Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

23211047 .. 23213466

Gene Structure 2420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1145600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGAAGGAAAAGAAGTCTCCTGTGTCCGATGTGGGAGCTTGGGGAATGAATATTGTGAGCTCTGTGGGCATTATCATGGCCAACAAGCAGCTCATGTCCCCTAACGGCTTTGCTTTCGGCTTCGCTACAACTTTGACCGGATTCCATTTCTCTGTTACCGCTTTGGTCGGTCTGGTGTCAAATGCCACTGGTTACTCTGCATCTAAGCATGTTCCTCTGTGGGAACTTGTTTGGTTCTCACTTGTTGCCAATGCTTCAATCACCGGGATGAACTTGAGCCTCATGCTTAACTCTGTCGGATTTTATCAGATATCGAAGTTGAGCATGATTCCAGTGGTTTGTGTGATGGAATGGATTCTTCATGCAAAGCATTTTTCACGGGAAGTCAAGATTGCGGTGGCAGTAGTGGTTGTAGGCGTGGGTATATGTACTGTGACCGACGTGAAAGTCAATGCTAAAGGCTTTCTGTGTGCTTGTGTGGCTATCCTATGTACATCCCTACAACAAATTTCAATAGGTTCCTTGCAAAAGAAATACTCGATAGGCTCTTTTGAATTGCTCAGCAAGACAGCTCCCATTCAAGCTCTGTCCCTTCTTGTCCTTGGTCCATTCATCGATTACTTTCTTACTGGAAAACTTCTCTCTGATTACAAGTTGTCTACTGGTGCATTTTTTTTCATCCTACTCTCATGCTCCCTAGCAGTGTTTTGCAACATCAGCCAGTACCTCTGCATCGGCCGCTTCTCAGCTGTCTCTTTCCAGGTTTTGGGCCACATGAAAACAGTATGTGTCCTGACATTGGGATGGTTACTCTTTGATTCCCAGCTCACATTCAAAAACTTGCTCGGCATGGCTCTTGCTGTTCTTGGCATGATCGTATACAGCTGGGCTGTGGAGGCTGAGAAGCAACCCAAGGTCCTTCCCAGTCATCTGTCAGAAGAGGATCTGAAACCTCTAAAGGAGGGAGTAGCCGAGAGTCCATTGAAAGATGTGGCGATTGGTGAGTCCAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

340

Amino Acids

36.6

Weight (kDa)

