Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

7375869 .. 7378227

Gene Structure 2359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGAAAGCAGAGAACGAGAAGAAGCCATCGGCTGTATCTGACGTCGGAGCATGGGCTATGAACGTAACGAGCTCCGTTGGGATCATCATGGCTAATAAACAACTAATGTCATCATCTGGATTCGGCTTCAGCTTCGCGACAACTCTCACGGGATTTCACTTTGCTCTTACTGCTCTCGTTGGTATGGTGTCGAATGCGACTGGTTTATCAGCATCTAAGCATGTTCCTCTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTAGTCTTATGTTGAACTCTGTTGGCTTCTACCAGATATCGAAATTGAGCATGATTCCAGTTGTTTGTGTGATGGAATGGGTTCTACATAGTAAGCATTACTCGAGAGAAGTGAAGGCATCTGTCATGGTTGTTGTTGTAGGAGTTGGGATTTGTACTGTTACTGATGTCAAAGTTAATGCCAAAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATCTCAATAGGTTCACTGCAGAAGAAATACTCGATCGGATCATTCGAGTTGCTGAGTAAGACAGCTCCAATCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACTATTTCTTGAGTGGCAGATTCATTTCGACTTACAAGATGACTTATAGCGCAATGTTATGCATTCTTCTCTCCTGCGCATTGGCGGTTTTCTGCAACATAAGCCAATATCTCTGCATCGGAAGATTCTCTGCTACCTCATTCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACATTAGGATGGCTTATCTTTGATTCGGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAGCCGTGGTGGGAATGGTGATATACAGTTGGGCAGTCGAGTTAGAGAAACAGAGAAAGTCGAAAGTGATACCGCATGGTAAACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAGAAGGTATAGAACATATGGATTTGAAAGACATGGAGCTTGGAAATAATAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009605 GO:0009607 GO:0009624 GO:0009791 GO:0009832 GO:0009833 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015783 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0022402 GO:0022414 GO:0022804 GO:0022857 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0036080 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0061640 GO:0071554 GO:0071669 GO:0071702 GO:0071705 GO:0071840 GO:0072334 GO:0090480 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

348

Amino Acids

38.04

Weight (kDa)

