Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Forward (+)

24080946 .. 24082822

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012937

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGAAGGAAAAGAAGTCTCCAGTTTCCGATGTGGGAGCGTGGGGTATGAATATTGTGAGCTCCGTGGGCATTATCATGGCCAACAAGCAGCTTATGTCCCCTGCTGGCTTTGCTTTTGGTTTTGCTACAACTTTGACTGGCTTCCACTTCTCTGTTACTGCATTGGTTGGTTTCATATCAAATGCATCTGGGTACTCAGCATCGAAACATGTTCCTCTGTGGGAACTTATTTGGTTCTCACTTGTAGCCAATGCCTCAATCACCGGGATGAACTTGAGTCTCATGCTTAACTCTGTCGGGTTTTATCAGATATCAAAGTTGAGCATGATTCCGGTGGTCTGTGTGATGGAGTGGATTATCCATGGTAAAAATTTCTCAAGGGAAGTCAAGATCGCTGTGGCAGTGGTGGTAGTAGGTGTGGGCATATGTACTGTCACTGATGTTAAAGTTAATGCCAAAGGCTTTCTCTGTGCTTGTGTGGCCATCTTGTGTACATCATTACAACAAATTTCAATAGGTTCATTACAGAAGAAATACTCAGTAGGCTCTTTTGAATTGCTCAGCAAGACAGCTCCAATTCAAGCTATCTCCCTTCTCATTCTTGGTCCATTCGTTGATTACTTTCTTACTGGAAAACTTTTAACAGATTACAAGATGACATCTGGTGCATTTGCTTTTATACTACTCTCATGCTCCCTAGCAGTATTCTGCAACATCAGTCAGTACCTCTGCATCGGAAGATTCTCAGCTGTGTCATTCCAGGTTTTAGGCCACATGAAGACTGTCTGTGTCTTGACATTGGGGTGGCTACTCTTTGATTCAGCGCTCACATTTAAGAACTTGATGGGAATGGCCCTTGCAGTTATCGGCATGATAGTATACAGTTGGGCTGTGGAGGCTGAGAAGCAAACTAAGACGTCCCTCCCAAGCACTCTCACAGAAGAAGATCTAAAACCACTGAAAGAGGGAGTTGCAGAAATCCCATTGAATGGTGAGGCTAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

337

Amino Acids

36.14

Weight (kDa)