8.65

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	22 - 296	1.2e-19	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccI	GTMKAC	2 cut(s)	662, 882
AciI	CCGC	3 cut(s)	162, 398, 742
AclWI	GGATC	1 cut(s)	954
AcoI	YGGCCR	2 cut(s)	81, 739
AcsI	RAATTY	1 cut(s)	510
AfaI	GTAC	3 cut(s)	433, 496, 728
AfiI	CCNNNNNNNGG	2 cut(s)	769, 802
AgsI	TTSAA	6 cut(s)	261, 516, 557, 584, 838, 988
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	8 cut(s)	41, 63, 94, 575, 587, 752, 829, 888
AluI	AGCT	8 cut(s)	41, 63, 94, 575, 587, 752, 829, 888
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	24, 760
AlwI	GGATC	1 cut(s)	954
AoxI	GGCC	3 cut(s)	81, 739, 772
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	510
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	3 cut(s)	608, 772, 919
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	256, 1016
AvaII	GGWCC	2 cut(s)	608, 919
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	343, 801
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	764
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	24, 760
BfaI	CTAG	1 cut(s)	701
BisI	GCNGC	2 cut(s)	92, 742
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	2 cut(s)	93, 743
Bme1390I	CCNGG	2 cut(s)	268, 764
Bme18I	GGWCC	2 cut(s)	608, 919
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	3 cut(s)	608, 772, 919
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	2 cut(s)	268, 764
BmrI	ACTGGG	1 cut(s)	921
BmsI	GCATC	2 cut(s)	212, 744
BmuI	ACTGGG	1 cut(s)	921
Bpu1102I	GCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	268
Bsa29I	ATCGAT	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	604, 915
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	769, 802
Bse1I	ACTGG	6 cut(s)	196, 335, 637, 670, 724, 927
BseBI	CCWGG	1 cut(s)	764
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	2 cut(s)	604, 915
BseGI	GGATG	4 cut(s)	276, 497, 681, 812
BseLI	CCNNNNNNNGG	2 cut(s)	769, 802
BseMII	CTCAG	3 cut(s)	577, 762, 894
BseNI	ACTGG	6 cut(s)	196, 335, 637, 670, 724, 927
BseX3I	CGGCCG	1 cut(s)	739
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	2 cut(s)	825, 888
Bsh1285I	CGRYCG	1 cut(s)	742
BshFI	GGCC	3 cut(s)	83, 741, 774
BshVI	ATCGAT	1 cut(s)	618
BsiEI	CGRYCG	1 cut(s)	742
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	141, 267
BslFI	GGGAC	2 cut(s)	85, 577
BslI	CCNNNNNNNGG	2 cut(s)	769, 802
BsmAI	GTCTC	2 cut(s)	24, 760
BsmFI	GGGAC	2 cut(s)	85, 577
BsnI	GGCC	3 cut(s)	83, 741, 774
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	876, 946
Bsp1720I	GCTNAGC	1 cut(s)	563
BspACI	CCGC	3 cut(s)	162, 398, 742
BspANI	GGCC	3 cut(s)	83, 741, 774
BspCNI	CTCAG	3 cut(s)	576, 761, 895
BspDI	ATCGAT	1 cut(s)	618
BspLI	GGNNCC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	954
BsrGI	TGTACA	1 cut(s)	494
BsrI	ACTGG	6 cut(s)	196, 335, 637, 670, 724, 927
BssECI	CCNNGG	2 cut(s)	604, 915
BssMI	GATC	2 cut(s)	876, 946
BssNAI	GTATAC	1 cut(s)	883
BssT1I	CCWWGG	2 cut(s)	604, 915
Bst1107I	GTATAC	1 cut(s)	883
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	2 cut(s)	436, 787
Bst6I	CTCTTC	1 cut(s)	936
BstAUI	TGTACA	1 cut(s)	494
BstDEI	CTNAG	4 cut(s)	207, 563, 748, 903
BstF5I	GGATG	4 cut(s)	276, 497, 681, 812
BstKTI	GATC	2 cut(s)	879, 949
BstMAI	GTCTC	2 cut(s)	24, 760
BstMBI	GATC	2 cut(s)	876, 946
BstMCI	CGRYCG	1 cut(s)	742
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 482, 720, 741, 899
BstNI	CCWGG	1 cut(s)	764
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	266, 762
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	946
BstYI	RGATCY	1 cut(s)	946
BstZ17I	GTATAC	1 cut(s)	883
BstZI	CGGCCG	1 cut(s)	739
Bsu15I	ATCGAT	1 cut(s)	618
BsuRI	GGCC	3 cut(s)	83, 741, 774
BsuTUI	ATCGAT	1 cut(s)	618
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	4 cut(s)	276, 497, 681, 812
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	3 cut(s)	189, 342, 711
Cfr13I	GGNCC	3 cut(s)	608, 772, 919
ClaI	ATCGAT	1 cut(s)	618
Csp6I	GTAC	3 cut(s)	432, 495, 727
CviQI	GTAC	3 cut(s)	432, 495, 727
DdeI	CTNAG	4 cut(s)	207, 563, 748, 903
DpnI	GATC	2 cut(s)	878, 948
DpnII	GATC	2 cut(s)	876, 946
DrdI	GACNNNNNNGTC	1 cut(s)	449
DseDI	GACNNNNNNGTC	1 cut(s)	449
EaeI	YGGCCR	2 cut(s)	81, 739
EagI	CGGCCG	1 cut(s)	739
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
