Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

38022786 .. 38024091

Gene Structure 1306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGATGAATAAGTGTGGTTTTCGTGTTTGGTGTTTTTTTTCAGCCACCACTTTAACTGGGTTCCATTTTTCTGTAACTGCACTCGTTGGCCTCGTCTCCAATGCTAGCAATTATTCTGCCTTCAAGCATGTTCCGTTTTGGGAGCTTCTTTGGTTCTCCATCGTTGCCAATGTCTCCATCACCGCCATGAACTTCAGCCTCATGCTCAACTCTGTCAGCTTTTACCAGATTTCGAAGTTGAGCATGATTCCCGTGGTTTGTGTGATGGAATGGATTCTTAACAACAAGCAGTATTCCAAGGAGGTTAAAATGTCTGTTGTGGTAGTGGTTATAGGTGTTGGTGTTTTTACCGTGACTGATGTAAAAGTTAACCTCAAAGGCTTCATATGCGCCTTCCTTGCAGTTTTGTCCACTTCTTTCCAGCAAATTTCTATTGGGTCTCTTCAAAAGAAACATTCAGTTGGATCCTTTGAATTGCCGAGTAAGACTGCTCCAATTCAAGCCACTTCTCTACTCATTCTCGGCCCATTCATTGATTACATCCTTAGTGGTACATTCATAACAGACTATAAGATGTCTTCTGGTGCCATTGCATTCATTCTTCTTTCGTGCACCTTAGCTGTGTTTTGCTATATTAGCCAGTACCTTTGTATTGGACGTTTCTCTGCTGTTTCATTCCAGGCTTTAGGTCACATGAAAACAGTATGTGTCCTCACATTAGGGTGGCTTCTCTTTGATTCAGAGCTCACTTTCAAGAACATTATGTGGATGATTCGTGCAGTCGTTGGCATGGTGATTTATAGTTGGGCTGTTGAGGCAGAAAAAGAGTCTGGCAAACCCGTGTCCCATTCAAAAACCAGCATGACAGGAGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

292

Amino Acids

32.22

Weight (kDa)

