Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

35848150 .. 35850395

Gene Structure 2246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19507

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAAGTCGGCCAGAAGAAATCGTCGGCGGCAGTTTCCGATGTGGGAGCGTGGGCCATGAACGTCATCAGTTCCGTCGGGATTATCATGGCCAACAAGCAGCTCATGTCCAACGCCGGCTATGCTTTCTCTTTCGCCACCACTTTAACTGGGTTCCATTTTTCTGTAACTGCACTCGTTGGCCTCGTCTCCAATGCTAGCGGTTATTCTGCCTCCAAGCATGTTCCCTTTTGGGAGCTTCTTTGGTTCTCCATCGTTGCCAATGTCTCCATCACCGCCATGAACTTCAGCCTCATGCTCAACTCTGTCGGCTTTTACCAGATTTCGAAGTTGAGCATGATTCCCGTGGTTTGTGTGATGGAATGGATTCTTAACAACAAGCAGTATTCCAAGGAGGTTAAAATGGCTGTTGTGGTTGTGGTTATAGGTGTTGGTGTTTGTACCGTGACTGATGTGAAAGTTAACCTCAAAGGCTTCATATGCGCCTGCCTAGCAGTTTTGTCCACTTCTTTCCAGCAAATTTCTATCGGGTCTCTTCAAAAGAAACATTCAGTTGGATCCTTTGAATTGCTGAGTAAGACTGCTCCAATTCAAGCCACTTCTCTACTCATTCTCGGCCCATTCATTGATTACATCCTTAATGGTACATTCATAACAGACTATAAGATGTCTTCTGGTGCCATTGCATTCATTCTTCTTTCGTGCACCTTAGCTGTGTTTTGCAATATTAGCCAGTACCTCTGTATTGGACGTTTCTCTGCTGTTTCATTCCAGGTTTTAGGTCACATGAAAACAGTATGTGTCCTCACATTAGGGTGGCTTCTCTTTGATTCAGAGCTCACTTTCAAGAACATTATGGGGATGATTCTTGCAGTCGTTGGCATGGTGATTTATAGTTGGGCTGTCGAGGCAGAAAAACAGTCTGGCAAACCCGTGTCCCATTCAAAAACCAGCATGACAGAAGAGGAAATTGAACTTTTGAAGGCAGGACTGGATACCACTACTGTGAAGGATGTTGAACATGGAGCAACTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

346

Amino Acids

37.34

Weight (kDa)