8.65

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	22 - 296	5.8e-20	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	923
AccB7I	CCANNNNNTGG	1 cut(s)	992
AccI	GTMKAC	1 cut(s)	882
AcoI	YGGCCR	2 cut(s)	81, 483
AcsI	RAATTY	2 cut(s)	373, 510
AcyI	GRCGYC	1 cut(s)	920
AfaI	GTAC	4 cut(s)	197, 433, 496, 728
AfeI	AGCGCT	1 cut(s)	828
AfiI	CCNNNNNNNGG	1 cut(s)	992
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	516, 557, 584, 991
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	5 cut(s)	63, 94, 575, 587, 752
AluI	AGCT	5 cut(s)	63, 94, 575, 587, 752
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	24, 287
Aor51HI	AGCGCT	1 cut(s)	828
AoxI	GGCC	4 cut(s)	81, 483, 772, 855
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	373, 510
AspLEI	GCGC	1 cut(s)	829
AspS9I	GGNCC	2 cut(s)	608, 856
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	256, 1007
AvaII	GGWCC	1 cut(s)	608
BalI	TGGCCA	2 cut(s)	83, 485
BanII	GRGCYC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	3 cut(s)	343, 494, 841
BciT130I	CCWGG	1 cut(s)	764
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	24, 287
BfaI	CTAG	1 cut(s)	701
BfoI	RGCGCY	1 cut(s)	830
BglII	AGATCT	1 cut(s)	949
BisI	GCNGC	1 cut(s)	92
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	2 cut(s)	268, 764
Bme18I	GGWCC	1 cut(s)	608
BmgT120I	GGNCC	2 cut(s)	608, 856
BmrFI	CCNGG	2 cut(s)	268, 764
BmsI	GCATC	3 cut(s)	197, 212, 744
BpiI	GAAGAC	1 cut(s)	788
BpmI	CTGGAG	1 cut(s)	6
Bpu1102I	GCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	2 cut(s)	298, 364
BpuMI	CCSGG	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	920
BsaJI	CCNNGG	2 cut(s)	66, 364
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	992
Bse1I	ACTGG	3 cut(s)	23, 145, 637
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	2 cut(s)	66, 364
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	992
BseMII	CTCAG	5 cut(s)	213, 555, 577, 762, 894
BseNI	ACTGG	3 cut(s)	23, 145, 637
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	4 cut(s)	83, 485, 774, 857
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	267, 335
BslFI	GGGAC	2 cut(s)	85, 907
BslI	CCNNNNNNNGG	1 cut(s)	992
BsmAI	GTCTC	2 cut(s)	24, 287
BsmFI	GGGAC	2 cut(s)	85, 907
BsnI	GGCC	4 cut(s)	83, 485, 774, 857
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	393, 949
Bsp1720I	GCTNAGC	1 cut(s)	563
Bsp19I	CCATGG	1 cut(s)	364
BspANI	GGCC	4 cut(s)	83, 485, 774, 857
BspCNI	CTCAG	5 cut(s)	212, 554, 576, 761, 895
BsrGI	TGTACA	1 cut(s)	494
BsrI	ACTGG	3 cut(s)	23, 145, 637
BssECI	CCNNGG	2 cut(s)	66, 364
BssMI	GATC	2 cut(s)	393, 949
BssNAI	GTATAC	1 cut(s)	883
BssNI	GRCGYC	1 cut(s)	920
BssT1I	CCWWGG	1 cut(s)	364
Bst1107I	GTATAC	1 cut(s)	883
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	3 cut(s)	436, 787, 887
BstACI	GRCGYC	1 cut(s)	920
BstAUI	TGTACA	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	6 cut(s)	199, 541, 563, 748, 903, 915
BstDSI	CCRYGG	2 cut(s)	66, 364
BstF5I	GGATG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	830
BstHHI	GCGC	1 cut(s)	829
BstKTI	GATC	2 cut(s)	396, 952
BstMAI	GTCTC	2 cut(s)	24, 287
BstMBI	GATC	2 cut(s)	393, 949
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 113, 482, 899
BstNI	CCWGG	1 cut(s)	764
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	266, 762
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BstZ17I	GTATAC	1 cut(s)	883
BsuRI	GGCC	4 cut(s)	83, 485, 774, 857
BtgI	CCRYGG	2 cut(s)	66, 364
BtsCI	GGATG	1 cut(s)	276
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	3 cut(s)	411, 438, 959
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	829
Cfr13I	GGNCC	2 cut(s)	608, 856
Csp6I	GTAC	4 cut(s)	196, 432, 495, 727
CviAII	CATG	8 cut(s)	79, 212, 286, 328, 365, 693, 778, 874
CviQI	GTAC	4 cut(s)	196, 432, 495, 727
DdeI	CTNAG	6 cut(s)	199, 541, 563, 748, 903, 915
DpnI	GATC	2 cut(s)	395, 951
DpnII	GATC	2 cut(s)	393, 949
EaeI	YGGCCR	2 cut(s)	81, 483
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	608
Eco47III	AGCGCT	1 cut(s)	828
Eco53kI	GAGCTC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	762
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	8 cut(s)	82, 215, 289, 331, 368, 696, 781, 877
FaqI	GGGAC	2 cut(s)	85, 907