8.76

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	26 - 300	1.8e-18	Triose-phosphate Transporter family
EamA	PF00892	158 - 300	1.6e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	48
Acc16I	TGCGCA	1 cut(s)	709
AccII	CGCG	1 cut(s)	140
AciI	CCGC	2 cut(s)	716, 944
AclWI	GGATC	2 cut(s)	92, 568
AcoI	YGGCCR	1 cut(s)	784
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	445
AgsI	TTSAA	3 cut(s)	304, 850, 1015
AluBI	AGCT	5 cut(s)	75, 135, 241, 587, 1027
AluI	AGCT	5 cut(s)	75, 135, 241, 587, 1027
Alw21I	GWGCWC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	92, 568
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	1 cut(s)	784
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	2 cut(s)	683, 710
AspS9I	GGNCC	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	901
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	620
BalI	TGGCCA	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	4 cut(s)	37, 355, 813, 859
BceAI	ACGGC	2 cut(s)	482, 860
BfmI	CTRYAG	1 cut(s)	539
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	620
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	620
BmsI	GCATC	3 cut(s)	224, 416, 756
BpmI	CTGGAG	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	661
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	876
Bse1I	ACTGG	2 cut(s)	208, 347
Bse3DI	GCAATG	1 cut(s)	690
BseDI	CCNNGG	1 cut(s)	876
BseGI	GGATG	2 cut(s)	824, 870
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	2 cut(s)	208, 347
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	1 cut(s)	265
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	786
BsiEI	CGRYCG	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	391
BsmI	GAATGC	2 cut(s)	202, 693
BsnI	GGCC	1 cut(s)	786
BsoBI	CYCGRG	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	4 cut(s)	84, 522, 555, 560
Bsp68I	TCGCGA	1 cut(s)	140
BspACI	CCGC	2 cut(s)	716, 944
BspANI	GGCC	1 cut(s)	786
BspCNI	CTCAG	1 cut(s)	567
BspFNI	CGCG	1 cut(s)	140
BspMAI	CTGCAG	1 cut(s)	543
BspPI	GGATC	2 cut(s)	92, 568
BsrDI	GCAATG	1 cut(s)	690
BsrI	ACTGG	2 cut(s)	208, 347
BssECI	CCNNGG	1 cut(s)	876
BssMI	GATC	4 cut(s)	84, 522, 555, 560
BssNI	GRCGYC	1 cut(s)	45
Bst4CI	ACNGT	4 cut(s)	448, 799, 899, 959
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	3 cut(s)	219, 575, 871
BstDSI	CCRYGG	1 cut(s)	876
BstF5I	GGATG	2 cut(s)	824, 870
BstFNI	CGCG	1 cut(s)	140
BstHHI	GCGC	2 cut(s)	683, 710
BstKTI	GATC	4 cut(s)	87, 525, 558, 563
BstMBI	GATC	4 cut(s)	84, 522, 555, 560
BstMCI	CGRYCG	1 cut(s)	558
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 494, 732
BstNSI	RCATGY	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	539
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	522
BstXI	CCANNNNNNTGG	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	786
BtgI	CCRYGG	1 cut(s)	876
BtsCI	GGATG	2 cut(s)	824, 870
BtsI	GCAGTG	2 cut(s)	492, 536
BtsIMutI	CAGTG	2 cut(s)	492, 536
BtuMI	TCGCGA	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	490
CfoI	GCGC	2 cut(s)	683, 710
Cfr13I	GGNCC	1 cut(s)	620
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	8 cut(s)	54, 91, 224, 340, 415, 790, 947, 1021
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	3 cut(s)	219, 575, 871
DpnI	GATC	4 cut(s)	86, 524, 557, 562
DpnII	GATC	4 cut(s)	84, 522, 555, 560
EaeI	YGGCCR	1 cut(s)	784
Ecl136II	GAGCTC	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	620
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	391
EcoICRI	GAGCTC	1 cut(s)	75
EcoRV	GATATC	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	695
EcoT38I	GRGCYC	1 cut(s)	77
FaeI	CATG	8 cut(s)	57, 94, 227, 343, 418, 793, 950, 1024
FatI	CATG	8 cut(s)	53, 90, 223, 339, 414, 789, 946, 1020
FauNDI	CATATG	1 cut(s)	1005
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	2 cut(s)	831, 877
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	279
FspI	TGCGCA	1 cut(s)	709
GlaI	GCGC	2 cut(s)	682, 709