8.34

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	25 - 299	9e-19	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	677
AciI	CCGC	3 cut(s)	29, 201, 276
AclWI	GGATC	2 cut(s)	552, 565
AcoI	YGGCCR	2 cut(s)	10, 90
AcsI	RAATTY	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	271
AfaI	GTAC	3 cut(s)	442, 646, 737
AgsI	TTSAA	8 cut(s)	539, 566, 593, 847, 945, 974, 982, 1019
AjnI	CCWGG	1 cut(s)	771
AleI	CACNNNNGTG	1 cut(s)	1004
AluBI	AGCT	4 cut(s)	103, 238, 713, 838
AluI	AGCT	4 cut(s)	103, 238, 713, 838
Alw21I	GWGCWC	2 cut(s)	707, 840
Alw26I	GTCTC	3 cut(s)	193, 271, 537
Alw44I	GTGCAC	1 cut(s)	703
AlwI	GGATC	2 cut(s)	552, 565
AoxI	GGCC	5 cut(s)	10, 54, 90, 181, 616
ApaLI	GTGCAC	1 cut(s)	703
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	2 cut(s)	54, 617
AsuHPI	GGTGA	2 cut(s)	265, 898
AsuII	TTCGAA	1 cut(s)	326
AsuNHI	GCTAGC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	707
BalI	TGGCCA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	557
BanI	GGYRCC	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	840
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	2 cut(s)	707, 840
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	3 cut(s)	260, 278, 352
BciT130I	CCWGG	1 cut(s)	773
BciVI	GTATCC	1 cut(s)	988
BcoDI	GTCTC	3 cut(s)	193, 271, 537
BfaI	CTAG	2 cut(s)	198, 491
BfuI	GTATCC	1 cut(s)	988
BisI	GCNGC	2 cut(s)	30, 101
BlsI	GCNGC	2 cut(s)	31, 102
Bme1390I	CCNGG	1 cut(s)	773
BmgT120I	GGNCC	2 cut(s)	54, 617
BmiI	GGNNCC	3 cut(s)	155, 559, 679
BmrFI	CCNGG	1 cut(s)	773
BmrI	ACTGGG	1 cut(s)	159
BmtI	GCTAGC	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	663
Bpu10I	CCTNAGC	1 cut(s)	709
Bpu14I	TTCGAA	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	345, 390
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	3 cut(s)	154, 733, 996
Bse3DI	GCAATG	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	2 cut(s)	345, 390
BseGI	GGATG	3 cut(s)	633, 867, 1018
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	3 cut(s)	154, 733, 996
BseSI	GKGCMC	1 cut(s)	707
BseXI	GCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	5 cut(s)	12, 56, 92, 183, 618
BshNI	GGYRCC	1 cut(s)	677
BsiHKAI	GWGCWC	2 cut(s)	707, 840
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	922
BsmAI	GTCTC	3 cut(s)	193, 271, 537
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	922
BsmI	GAATGC	1 cut(s)	686
BsnI	GGCC	5 cut(s)	12, 56, 92, 183, 618
Bso31I	GGTCTC	1 cut(s)	537
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	707, 840
Bsp143I	GATC	1 cut(s)	557
BspACI	CCGC	3 cut(s)	29, 201, 276
BspANI	GGCC	5 cut(s)	12, 56, 92, 183, 618
BspCNI	CTCAG	1 cut(s)	564
BspLI	GGNNCC	3 cut(s)	155, 559, 679
BspOI	GCTAGC	1 cut(s)	201
BspPI	GGATC	2 cut(s)	552, 565
BspT104I	TTCGAA	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	677
BspTNI	GGTCTC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	681
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	3 cut(s)	154, 733, 996
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	345, 390
BssMI	GATC	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	4 cut(s)	445, 796, 921, 1006
Bst6I	CTCTTC	2 cut(s)	540, 957
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	3 cut(s)	118, 199, 487
BstDEI	CTNAG	2 cut(s)	572, 709
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	633, 867, 1018
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	1 cut(s)	560
BstMAI	GTCTC	3 cut(s)	193, 271, 537
BstMBI	GATC	1 cut(s)	557
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 480, 491, 729, 908
BstNI	CCWGG	1 cut(s)	773
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	771
BstSLI	GKGCMC	1 cut(s)	707
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BsuI	GTATCC	1 cut(s)	988
BsuRI	GGCC	5 cut(s)	12, 56, 92, 183, 618
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	3 cut(s)	633, 867, 1018
Cac8I	GCNNGC	3 cut(s)	118, 199, 487
CfoI	GCGC	1 cut(s)	485
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	54, 617
Csp6I	GTAC	3 cut(s)	441, 645, 736
CviQI	GTAC	3 cut(s)	441, 645, 736
DdeI	CTNAG	2 cut(s)	572, 709
DpnI	GATC	1 cut(s)	559
DpnII	GATC	1 cut(s)	557
EaeI	YGGCCR	2 cut(s)	10, 90
Eam1104I	CTCTTC	2 cut(s)	540, 957
EarI	CTCTTC	2 cut(s)	540, 957
Ecl136II	GAGCTC	1 cut(s)	838
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	840
