Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012998.1

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

219 .. 1974

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012998.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ctgtaccggatctcagccctcttggaagggaggagtgacgacgtcgtttttggcggaatggaagtcggccagaagaaatcgtcggcggcagtttccgatgtgggagcgtgggccatgaacgtcatcagctccgtcgggattatcatggccaacaagcagctcatgtccaacgccggctatgctttctctttcgcgaccactttaactgggttccatttttctgtaaccgcactcgttggcctcgtctccaatgctagcggttattctgcctccaagcatgttcccttttgggagcttctttggttctccatcgttgccaatgtctccatcaccgccatgaacttcagcctcatgctcaactctgtcggcttttaccagatttccaagttgagcatgattcccgtggtttgtgtgatggaatggattcttaacaacaagcagtattccaaggaggttaaagtggctgttgtggttgtggttataggtgttggtgtttgtactgtgactgatgtgaaagttaacctcaaaggcttcatatgcgcctgcctagcagttttgtccacttctttccagcaaatttctatcgggtctcttcaaaagaaacattcagttggatcctttgaattgctgagtaagactgctccaattcaagccacttctctactcattctcggcccattcattgattacatccttggtggtacattcataacagactataagatgtcttctggtgccattgcattcattcttctttcgtgcaccttagctgtgttttgcaatattagccagtacctctgtattggacgtttctctgctgtttcattccaggttttaggtcacatgaaagcagtatgtgtccttacatggcttctctttgattcagagctcactttcaagaacattatggggatgattcttgcagtcgttggcatggtgatttatagttgggctgtcgaggcagaaaaacagtctggcaaacccgtgtcccattcaaaaaccagcatgacagaagaggaaattgaacttttgaaggcaggactggataccactactgtgaaggatgttgaacatggagcgaataaagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

363

Amino Acids

39.11

Weight (kDa)