9.08

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	17 - 268	9.4e-15	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	584
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	2 cut(s)	459, 472
AcsI	RAATTY	1 cut(s)	426
AcuI	CTGAAG	1 cut(s)	178
AfaI	GTAC	2 cut(s)	553, 644
AgsI	TTSAA	6 cut(s)	124, 446, 473, 500, 754, 852
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	4 cut(s)	145, 219, 620, 745
AluI	AGCT	4 cut(s)	145, 219, 620, 745
Alw21I	GWGCWC	2 cut(s)	614, 747
Alw26I	GTCTC	3 cut(s)	100, 178, 444
Alw44I	GTGCAC	1 cut(s)	610
AlwI	GGATC	2 cut(s)	459, 472
AoxI	GGCC	2 cut(s)	88, 523
ApaLI	GTGCAC	1 cut(s)	610
ApoI	RAATTY	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	172, 805
AsuII	TTCGAA	1 cut(s)	233
AsuNHI	GCTAGC	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	614
BamHI	GGATCC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	747
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	2 cut(s)	614, 747
BccI	CCATC	3 cut(s)	167, 185, 259
BciT130I	CCWGG	1 cut(s)	680
BcoDI	GTCTC	3 cut(s)	100, 178, 444
BfaI	CTAG	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	3 cut(s)	62, 466, 586
BmrFI	CCNGG	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	66
BmtI	GCTAGC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	616
Bpu14I	TTCGAA	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	252, 297
Bse1I	ACTGG	2 cut(s)	61, 640
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	2 cut(s)	252, 297
BseGI	GGATG	2 cut(s)	540, 774
BseMI	GCAATG	1 cut(s)	588
BseNI	ACTGG	2 cut(s)	61, 640
BseSI	GKGCMC	1 cut(s)	614
BsgI	GTGCAG	2 cut(s)	63, 798
BshFI	GGCC	2 cut(s)	90, 525
BshNI	GGYRCC	1 cut(s)	584
BsiHKAI	GWGCWC	2 cut(s)	614, 747
BslFI	GGGAC	1 cut(s)	829
BsmAI	GTCTC	3 cut(s)	100, 178, 444
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	829
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	90, 525
Bso31I	GGTCTC	1 cut(s)	444
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	614, 747
Bsp143I	GATC	1 cut(s)	464
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	2 cut(s)	90, 525
BspLI	GGNNCC	3 cut(s)	62, 466, 586
BspOI	GCTAGC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	459, 472
BspT104I	TTCGAA	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	2 cut(s)	61, 640
BssECI	CCNNGG	2 cut(s)	252, 297
BssMI	GATC	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	2 cut(s)	352, 703
Bst6I	CTCTTC	1 cut(s)	447
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	545, 616
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	540, 774
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	1 cut(s)	467
BstMAI	GTCTC	3 cut(s)	100, 178, 444
BstMBI	GATC	1 cut(s)	464
BstMWI	GCNNNNNNNGC	4 cut(s)	387, 398, 636, 815
BstNI	CCWGG	1 cut(s)	680
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	678
BstSLI	GKGCMC	1 cut(s)	614
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	90, 525
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	540, 774
Cac8I	GCNNGC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	524
Csp6I	GTAC	2 cut(s)	552, 643
CviAII	CATG	7 cut(s)	128, 187, 202, 244, 694, 790, 862
CviQI	GTAC	2 cut(s)	552, 643
DdeI	CTNAG	2 cut(s)	545, 616
DpnI	GATC	1 cut(s)	466
DpnII	GATC	1 cut(s)	464
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Ecl136II	GAGCTC	1 cut(s)	745
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	747
Eco31I	GGTCTC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	745
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	7 cut(s)	131, 190, 205, 247, 697, 793, 865
FaqI	GGGAC	1 cut(s)	829
FatI	CATG	7 cut(s)	127, 186, 201, 243, 693, 789, 861
FauNDI	CATATG	1 cut(s)	386
FokI	GGATG	2 cut(s)	527, 781
FriOI	GRGCYC	1 cut(s)	747
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	391
HaeIII	GGCC	2 cut(s)	90, 525
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	7 cut(s)	131, 190, 205, 247, 697, 793, 865
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	5 cut(s)	247, 274, 737, 772, 827
HpaI	GTTAAC	1 cut(s)	370
HphI	GGTGA	2 cut(s)	172, 805
Hpy166II	GTNNAC	3 cut(s)	370, 411, 612
Hpy188I	TCNGA	1 cut(s)	742
Hpy188III	TCNNGA	1 cut(s)	754
Hpy8I	GTNNAC	3 cut(s)	370, 411, 612
HpyAV	CCTTC	2 cut(s)	130, 403
HpyCH4III	ACNGT	2 cut(s)	352, 703
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	5 cut(s)	80, 401, 593, 612, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	387, 398, 636, 815
HpyF3I	CTNAG	2 cut(s)	545, 616
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	7 cut(s)	131, 190, 205, 247, 697, 793, 865
HspAI	GCGC	1 cut(s)	390
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	464
LmnI	GCTCC	2 cut(s)	142, 496
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	3 cut(s)	73, 352, 689
MalI	GATC	1 cut(s)	466
MboI	GATC	1 cut(s)	464
MboII	GAAGA	3 cut(s)	434, 570, 593
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	2 cut(s)	614, 747
MluCI	AATT	5 cut(s)	109, 426, 473, 495, 874
MlyI	GAGTC	1 cut(s)	836
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	7 cut(s)	101, 209, 295, 383, 722, 808, 863
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	4 cut(s)	53, 279, 306, 369
MslI	CAYNNNNRTG	2 cut(s)	185, 721
MspR9I	CCNGG	1 cut(s)	680
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	4 cut(s)	387, 398, 636, 815
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	1 cut(s)	464
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	7 cut(s)	131, 190, 205, 247, 697, 793, 865
NlaIV	GGNNCC	3 cut(s)	62, 466, 586
NmeAIII	GCCGAG	2 cut(s)	501, 504
NmuCI	GTSAC	2 cut(s)	352, 689
NspI	RCATGY	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	4 cut(s)	247, 274, 737, 772
PleI	GAGTC	1 cut(s)	835
PpsI	GAGTC	1 cut(s)	835
Psp124BI	GAGCTC	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	3 cut(s)	62, 466, 586
PspPI	GGNCC	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	464
RsaI	GTAC	2 cut(s)	553, 644
RsaNI	GTAC	2 cut(s)	552, 643
RseI	CAYNNNNRTG	2 cut(s)	185, 721
SacI	GAGCTC	1 cut(s)	747
SaqAI	TTAA	4 cut(s)	53, 279, 306, 369
Sau3AI	GATC	1 cut(s)	464
Sau96I	GGNCC	1 cut(s)	524
SchI	GAGTC	1 cut(s)	836
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	2 cut(s)	614, 747
SfuI	TTCGAA	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	185, 721
Sse9I	AATT	5 cut(s)	109, 426, 473, 495, 874
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	747
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	352, 703
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	1 cut(s)	233
TasI	AATT	5 cut(s)	109, 426, 473, 495, 874
TfiI	GAWTC	4 cut(s)	247, 274, 737, 772
Tru1I	TTAA	4 cut(s)	53, 279, 306, 369
Tru9I	TTAA	4 cut(s)	53, 279, 306, 369
TseFI	GTSAC	2 cut(s)	352, 689
Tsp45I	GTSAC	2 cut(s)	352, 689
TspDTI	ATGAA	8 cut(s)	20, 203, 373, 520, 547, 586, 663, 710
TspGWI	ACGGA	1 cut(s)	123
VneI	GTGCAC	1 cut(s)	610
XapI	RAATTY	1 cut(s)	426
XceI	RCATGY	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.