Eco31I	GGTCTC	1 cut(s)	537
Eco53kI	GAGCTC	1 cut(s)	838
Eco57I	CTGAAG	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	838
EcoRII	CCWGG	1 cut(s)	771
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	840
ErhI	CCWWGG	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	193
FaqI	GGGAC	1 cut(s)	922
FauNDI	CATATG	1 cut(s)	479
Fnu4HI	GCNGC	2 cut(s)	30, 101
FokI	GGATG	3 cut(s)	620, 874, 1025
FriOI	GRGCYC	1 cut(s)	840
Fsp4HI	GCNGC	2 cut(s)	30, 101
FspBI	CTAG	2 cut(s)	198, 491
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	2 cut(s)	30, 101
HaeIII	GGCC	5 cut(s)	12, 56, 92, 183, 618
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	485
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	4 cut(s)	340, 367, 830, 865
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	2 cut(s)	265, 898
Hpy166II	GTNNAC	3 cut(s)	463, 504, 705
Hpy188I	TCNGA	2 cut(s)	40, 835
Hpy188III	TCNNGA	2 cut(s)	79, 847
Hpy8I	GTNNAC	3 cut(s)	463, 504, 705
Hpy99I	CGWCG	2 cut(s)	28, 80
HpyAV	CCTTC	2 cut(s)	976, 1003
HpyCH4III	ACNGT	4 cut(s)	445, 796, 921, 1006
HpyCH4IV	ACGT	2 cut(s)	63, 751
HpyCH4V	TGCA	5 cut(s)	173, 686, 705, 723, 872
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 480, 491, 729, 908
HpyF3I	CTNAG	2 cut(s)	572, 709
HpySE526I	ACGT	2 cut(s)	63, 751
HspAI	GCGC	1 cut(s)	483
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	557
LmnI	GCTCC	4 cut(s)	47, 235, 589, 1025
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	198, 491
MaeII	ACGT	2 cut(s)	63, 751
MaeIII	GTNAC	3 cut(s)	166, 445, 782
MalI	GATC	1 cut(s)	559
MboI	GATC	1 cut(s)	557
MboII	GAAGA	5 cut(s)	28, 527, 663, 686, 974
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	2 cut(s)	707, 840
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	4 cut(s)	519, 566, 588, 969
MluNI	TGGCCA	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	135, 535
MnlI	CCTC	9 cut(s)	194, 223, 302, 388, 476, 749, 815, 901, 958
Mox20I	TGGCCA	1 cut(s)	92
MroNI	GCCGGC	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	5 cut(s)	146, 372, 399, 462, 639
MslI	CAYNNNNRTG	3 cut(s)	278, 814, 1004
Msp20I	TGGCCA	1 cut(s)	92
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	773
Mva1269I	GAATGC	1 cut(s)	686
MvaI	CCWGG	1 cut(s)	773
MwoI	GCNNNNNNNGC	5 cut(s)	122, 480, 491, 729, 908
NaeI	GCCGGC	1 cut(s)	118
NdeI	CATATG	1 cut(s)	479
NdeII	GATC	1 cut(s)	557
NgoMIV	GCCGGC	1 cut(s)	116
NheI	GCTAGC	1 cut(s)	197
NlaIV	GGNNCC	3 cut(s)	155, 559, 679
NmeAIII	GCCGAG	1 cut(s)	594
NmuCI	GTSAC	2 cut(s)	445, 782
NspI	RCATGY	1 cut(s)	224
NspV	TTCGAA	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	1004
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	686
PdiI	GCCGGC	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	4 cut(s)	340, 367, 830, 865
PkrI	GCNGC	2 cut(s)	31, 102
Psp124BI	GAGCTC	1 cut(s)	840
Psp6I	CCWGG	1 cut(s)	771
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	3 cut(s)	155, 559, 679
PspPI	GGNCC	2 cut(s)	54, 617
PsuI	RGATCY	1 cut(s)	557
RsaI	GTAC	3 cut(s)	442, 646, 737
RsaNI	GTAC	3 cut(s)	441, 645, 736
RseI	CAYNNNNRTG	3 cut(s)	278, 814, 1004
SacI	GAGCTC	1 cut(s)	840
SaqAI	TTAA	5 cut(s)	146, 372, 399, 462, 639
SatI	GCNGC	2 cut(s)	30, 101
Sau3AI	GATC	1 cut(s)	557
Sau96I	GGNCC	2 cut(s)	54, 617
ScrFI	CCNGG	1 cut(s)	773
SduI	GDGCHC	2 cut(s)	707, 840
SfuI	TTCGAA	1 cut(s)	326
SmiMI	CAYNNNNRTG	3 cut(s)	278, 814, 1004
Sse9I	AATT	4 cut(s)	519, 566, 588, 969
SsiI	CCGC	3 cut(s)	29, 201, 276
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	2 cut(s)	198, 491
SstI	GAGCTC	1 cut(s)	840
StyD4I	CCNGG	1 cut(s)	771
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	4 cut(s)	445, 796, 921, 1006
TaiI	ACGT	2 cut(s)	66, 754
TaqI	TCGA	2 cut(s)	326, 906
TasI	AATT	4 cut(s)	519, 566, 588, 969
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	4 cut(s)	340, 367, 830, 865
Tru1I	TTAA	5 cut(s)	146, 372, 399, 462, 639
Tru9I	TTAA	5 cut(s)	146, 372, 399, 462, 639
TseFI	GTSAC	2 cut(s)	445, 782
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	2 cut(s)	445, 782
TspDTI	ATGAA	8 cut(s)	74, 296, 466, 613, 640, 679, 756, 803
TspGWI	ACGGA	1 cut(s)	64
VneI	GTGCAC	1 cut(s)	703
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	2 cut(s)	198, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.