Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8042740.1

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 271

Gene Structure 271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8042740.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

atttccaagttgagcatgattcctgtggtttgtgtgatggaatggattcttaacaacaagcagtattccaaggaggttaaagtggctgttgtggttgtggttataggtgttggtgtttgtactgtgactgatgtgaaagttaacctcaaaggcttcatatgcgcctgcctagcagttttgtccacttctttccagcaaattgtgagtgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

70

Amino Acids

7.54

Weight (kDa)

8.83

Isoelectric Point (pI)

23.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	121
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 170
Cac8I	GCNNGC	1 cut(s)	166
CfoI	GCGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	2 cut(s)	86, 153
CviKI_1	RGCY	2 cut(s)	86, 153
CviQI	GTAC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	19
FaiI	YATR	4 cut(s)	17, 104, 158, 160
FatI	CATG	1 cut(s)	15
FauNDI	CATATG	1 cut(s)	158
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	2 cut(s)	19, 46
HpaI	GTTAAC	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	142, 183
Hpy8I	GTNNAC	2 cut(s)	142, 183
HpyCH4III	ACNGT	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 170
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	162
KspAI	GTTAAC	1 cut(s)	142
LpnPI	CCDG	3 cut(s)	36, 178, 206
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	124
MluCI	AATT	1 cut(s)	198
MnlI	CCTC	2 cut(s)	67, 155
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	3 cut(s)	51, 78, 141
MwoI	GCNNNNNNNGC	2 cut(s)	159, 170
NdeI	CATATG	1 cut(s)	158
NlaIII	CATG	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	19, 46
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	51, 78, 141
SetI	ASST	3 cut(s)	78, 109, 147
SgeI	CNNG	8 cut(s)	19, 28, 35, 70, 82, 177, 182, 205
Sse9I	AATT	1 cut(s)	198
SspMI	CTAG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	1 cut(s)	198
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	19, 46
Tru1I	TTAA	3 cut(s)	51, 78, 141
Tru9I	TTAA	3 cut(s)	51, 78, 141
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.