8.09

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	734
AccII	CGCG	1 cut(s)	194
AciI	CCGC	5 cut(s)	54, 86, 228, 258, 333
AclWI	GGATC	3 cut(s)	17, 609, 622
AcoI	YGGCCR	2 cut(s)	67, 147
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	4 cut(s)	5, 499, 703, 794
AgsI	TTSAA	8 cut(s)	596, 623, 650, 898, 996, 1025, 1033, 1070
AjnI	CCWGG	1 cut(s)	828
AleI	CACNNNNGTG	1 cut(s)	1055
AluBI	AGCT	5 cut(s)	129, 160, 295, 770, 889
AluI	AGCT	5 cut(s)	129, 160, 295, 770, 889
Alw21I	GWGCWC	2 cut(s)	764, 891
Alw26I	GTCTC	3 cut(s)	250, 328, 594
Alw44I	GTGCAC	1 cut(s)	760
AlwI	GGATC	3 cut(s)	17, 609, 622
AoxI	GGCC	5 cut(s)	67, 111, 147, 238, 673
ApaLI	GTGCAC	1 cut(s)	760
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	576
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	111, 674
AsuHPI	GGTGA	2 cut(s)	322, 949
AsuNHI	GCTAGC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	764
BalI	TGGCCA	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	891
BbsI	GAAGAC	1 cut(s)	720
Bbv12I	GWGCWC	2 cut(s)	764, 891
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	317, 335, 409
BciT130I	CCWGG	1 cut(s)	830
BciVI	GTATCC	1 cut(s)	1039
BcoDI	GTCTC	3 cut(s)	250, 328, 594
BfaI	CTAG	2 cut(s)	255, 548
BfuI	GTATCC	1 cut(s)	1039
BisI	GCNGC	2 cut(s)	87, 158
BlsI	GCNGC	2 cut(s)	88, 159
Bme1390I	CCNGG	1 cut(s)	830
BmgT120I	GGNCC	2 cut(s)	111, 674
BmiI	GGNNCC	3 cut(s)	212, 616, 736
BmrFI	CCNGG	1 cut(s)	830
BmrI	ACTGGG	1 cut(s)	216
BmtI	GCTAGC	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	720
Bpu10I	CCTNAGC	1 cut(s)	766
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	594
BsaJI	CCNNGG	3 cut(s)	402, 447, 694
BsaWI	WCCGGW	1 cut(s)	6
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	3 cut(s)	211, 790, 1047
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	830
BseDI	CCNNGG	3 cut(s)	402, 447, 694
BseGI	GGATG	3 cut(s)	690, 918, 1069
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	2 cut(s)	27, 620
BseNI	ACTGG	3 cut(s)	211, 790, 1047
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	764
BseXI	GCAGC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	5 cut(s)	69, 113, 149, 240, 675
BshNI	GGYRCC	1 cut(s)	734
BsiHKAI	GWGCWC	2 cut(s)	764, 891
BsiSI	CCGG	2 cut(s)	7, 174
BslFI	GGGAC	1 cut(s)	973
BsmAI	GTCTC	3 cut(s)	250, 328, 594
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	973
BsmI	GAATGC	1 cut(s)	743
BsnI	GGCC	5 cut(s)	69, 113, 149, 240, 675
Bso31I	GGTCTC	1 cut(s)	594
Bsp1286I	GDGCHC	2 cut(s)	764, 891
Bsp143I	GATC	2 cut(s)	9, 614
Bsp68I	TCGCGA	1 cut(s)	194
BspACI	CCGC	5 cut(s)	54, 86, 228, 258, 333
BspANI	GGCC	5 cut(s)	69, 113, 149, 240, 675
BspCNI	CTCAG	2 cut(s)	26, 621
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	3 cut(s)	212, 616, 736
BspOI	GCTAGC	1 cut(s)	258
BspPI	GGATC	3 cut(s)	17, 609, 622
BspT107I	GGYRCC	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	594
BsrDI	GCAATG	1 cut(s)	738
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	3 cut(s)	211, 790, 1047
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	3 cut(s)	402, 447, 694
BssMI	GATC	2 cut(s)	9, 614
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	447, 694
Bst2UI	CCWGG	1 cut(s)	830
Bst4CI	ACNGT	3 cut(s)	502, 972, 1057
Bst6I	CTCTTC	2 cut(s)	597, 1008
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	3 cut(s)	175, 256, 544
BstDEI	CTNAG	3 cut(s)	13, 629, 766
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	690, 918, 1069
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	2 cut(s)	12, 617
BstMAI	GTCTC	3 cut(s)	250, 328, 594
BstMBI	GATC	2 cut(s)	9, 614
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 537, 548, 786, 959
BstNI	CCWGG	1 cut(s)	830
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	828
BstSLI	GKGCMC	1 cut(s)	764
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	720
BstX2I	RGATCY	2 cut(s)	9, 614
BstYI	RGATCY	2 cut(s)	9, 614
BsuI	GTATCC	1 cut(s)	1039
BsuRI	GGCC	5 cut(s)	69, 113, 149, 240, 675
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	690, 918, 1069
BtuMI	TCGCGA	1 cut(s)	194
Cac8I	GCNNGC	3 cut(s)	175, 256, 544
CfoI	GCGC	1 cut(s)	542
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	111, 674
Csp6I	GTAC	4 cut(s)	4, 498, 702, 793
CviQI	GTAC	4 cut(s)	4, 498, 702, 793
DdeI	CTNAG	3 cut(s)	13, 629, 766
DpnI	GATC	2 cut(s)	11, 616
DpnII	GATC	2 cut(s)	9, 614
EaeI	YGGCCR	2 cut(s)	67, 147
Eam1104I	CTCTTC	2 cut(s)	597, 1008
EarI	CTCTTC	2 cut(s)	597, 1008
EciI	GGCGGA	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	889
