Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

43007856 .. 43010324

Gene Structure 2469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG258100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAGAAGGAAAAGAAGTCTCCAGTTTCCGATGTGGGAGCGTGGGGTATGAATATTGTGAGCTCCGTGGGCATTATCATGGCCAACAAGCAGCTTATGTCCCCTGCTGGCTTTGCTTTTGGCTTTGCTACAACTTTGACTGGCTTCCACTTCTCTGTTACTGCATTGGTTGGTTTCATATCGAATGCATCTGGGTACTCAGCATCAAAACATGTTCCTCTCTGGGAACTTATTTGGTTCTCTCTTGTAGCCAATGCCTCAATCACCGGGATGAACTTGAGTCTCATGCTTAACTCTGTCGGGTTTTATCAGATATCGAAGTTGAGCATGATTCCGGTGGTCTGTGTGATGGAGTGGATTATCCATGGTAAAAACTTCTCAAGGGAAGTCAAGATCGCTGTGGCAGTGGTCGTAGTAGGTGTGGGCATATGTACCGTCACCGATGTTAAAGTTAATGCCAAAGGCTTTCTCTGTGCTTGTGTGGCCATCTTGTGTACATCATTACAACAAATTTCAATTGGTTCATTACAGAAGAAATACTCAGTAGGCTCATTTGAATTGCTCAGCAAGACAGCTCCAATTCAAGCTATCTCCCTTCTCATTCTTGGTCCATTCGTTGATTACTTTCTTACTGGAAAACTTCTAACAGATTACAAAATGACTTCTGGTGCATTTGTAAGTGCTTGTATTGCCAGCCCATTTGATCTAAATCTGCTTCCTGAGTTTATGAGGAAACTAAACATTATGATGAAACTAATATGGAACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

256

Amino Acids

27.72

Weight (kDa)