FatI	CATG	8 cut(s)	78, 211, 285, 327, 364, 692, 777, 873
FauNDI	CATATG	1 cut(s)	428
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	283
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	701
GlaI	GCGC	1 cut(s)	828
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	830
HaeIII	GGCC	4 cut(s)	83, 485, 774, 857
HapII	CCGG	2 cut(s)	267, 335
HhaI	GCGC	1 cut(s)	829
Hin1I	GRCGYC	1 cut(s)	920
Hin1II	CATG	8 cut(s)	82, 215, 289, 331, 368, 696, 781, 877
Hin6I	GCGC	1 cut(s)	827
HinP1I	GCGC	1 cut(s)	827
HinfI	GANTC	4 cut(s)	280, 331, 744, 821
HpaII	CCGG	2 cut(s)	267, 335
HphI	GGTGA	2 cut(s)	256, 1007
Hpy166II	GTNNAC	2 cut(s)	495, 883
Hpy188I	TCNGA	3 cut(s)	31, 312, 740
Hpy188III	TCNNGA	2 cut(s)	391, 796
Hpy8I	GTNNAC	2 cut(s)	495, 883
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	3 cut(s)	436, 787, 887
HpyCH4IV	ACGT	1 cut(s)	920
HpyCH4V	TGCA	7 cut(s)	164, 188, 671, 714, 735, 863, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 113, 482, 899
HpyF3I	CTNAG	6 cut(s)	199, 541, 563, 748, 903, 915
HpySE526I	ACGT	1 cut(s)	920
Hsp92I	GRCGYC	1 cut(s)	920
Hsp92II	CATG	8 cut(s)	82, 215, 289, 331, 368, 696, 781, 877
HspAI	GCGC	1 cut(s)	827
Kzo9I	GATC	2 cut(s)	393, 949
LmnI	GCTCC	4 cut(s)	38, 68, 580, 701
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	3 cut(s)	197, 212, 744
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	920
MaeIII	GTNAC	2 cut(s)	157, 436
MalI	GATC	2 cut(s)	395, 951
MboI	GATC	2 cut(s)	393, 949
MboII	GAAGA	5 cut(s)	544, 753, 793, 956, 959
MflI	RGATCY	1 cut(s)	949
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	2 cut(s)	83, 485
MluCI	AATT	4 cut(s)	373, 510, 557, 579
MluNI	TGGCCA	2 cut(s)	83, 485
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	228, 268, 740, 892, 935, 961, 991
Mox20I	TGGCCA	2 cut(s)	83, 485
Mph1103I	ATGCAT	1 cut(s)	190
MscI	TGGCCA	2 cut(s)	83, 485
MseI	TTAA	5 cut(s)	291, 447, 453, 644, 837
MslI	CAYNNNNRTG	3 cut(s)	77, 269, 805
Msp20I	TGGCCA	2 cut(s)	83, 485
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	2 cut(s)	267, 335
MspR9I	CCNGG	2 cut(s)	268, 764
MvaI	CCWGG	1 cut(s)	764
MwoI	GCNNNNNNNGC	4 cut(s)	69, 113, 482, 899
NciI	CCSGG	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	364
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	2 cut(s)	393, 949
NlaIII	CATG	8 cut(s)	82, 215, 289, 331, 368, 696, 781, 877
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	331, 744, 821
PflMI	CCANNNNNTGG	1 cut(s)	992
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PscI	ACATGT	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	762
PspGI	CCWGG	1 cut(s)	762
PspPI	GGNCC	2 cut(s)	608, 856
PsuI	RGATCY	1 cut(s)	949
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	4 cut(s)	197, 433, 496, 728
RsaNI	GTAC	4 cut(s)	196, 432, 495, 727
RseI	CAYNNNNRTG	3 cut(s)	77, 269, 805
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	5 cut(s)	291, 447, 453, 644, 837
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	393, 949
Sau96I	GGNCC	2 cut(s)	608, 856
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	268, 764
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	3 cut(s)	197, 212, 744
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	3 cut(s)	77, 269, 805
SmlI	CTYRAG	2 cut(s)	277, 379
SmoI	CTYRAG	2 cut(s)	277, 379
Sse9I	AATT	4 cut(s)	373, 510, 557, 579
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	1 cut(s)	701
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	266, 762
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	3 cut(s)	436, 787, 887
TaiI	ACGT	1 cut(s)	923
TaqI	TCGA	1 cut(s)	206
TasI	AATT	4 cut(s)	373, 510, 557, 579
TatI	WGTACW	2 cut(s)	431, 494
TfiI	GAWTC	3 cut(s)	331, 744, 821
Tru1I	TTAA	5 cut(s)	291, 447, 453, 644, 837
Tru9I	TTAA	5 cut(s)	291, 447, 453, 644, 837
TscAI	CASTG	3 cut(s)	411, 445, 966
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	5 cut(s)	65, 166, 287, 513, 794
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	3 cut(s)	411, 445, 966
Van91I	CCANNNNNTGG	1 cut(s)	992
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	2 cut(s)	373, 510
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	882
XspI	CTAG	1 cut(s)	701
ZraI	GACGTC	1 cut(s)	921
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.