Ecl136II	GAGCTC	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	739
Eco130I	CCWWGG	2 cut(s)	604, 915
Eco24I	GRGCYC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	608, 919
Eco52I	CGGCCG	1 cut(s)	739
Eco53kI	GAGCTC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	919
EcoRII	CCWGG	1 cut(s)	762
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	604, 915
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	2 cut(s)	604, 915
FaqI	GGGAC	2 cut(s)	85, 577
FblI	GTMKAC	2 cut(s)	662, 882
Fnu4HI	GCNGC	2 cut(s)	92, 742
FokI	GGATG	4 cut(s)	283, 484, 668, 819
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	2 cut(s)	92, 742
FspBI	CTAG	1 cut(s)	701
GluI	GCNGC	2 cut(s)	92, 742
GsaI	CCCAGC	2 cut(s)	829, 892
HaeIII	GGCC	3 cut(s)	83, 741, 774
HapII	CCGG	2 cut(s)	141, 267
HinfI	GANTC	6 cut(s)	144, 331, 358, 821, 979, 1007
HpaII	CCGG	2 cut(s)	141, 267
HphI	GGTGA	2 cut(s)	256, 1016
Hpy166II	GTNNAC	2 cut(s)	663, 883
Hpy188I	TCNGA	6 cut(s)	31, 302, 312, 649, 940, 951
Hpy188III	TCNNGA	2 cut(s)	391, 796
Hpy8I	GTNNAC	2 cut(s)	663, 883
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	2 cut(s)	605, 932
HpyCH4III	ACNGT	2 cut(s)	436, 787
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	6 cut(s)	203, 368, 529, 671, 714, 735
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 482, 720, 741, 899
HpyF3I	CTNAG	4 cut(s)	207, 563, 748, 903
HpySE526I	ACGT	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	876, 946
LmnI	GCTCC	3 cut(s)	38, 580, 701
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	212, 744
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	4 cut(s)	157, 194, 436, 810
MalI	GATC	2 cut(s)	878, 948
MboI	GATC	2 cut(s)	876, 946
MboII	GAAGA	2 cut(s)	353, 953
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	510, 557
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	988, 1016
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	7 cut(s)	228, 293, 740, 892, 937, 958, 966
Mox20I	TGGCCA	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	3 cut(s)	77, 269, 805
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	752, 888
MspI	CCGG	2 cut(s)	141, 267
MspR9I	CCNGG	2 cut(s)	268, 764
MvaI	CCWGG	1 cut(s)	764
MwoI	GCNNNNNNNGC	5 cut(s)	69, 482, 720, 741, 899
NciI	CCSGG	1 cut(s)	268
NdeII	GATC	2 cut(s)	876, 946
NlaIV	GGNNCC	1 cut(s)	523
NmeAIII	GCCGAG	2 cut(s)	828, 1000
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	4 cut(s)	144, 331, 358, 821
PflMI	CCANNNNNTGG	1 cut(s)	769
PkrI	GCNGC	2 cut(s)	93, 743
PleI	GAGTC	2 cut(s)	987, 1015
PpsI	GAGTC	2 cut(s)	987, 1015
PpuMI	RGGWCCY	1 cut(s)	919
Psp124BI	GAGCTC	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	919
Psp6I	CCWGG	1 cut(s)	762
PspFI	CCCAGC	2 cut(s)	825, 888
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	3 cut(s)	608, 772, 919
PspPPI	RGGWCCY	1 cut(s)	919
PsuI	RGATCY	1 cut(s)	946
PvuII	CAGCTG	2 cut(s)	752, 888
RsaI	GTAC	3 cut(s)	433, 496, 728
RsaNI	GTAC	3 cut(s)	432, 495, 727
RseI	CAYNNNNRTG	3 cut(s)	77, 269, 805
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	92, 742
Sau3AI	GATC	2 cut(s)	876, 946
Sau96I	GGNCC	3 cut(s)	608, 772, 919
SchI	GAGTC	2 cut(s)	988, 1016
ScrFI	CCNGG	2 cut(s)	268, 764
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	2 cut(s)	212, 744
SinI	GGWCC	2 cut(s)	608, 919
SmiMI	CAYNNNNRTG	3 cut(s)	77, 269, 805
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	2 cut(s)	510, 557
SsiI	CCGC	3 cut(s)	162, 398, 742
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	1 cut(s)	701
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	266, 762
StyI	CCWWGG	2 cut(s)	604, 915
TaaI	ACNGT	2 cut(s)	436, 787
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	3 cut(s)	317, 542, 618
TaqII	GACCGA	2 cut(s)	161, 455
TasI	AATT	2 cut(s)	510, 557
TatI	WGTACW	2 cut(s)	431, 494
TauI	GCSGC	1 cut(s)	744
TfiI	GAWTC	4 cut(s)	144, 331, 358, 821
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	3 cut(s)	196, 342, 711
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	6 cut(s)	65, 287, 353, 604, 670, 794
TspRI	CASTG	3 cut(s)	196, 342, 711
Van91I	CCANNNNNTGG	1 cut(s)	769
VpaK11BI	GGWCC	2 cut(s)	608, 919
XapI	RAATTY	1 cut(s)	510
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	662, 882
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.