9.12

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	22 - 209	2.9e-12	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	81, 483
AcsI	RAATTY	1 cut(s)	510
AfaI	GTAC	3 cut(s)	197, 433, 496
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	516, 557, 584
AluBI	AGCT	4 cut(s)	63, 94, 575, 587
AluI	AGCT	4 cut(s)	63, 94, 575, 587
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	24, 287
AoxI	GGCC	2 cut(s)	81, 483
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	608
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	256, 430
AvaII	GGWCC	1 cut(s)	608
BalI	TGGCCA	2 cut(s)	83, 485
BanII	GRGCYC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	343, 494
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	24, 287
BisI	GCNGC	1 cut(s)	92
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	608
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	2 cut(s)	197, 212
BpmI	CTGGAG	1 cut(s)	6
Bpu1102I	GCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	2 cut(s)	298, 364
BpuMI	CCSGG	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	708
BsaJI	CCNNGG	2 cut(s)	66, 364
BsaWI	WCCGGW	1 cut(s)	334
Bse1I	ACTGG	3 cut(s)	23, 145, 637
Bse8I	GATNNNNATC	1 cut(s)	708
BseDI	CCNNGG	2 cut(s)	66, 364
BseGI	GGATG	1 cut(s)	276
BseJI	GATNNNNATC	1 cut(s)	708
BseMII	CTCAG	4 cut(s)	213, 555, 577, 711
BseNI	ACTGG	3 cut(s)	23, 145, 637
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	2 cut(s)	83, 485
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	267, 335
BslFI	GGGAC	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	24, 287
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	83, 485
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	393, 703
Bsp1720I	GCTNAGC	1 cut(s)	563
Bsp19I	CCATGG	1 cut(s)	364
BspANI	GGCC	2 cut(s)	83, 485
BspCNI	CTCAG	4 cut(s)	212, 554, 576, 712
BsrGI	TGTACA	1 cut(s)	494
BsrI	ACTGG	3 cut(s)	23, 145, 637
BssECI	CCNNGG	2 cut(s)	66, 364
BssMI	GATC	2 cut(s)	393, 703
BssT1I	CCWWGG	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	436
BstAUI	TGTACA	1 cut(s)	494
BstC8I	GCNNGC	2 cut(s)	109, 694
BstDEI	CTNAG	4 cut(s)	199, 541, 563, 720
BstDSI	CCRYGG	2 cut(s)	66, 364
BstF5I	GGATG	1 cut(s)	276
BstKTI	GATC	2 cut(s)	396, 706
BstMAI	GTCTC	2 cut(s)	24, 287
BstMBI	GATC	2 cut(s)	393, 703
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 113, 482, 689
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	83, 485
BtgI	CCRYGG	2 cut(s)	66, 364
BtsCI	GGATG	1 cut(s)	276
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	2 cut(s)	109, 694
Cfr13I	GGNCC	1 cut(s)	608
Csp6I	GTAC	3 cut(s)	196, 432, 495
CviAII	CATG	5 cut(s)	79, 212, 286, 328, 365
CviQI	GTAC	3 cut(s)	196, 432, 495
DdeI	CTNAG	4 cut(s)	199, 541, 563, 720
DpnI	GATC	2 cut(s)	395, 705
DpnII	GATC	2 cut(s)	393, 703
EaeI	YGGCCR	2 cut(s)	81, 483
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	608
Eco53kI	GAGCTC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	63
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	5 cut(s)	82, 215, 289, 331, 368
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	5 cut(s)	78, 211, 285, 327, 364
FauNDI	CATATG	1 cut(s)	428
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	283
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	83, 485
HapII	CCGG	2 cut(s)	267, 335
Hin1II	CATG	5 cut(s)	82, 215, 289, 331, 368
HinfI	GANTC	2 cut(s)	280, 331
HpaII	CCGG	2 cut(s)	267, 335
HphI	GGTGA	2 cut(s)	256, 430
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	2 cut(s)	31, 312
Hpy188III	TCNNGA	2 cut(s)	391, 719
Hpy8I	GTNNAC	1 cut(s)	495
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	3 cut(s)	164, 188, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 113, 482, 689
HpyF3I	CTNAG	4 cut(s)	199, 541, 563, 720
Hsp92II	CATG	5 cut(s)	82, 215, 289, 331, 368
Kzo9I	GATC	2 cut(s)	393, 703
LmnI	GCTCC	3 cut(s)	38, 68, 580
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	197, 212
MaeIII	GTNAC	2 cut(s)	157, 436
MalI	GATC	2 cut(s)	395, 705
MboI	GATC	2 cut(s)	393, 703
MboII	GAAGA	1 cut(s)	544
MfeI	CAATTG	1 cut(s)	516
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	2 cut(s)	83, 485
MluCI	AATT	4 cut(s)	510, 516, 557, 579
MluNI	TGGCCA	2 cut(s)	83, 485
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	228, 268, 723
Mox20I	TGGCCA	2 cut(s)	83, 485
Mph1103I	ATGCAT	1 cut(s)	190
MscI	TGGCCA	2 cut(s)	83, 485
MseI	TTAA	3 cut(s)	291, 447, 453
MslI	CAYNNNNRTG	3 cut(s)	77, 269, 746
Msp20I	TGGCCA	2 cut(s)	83, 485
MspI	CCGG	2 cut(s)	267, 335
MspR9I	CCNGG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	190
MwoI	GCNNNNNNNGC	4 cut(s)	69, 113, 482, 689
NciI	CCSGG	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	364
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	2 cut(s)	393, 703
NlaIII	CATG	5 cut(s)	82, 215, 289, 331, 368
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PscI	ACATGT	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	608
RsaI	GTAC	3 cut(s)	197, 433, 496
RsaNI	GTAC	3 cut(s)	196, 432, 495
RseI	CAYNNNNRTG	3 cut(s)	77, 269, 746
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	291, 447, 453
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	393, 703
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	5 cut(s)	65, 96, 421, 577, 589
SfaNI	GCATC	2 cut(s)	197, 212
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	3 cut(s)	77, 269, 746
SmlI	CTYRAG	2 cut(s)	277, 379
SmoI	CTYRAG	2 cut(s)	277, 379
Sse9I	AATT	4 cut(s)	510, 516, 557, 579
SspI	AATATT	1 cut(s)	55
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	182, 317
TasI	AATT	4 cut(s)	510, 516, 557, 579
TatI	WGTACW	1 cut(s)	494
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	3 cut(s)	291, 447, 453
Tru9I	TTAA	3 cut(s)	291, 447, 453
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	5 cut(s)	65, 166, 287, 513, 764
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	1 cut(s)	510
XceI	RCATGY	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.