Eco130I	CCWWGG	2 cut(s)	447, 694
Eco24I	GRGCYC	1 cut(s)	891
Eco31I	GGTCTC	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	889
Eco57I	CTGAAG	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	889
EcoRII	CCWGG	1 cut(s)	828
EcoT14I	CCWWGG	2 cut(s)	447, 694
EcoT38I	GRGCYC	1 cut(s)	891
ErhI	CCWWGG	2 cut(s)	447, 694
Esp3I	CGTCTC	1 cut(s)	250
FaqI	GGGAC	1 cut(s)	973
FauNDI	CATATG	1 cut(s)	536
Fnu4HI	GCNGC	2 cut(s)	87, 158
FokI	GGATG	3 cut(s)	677, 925, 1076
FriOI	GRGCYC	1 cut(s)	891
Fsp4HI	GCNGC	2 cut(s)	87, 158
FspBI	CTAG	2 cut(s)	255, 548
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	2 cut(s)	87, 158
HaeIII	GGCC	5 cut(s)	69, 113, 149, 240, 675
HapII	CCGG	2 cut(s)	7, 174
HhaI	GCGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	4 cut(s)	397, 424, 881, 916
HpaI	GTTAAC	1 cut(s)	520
HpaII	CCGG	2 cut(s)	7, 174
HphI	GGTGA	2 cut(s)	322, 949
Hpy166II	GTNNAC	3 cut(s)	520, 561, 762
Hpy188I	TCNGA	2 cut(s)	97, 886
Hpy188III	TCNNGA	3 cut(s)	136, 193, 898
Hpy8I	GTNNAC	3 cut(s)	520, 561, 762
Hpy99I	CGWCG	4 cut(s)	44, 47, 85, 137
HpyAV	CCTTC	3 cut(s)	20, 1027, 1054
HpyCH4III	ACNGT	3 cut(s)	502, 972, 1057
HpyCH4IV	ACGT	3 cut(s)	42, 120, 808
HpyCH4V	TGCA	4 cut(s)	743, 762, 780, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 537, 548, 786, 959
HpyF3I	CTNAG	3 cut(s)	13, 629, 766
HpySE526I	ACGT	3 cut(s)	42, 120, 808
Hsp92I	GRCGYC	1 cut(s)	42
HspAI	GCGC	1 cut(s)	540
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	520
Kzo9I	GATC	2 cut(s)	9, 614
LmnI	GCTCC	5 cut(s)	104, 134, 292, 646, 1076
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	255, 548
MaeII	ACGT	3 cut(s)	42, 120, 808
MaeIII	GTNAC	4 cut(s)	35, 223, 502, 839
MalI	GATC	2 cut(s)	11, 616
MboI	GATC	2 cut(s)	9, 614
MboII	GAAGA	5 cut(s)	85, 584, 720, 743, 1025
MflI	RGATCY	2 cut(s)	9, 614
MhlI	GDGCHC	2 cut(s)	764, 891
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	4 cut(s)	576, 623, 645, 1020
MluNI	TGGCCA	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	192, 592
Mox20I	TGGCCA	1 cut(s)	149
MroNI	GCCGGC	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	4 cut(s)	203, 429, 456, 519
MslI	CAYNNNNRTG	2 cut(s)	335, 1055
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	2 cut(s)	7, 174
MspR9I	CCNGG	1 cut(s)	830
Mva1269I	GAATGC	1 cut(s)	743
MvaI	CCWGG	1 cut(s)	830
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	5 cut(s)	179, 537, 548, 786, 959
NaeI	GCCGGC	1 cut(s)	175
NdeI	CATATG	1 cut(s)	536
NdeII	GATC	2 cut(s)	9, 614
NgoMIV	GCCGGC	1 cut(s)	173
NheI	GCTAGC	1 cut(s)	254
NlaIV	GGNNCC	3 cut(s)	212, 616, 736
NmeAIII	GCCGAG	1 cut(s)	651
NmuCI	GTSAC	3 cut(s)	35, 502, 839
NruI	TCGCGA	1 cut(s)	194
NspI	RCATGY	1 cut(s)	281
OliI	CACNNNNGTG	1 cut(s)	1055
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	1 cut(s)	743
PdiI	GCCGGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	4 cut(s)	397, 424, 881, 916
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	88, 159
Psp124BI	GAGCTC	1 cut(s)	891
Psp6I	CCWGG	1 cut(s)	828
PspGI	CCWGG	1 cut(s)	828
PspN4I	GGNNCC	3 cut(s)	212, 616, 736
PspPI	GGNCC	2 cut(s)	111, 674
PsuI	RGATCY	2 cut(s)	9, 614
PsyI	GACNNNGTC	1 cut(s)	41
RruI	TCGCGA	1 cut(s)	194
RsaI	GTAC	4 cut(s)	5, 499, 703, 794
RsaNI	GTAC	4 cut(s)	4, 498, 702, 793
RseI	CAYNNNNRTG	2 cut(s)	335, 1055
SacI	GAGCTC	1 cut(s)	891
SaqAI	TTAA	4 cut(s)	203, 429, 456, 519
SatI	GCNGC	2 cut(s)	87, 158
Sau3AI	GATC	2 cut(s)	9, 614
Sau96I	GGNCC	2 cut(s)	111, 674
ScrFI	CCNGG	1 cut(s)	830
SduI	GDGCHC	2 cut(s)	764, 891
SmiMI	CAYNNNNRTG	2 cut(s)	335, 1055
Sse9I	AATT	4 cut(s)	576, 623, 645, 1020
SsiI	CCGC	5 cut(s)	54, 86, 228, 258, 333
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	2 cut(s)	255, 548
SstI	GAGCTC	1 cut(s)	891
StyD4I	CCNGG	1 cut(s)	828
StyI	CCWWGG	2 cut(s)	447, 694
TaaI	ACNGT	3 cut(s)	502, 972, 1057
TaiI	ACGT	3 cut(s)	45, 123, 811
TaqI	TCGA	1 cut(s)	957
TasI	AATT	4 cut(s)	576, 623, 645, 1020
TatI	WGTACW	1 cut(s)	497
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	4 cut(s)	397, 424, 881, 916
Tru1I	TTAA	4 cut(s)	203, 429, 456, 519
Tru9I	TTAA	4 cut(s)	203, 429, 456, 519
TseFI	GTSAC	3 cut(s)	35, 502, 839
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	3 cut(s)	35, 502, 839
TspDTI	ATGAA	8 cut(s)	131, 353, 523, 670, 697, 736, 813, 860
TspGWI	ACGGA	1 cut(s)	121
Tth111I	GACNNNGTC	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	760
XapI	RAATTY	1 cut(s)	576
XceI	RCATGY	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	2 cut(s)	255, 548
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.