut(s)	23
Eco47I	GGWCC	2 cut(s)	561, 620
Eco57I	CTGAAG	2 cut(s)	15, 274
EcoO109I	RGGNCCY	1 cut(s)	561
FaeI	CATG	6 cut(s)	94, 227, 301, 343, 708, 793
FatI	CATG	6 cut(s)	90, 223, 297, 339, 704, 789
FauI	CCCGC	1 cut(s)	853
Fnu4HI	GCNGC	5 cut(s)	6, 279, 518, 936, 1039
FokI	GGATG	4 cut(s)	496, 831, 877, 898
Fsp4HI	GCNGC	5 cut(s)	6, 279, 518, 936, 1039
FspBI	CTAG	1 cut(s)	713
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	5 cut(s)	6, 279, 518, 936, 1039
HaeII	RGCGCY	1 cut(s)	590
HaeIII	GGCC	1 cut(s)	1038
HapII	CCGG	3 cut(s)	153, 204, 678
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	6 cut(s)	94, 227, 301, 343, 708, 793
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	7 cut(s)	84, 123, 207, 343, 370, 592, 833
HpaII	CCGG	3 cut(s)	153, 204, 678
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	3 cut(s)	120, 328, 393
HpyAV	CCTTC	3 cut(s)	39, 988, 992
HpyCH4III	ACNGT	4 cut(s)	448, 799, 924, 953
HpyCH4IV	ACGT	1 cut(s)	855
HpyCH4V	TGCA	5 cut(s)	517, 726, 747, 839, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 494, 732, 820, 941
HpyF3I	CTNAG	2 cut(s)	335, 641
HpySE526I	ACGT	1 cut(s)	855
Hsp92II	CATG	6 cut(s)	94, 227, 301, 343, 708, 793
HspAI	GCGC	1 cut(s)	587
LmnI	GCTCC	4 cut(s)	50, 80, 238, 828
LpnPI	CCDG	6 cut(s)	105, 166, 217, 360, 691, 749
Lsp1109I	GCAGC	3 cut(s)	265, 529, 947
LweI	GCATC	1 cut(s)	756
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	1 cut(s)	855
MaeIII	GTNAC	2 cut(s)	448, 785
MboII	GAAGA	6 cut(s)	108, 556, 629, 666, 689, 989
MfeI	CAATTG	1 cut(s)	555
MluCI	AATT	4 cut(s)	304, 522, 555, 911
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	3 cut(s)	124, 818, 967
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	6 cut(s)	170, 459, 465, 527, 947, 968
MspI	CCGG	3 cut(s)	153, 204, 678
MunI	CAATTG	1 cut(s)	555
MwoI	GCNNNNNNNGC	5 cut(s)	173, 494, 732, 820, 941
NlaIII	CATG	6 cut(s)	94, 227, 301, 343, 708, 793
NlaIV	GGNNCC	2 cut(s)	562, 824
NmuCI	GTSAC	2 cut(s)	448, 785
NspI	RCATGY	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	7 cut(s)	84, 123, 207, 343, 370, 592, 833
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	5 cut(s)	7, 280, 519, 937, 1040
PpuMI	RGGWCCY	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	561
PspN4I	GGNNCC	2 cut(s)	562, 824
PspPI	GGNCC	2 cut(s)	561, 620
PspPPI	RGGWCCY	1 cut(s)	561
RsaI	GTAC	3 cut(s)	228, 445, 740
RsaNI	GTAC	3 cut(s)	227, 444, 739
SaqAI	TTAA	6 cut(s)	170, 459, 465, 527, 947, 968
SatI	GCNGC	5 cut(s)	6, 279, 518, 936, 1039
Sau96I	GGNCC	2 cut(s)	561, 620
SfaNI	GCATC	1 cut(s)	756
SfcI	CTRYAG	2 cut(s)	539, 895
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	2 cut(s)	561, 620
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	4 cut(s)	304, 522, 555, 911
SsiI	CCGC	6 cut(s)	5, 8, 174, 754, 860, 1039
SspI	AATATT	1 cut(s)	551
SspMI	CTAG	1 cut(s)	713
TaaI	ACNGT	4 cut(s)	448, 799, 924, 953
TaiI	ACGT	1 cut(s)	858
TaqI	TCGA	3 cut(s)	218, 329, 926
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	4 cut(s)	304, 522, 555, 911
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	2 cut(s)	8, 1041
TfiI	GAWTC	7 cut(s)	84, 123, 207, 343, 370, 592, 833
Tru1I	TTAA	6 cut(s)	170, 459, 465, 527, 947, 968
Tru9I	TTAA	6 cut(s)	170, 459, 465, 527, 947, 968
TscAI	CASTG	1 cut(s)	958
TseFI	GTSAC	2 cut(s)	448, 785
TseI	GCWGC	3 cut(s)	278, 517, 935
Tsp45I	GTSAC	2 cut(s)	448, 785
TspDTI	ATGAA	6 cut(s)	77, 299, 643, 674, 682, 806
TspGWI	ACGGA	2 cut(s)	67, 298
TspRI	CASTG	1 cut(s)	958
VpaK11BI	GGWCC	2 cut(s)	561, 620
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.