Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Forward (+)

13972564 .. 13973135

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0171800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTATCATGGTGCAGGCCTATGGAAAATCTCTTCAAACTAAATGTGGATGGTTCTAAATCTAGTGCTGGTAGTATTGGCTCAGGAGGTCTCATTAGGGACTCTTCTGGGAATTGGATCAGTGGTTTTATGTGCAACATTGGCTTTGGAGAAGTGCTGCAGGCAGAGGCTTGGGGCTTATTTTATGGTCTGAAACTTGCACTTGATGCTTCTATTACTCATCTTGAAGTGGAATCTGCTTATGTGCTTGTACAACTCGTCAAACATGATGACATTGCTCTTCACCCCTTGGGAACTCTACTGAGAAATTGTCAACAATTGTTGCAGCTCTTCTCTTATGTCCAGGTCAATCACGTTCATAGAGAGAGGAATATGGCAGCTGATGCTATGACCAAAGCTAGTGTCTCAAACTCACCTGGGATTTGCATCCTTCAAAGTCCCCCAGCCTTTGTGCTTAATATTCTCCTTGATGACATTGCTGGTGTTGCTCGCTCTAGAGTGACCACTAGCACTATGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

173

Amino Acids

18.77

Weight (kDa)

6.17

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	15 - 132	2.8e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	125
AdeI	CACNNNGTG	1 cut(s)	516
AfaI	GTAC	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	37, 227, 434
AjnI	CCWGG	2 cut(s)	342, 415
AluBI	AGCT	3 cut(s)	328, 380, 398
AluI	AGCT	3 cut(s)	328, 380, 398
Alw26I	GTCTC	2 cut(s)	95, 409
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	3 cut(s)	157, 325, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
AsuHPI	GGTGA	2 cut(s)	275, 405
BbvI	GCAGC	3 cut(s)	144, 337, 389
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	344, 417
BcoDI	GTCTC	2 cut(s)	95, 409
BfaI	CTAG	5 cut(s)	63, 399, 495, 507, 520
BfmI	CTRYAG	1 cut(s)	158
BisI	GCNGC	3 cut(s)	158, 326, 378
BlsI	GCNGC	3 cut(s)	159, 327, 379
Bme1390I	CCNGG	2 cut(s)	344, 417
BmrFI	CCNGG	2 cut(s)	344, 417
BmsI	GCATC	3 cut(s)	196, 373, 435
Bpu10I	CCTNAGC	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	288, 416
Bse3DI	GCAATG	2 cut(s)	273, 474
Bse8I	GATNNNNATC	1 cut(s)	425
BseBI	CCWGG	2 cut(s)	344, 417
BseDI	CCNNGG	2 cut(s)	288, 416
BseGI	GGATG	2 cut(s)	55, 426
BseJI	GATNNNNATC	1 cut(s)	425
BseMI	GCAATG	2 cut(s)	273, 474
BseMII	CTCAG	2 cut(s)	96, 293
BseXI	GCAGC	3 cut(s)	144, 337, 389
BseYI	CCCAGC	1 cut(s)	442
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	19
BslFI	GGGAC	2 cut(s)	113, 423
BsmAI	GTCTC	2 cut(s)	95, 409
BsmFI	GGGAC	2 cut(s)	113, 423
BsnI	GGCC	1 cut(s)	19
Bso31I	GGTCTC	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	2 cut(s)	95, 294
BspMAI	CTGCAG	1 cut(s)	162
BspPI	GGATC	1 cut(s)	125
BspQI	GCTCTTC	2 cut(s)	285, 335
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	273, 474
BsrGI	TGTACA	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	288, 416
BssMI	GATC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	344, 417
Bst6I	CTCTTC	4 cut(s)	38, 109, 285, 335
BstAPI	GCANNNNNTGC	3 cut(s)	206, 383, 516
BstAUI	TGTACA	1 cut(s)	250
BstC8I	GCNNGC	3 cut(s)	17, 162, 490
BstDEI	CTNAG	2 cut(s)	82, 302
BstF5I	GGATG	2 cut(s)	55, 426
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	2 cut(s)	95, 409
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 206, 383, 485, 516
BstNI	CCWGG	2 cut(s)	344, 417
BstSCI	CCNGG	2 cut(s)	342, 415
BstSFI	CTRYAG	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	144, 337, 389
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	55, 426
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	3 cut(s)	17, 162, 490