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	786
HhaI	GCGC	2 cut(s)	683, 710
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	8 cut(s)	57, 94, 227, 343, 418, 793, 950, 1024
Hin6I	GCGC	2 cut(s)	681, 708
HinP1I	GCGC	2 cut(s)	681, 708
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	5 cut(s)	123, 343, 651, 756, 833
HphI	GGTGA	1 cut(s)	901
Hpy166II	GTNNAC	3 cut(s)	536, 631, 953
Hpy188I	TCNGA	5 cut(s)	43, 50, 560, 752, 838
Hpy188III	TCNNGA	5 cut(s)	120, 139, 393, 640, 850
Hpy8I	GTNNAC	3 cut(s)	536, 631, 953
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	397, 986
HpyCH4III	ACNGT	4 cut(s)	448, 799, 899, 959
HpyCH4IV	ACGT	2 cut(s)	45, 66
HpyCH4V	TGCA	5 cut(s)	492, 541, 693, 726, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 494, 732
HpyF3I	CTNAG	3 cut(s)	219, 575, 871
HpySE526I	ACGT	2 cut(s)	45, 66
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	8 cut(s)	57, 94, 227, 343, 418, 793, 950, 1024
HspAI	GCGC	2 cut(s)	681, 708
Kzo9I	GATC	4 cut(s)	84, 522, 555, 560
LmnI	GCTCC	5 cut(s)	50, 80, 238, 592, 1024
LpnPI	CCDG	7 cut(s)	105, 189, 335, 360, 530, 718, 846
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	3 cut(s)	224, 416, 756
MaeII	ACGT	2 cut(s)	45, 66
MaeIII	GTNAC	2 cut(s)	67, 448
MalI	GATC	4 cut(s)	86, 524, 557, 562
MboI	GATC	4 cut(s)	84, 522, 555, 560
MboII	GAAGA	5 cut(s)	34, 556, 689, 765, 980
MflI	RGATCY	1 cut(s)	522
MhlI	GDGCHC	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	786
MluCI	AATT	2 cut(s)	286, 332
MluNI	TGGCCA	1 cut(s)	786
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	3 cut(s)	240, 620, 778
Mox20I	TGGCCA	1 cut(s)	786
Mph1103I	ATGCAT	1 cut(s)	695
MroXI	GAANNNNTTC	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	786
MseI	TTAA	3 cut(s)	465, 809, 978
MslI	CAYNNNNRTG	1 cut(s)	817
Msp20I	TGGCCA	1 cut(s)	786
Mva1269I	GAATGC	2 cut(s)	202, 693
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	173, 494, 732
NdeI	CATATG	1 cut(s)	1005
NdeII	GATC	4 cut(s)	84, 522, 555, 560
NlaIII	CATG	8 cut(s)	57, 94, 227, 343, 418, 793, 950, 1024
NruI	TCGCGA	1 cut(s)	140
NsbI	TGCGCA	1 cut(s)	709
NsiI	ATGCAT	1 cut(s)	695
NspI	RCATGY	1 cut(s)	227
PaeR7I	CTCGAG	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PctI	GAATGC	2 cut(s)	202, 693
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	5 cut(s)	123, 343, 651, 756, 833
PkrI	GCNGC	1 cut(s)	280
Ple19I	CGATCG	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	620
PstI	CTGCAG	1 cut(s)	543
PsuI	RGATCY	1 cut(s)	522
PvuI	CGATCG	1 cut(s)	558
RruI	TCGCGA	1 cut(s)	140
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
RseI	CAYNNNNRTG	1 cut(s)	817
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	465, 809, 978
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	84, 522, 555, 560
Sau96I	GGNCC	1 cut(s)	620
SduI	GDGCHC	1 cut(s)	77
SfaNI	GCATC	3 cut(s)	224, 416, 756
SfcI	CTRYAG	1 cut(s)	539
Sfr274I	CTCGAG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	620
SlaI	CTCGAG	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	817
SmlI	CTYRAG	2 cut(s)	391, 640
SmoI	CTYRAG	2 cut(s)	391, 640
Sse9I	AATT	2 cut(s)	286, 332
SsiI	CCGC	2 cut(s)	716, 944
SstI	GAGCTC	1 cut(s)	77
TaaI	ACNGT	4 cut(s)	448, 799, 899, 959
TaiI	ACGT	2 cut(s)	48, 69
TaqI	TCGA	8 cut(s)	194, 329, 392, 554, 567, 659, 909, 932
TasI	AATT	2 cut(s)	286, 332
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	5 cut(s)	123, 343, 651, 756, 833
Tru1I	TTAA	3 cut(s)	465, 809, 978
Tru9I	TTAA	3 cut(s)	465, 809, 978
TscAI	CASTG	2 cut(s)	499, 543
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	5 cut(s)	77, 299, 469, 643, 806
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	499, 543
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	227
XhoI	CTCGAG	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	369
ZraI	GACGTC	1 cut(s)	46
Zsp2I	ATGCAT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.