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	2 cut(s)	9, 266
CviJI	RGCY	9 cut(s)	19, 81, 144, 170, 177, 328, 380, 398, 446
CviKI_1	RGCY	9 cut(s)	19, 81, 144, 170, 177, 328, 380, 398, 446
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	82, 302
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DraIII	CACNNNGTG	1 cut(s)	516
Eam1104I	CTCTTC	4 cut(s)	38, 109, 285, 335
EarI	CTCTTC	4 cut(s)	38, 109, 285, 335
Eco130I	CCWWGG	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	342, 415
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	2 cut(s)	12, 269
FaqI	GGGAC	2 cut(s)	113, 423
FatI	CATG	2 cut(s)	8, 265
Fnu4HI	GCNGC	3 cut(s)	158, 326, 378
FokI	GGATG	2 cut(s)	62, 413
Fsp4HI	GCNGC	3 cut(s)	158, 326, 378
FspBI	CTAG	5 cut(s)	63, 399, 495, 507, 520
GluI	GCNGC	3 cut(s)	158, 326, 378
GsaI	CCCAGC	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	12, 269
HincII	GTYRAC	1 cut(s)	314
HindII	GTYRAC	1 cut(s)	314
HinfI	GANTC	2 cut(s)	101, 233
HphI	GGTGA	2 cut(s)	275, 405
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	3 cut(s)	84, 224, 495
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	440
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	6 cut(s)	15, 135, 160, 200, 325, 426
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 206, 383, 485, 516
HpyF3I	CTNAG	2 cut(s)	82, 302
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	2 cut(s)	12, 269
Kzo9I	GATC	1 cut(s)	117
LguI	GCTCTTC	2 cut(s)	285, 335
Lsp1109I	GCAGC	3 cut(s)	144, 337, 389
LweI	GCATC	3 cut(s)	196, 373, 435
MaeI	CTAG	5 cut(s)	63, 399, 495, 507, 520
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	4 cut(s)	25, 96, 272, 322
MfeI	CAATTG	1 cut(s)	317
MluCI	AATT	3 cut(s)	112, 307, 317
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	3 cut(s)	80, 160, 360
MseI	TTAA	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	344, 417
MunI	CAATTG	1 cut(s)	317
MvaI	CCWGG	2 cut(s)	344, 417
MwoI	GCNNNNNNNGC	5 cut(s)	141, 206, 383, 485, 516
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	2 cut(s)	12, 269
NmuCI	GTSAC	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	19
PciSI	GCTCTTC	2 cut(s)	285, 335
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	159, 327, 379
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp6I	CCWGG	2 cut(s)	342, 415
PspFI	CCCAGC	1 cut(s)	442
PspGI	CCWGG	2 cut(s)	342, 415
PstI	CTGCAG	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SapI	GCTCTTC	2 cut(s)	285, 335
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	3 cut(s)	158, 326, 378
Sau3AI	GATC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	344, 417
SetI	ASST	7 cut(s)	91, 330, 348, 357, 382, 400, 418
SfaNI	GCATC	3 cut(s)	196, 373, 435
SfcI	CTRYAG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	112, 307, 317
SseBI	AGGCCT	1 cut(s)	19
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	5 cut(s)	63, 399, 495, 507, 520
StuI	AGGCCT	1 cut(s)	19
StyD4I	CCNGG	2 cut(s)	342, 415
StyI	CCWWGG	1 cut(s)	288
TaiI	ACGT	1 cut(s)	357
TasI	AATT	3 cut(s)	112, 307, 317
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	3 cut(s)	157, 325, 377
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	127
XbaI	TCTAGA	1 cut(s)	494
XspI	CTAG	5 cut(s)	63, 399, 495, 507, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.