Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

18247101 .. 18249763

Gene Structure 2663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26900.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAAGGCCTCAGCCAGAAGAAATCGCCGGCGGCAGTCTCCGATGTGGGAGCCTGGGCCATGAACGTCATCAGCTCCGTCGGGATTATCATGGCCAACAAGCAGCTCATGTCCACCGCCGGCTATGCTTTCTCTTTCGCCACCACTTTGACTGGTTTCCATTTTGCTGTAACTGCACTGGTTGGCTTTGTCTCCAATGCTAGCGGTTATTCTGCCTCCAAGCAAGTTCCATTTTGGGAGCTTCTTTGGTTCTCCATTGTTGCTAATGTCTCCATCACTGCGATGAACTTTAGCCTCATGCTTAACTCTGTCGGCTTTTATCAGATTTCAAAGTTGAGCATGATTCCCGTGGTTTGTGTGATGGAATGGATTATTAACAACAAGAAGTATTCAAAGGAGGTTAAAATGTCTGTTGTGGTTGTTGTTATAGGTGTTGGTGTTTGTACTGTGACTGATGTGAAAGTTAACCTCAAAGGCTTCATATGCGCGTGTCTAGCAGTTTTGTCCACTTCTTTCCAGCAAATTTCTATTGGATCTCTTCAAAAGAAGCATTCAGTTGGATCGTTTGAATTGCTGAGTAAGACTGCTCCAATTCAAGCCGTATCTCTTCTCATTTTCGGCCCATTCATTGATTACTGCCTTAGTGGTATATTCATAATGAACTACCAGATGTCTTCTGGTGTCATTGCATTCATTCTTCTTTCATGCTCCTTAGCTGTGTTCTGCAATATTAGCCAGTACCTCTGCATTGGACGTTTCTCTGCTGTTTCATTCCAGGTTTTAGGTCACATGAAAACAGTATGCGTCCTCACACTAGGGTGGCTTCTCTTTGATTCAGAGCTTACTTTCAAGAACATTATGGGGATGATTATTGCAGTCGTCGGCATGGTGATTTATAGTTGGGCTGTGGAGGCAGAAAAACAGCCAGGCAAACCCTTGAGCAATTCAAAAACCAGCCTGACAGAAGAGGAAATTAATCTTTTGAAGGTAGGACTGGATACCAGTGCTACTGTGAAGGATGTTGAACATGCAGCAACTAAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

349

Amino Acids

37.6

Weight (kDa)

8.65

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	26 - 300	3e-19	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	488
AciI	CCGC	3 cut(s)	32, 117, 204
AclWI	GGATC	2 cut(s)	541, 568
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	522
AfaI	GTAC	2 cut(s)	445, 740
AgsI	TTSAA	9 cut(s)	330, 393, 542, 569, 596, 850, 948, 985, 1025
AjnI	CCWGG	3 cut(s)	53, 774, 925
AleI	CACNNNNGTG	1 cut(s)	817
AluBI	AGCT	5 cut(s)	75, 106, 241, 716, 841
AluI	AGCT	5 cut(s)	75, 106, 241, 716, 841
Alw26I	GTCTC	3 cut(s)	43, 196, 274
AlwI	GGATC	2 cut(s)	541, 568
AoxI	GGCC	4 cut(s)	7, 57, 93, 619
ApeKI	GCWGC	2 cut(s)	103, 1031
ApoI	RAATTY	1 cut(s)	522
AseI	ATTAAT	1 cut(s)	975
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	2 cut(s)	57, 620
AsuHPI	GGTGA	1 cut(s)	901
AsuNHI	GCTAGC	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	666
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	115, 1043
BccI	CCATC	2 cut(s)	281, 355
BceAI	ACGGC	1 cut(s)	584
BciT130I	CCWGG	3 cut(s)	55, 776, 927
BciVI	GTATCC	1 cut(s)	991
BcoDI	GTCTC	3 cut(s)	43, 196, 274
BfaI	CTAG	3 cut(s)	201, 494, 815
BfmI	CTRYAG	1 cut(s)	1043
BfuI	GTATCC	1 cut(s)	991
BisI	GCNGC	3 cut(s)	33, 104, 1032
BlsI	GCNGC	3 cut(s)	34, 105, 1033
Bme1390I	CCNGG	3 cut(s)	55, 776, 927
BmgT120I	GGNCC	2 cut(s)	57, 620
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	3 cut(s)	55, 776, 927
BmtI	GCTAGC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	666
Bpu10I	CCTNAGC	2 cut(s)	11, 712
BpuEI	CTTGAG	1 cut(s)	958
BsaJI	CCNNGG	2 cut(s)	54, 348
Bse118I	RCCGGY	2 cut(s)	28, 119
Bse1I	ACTGG	5 cut(s)	157, 183, 736, 999, 1002
Bse3DI	GCAATG	1 cut(s)	684
BseBI	CCWGG	3 cut(s)	55, 776, 927
BseDI	CCNNGG	2 cut(s)	54, 348
BseGI	GGATG	2 cut(s)	870, 1024
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	2 cut(s)	25, 566
BseNI	ACTGG	5 cut(s)	157, 183, 736, 999, 1002
BseXI	GCAGC	2 cut(s)	115, 1043
BsgI	GTGCAG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	488
BshFI	GGCC	4 cut(s)	9, 59, 95, 621
BsiSI	CCGG	2 cut(s)	29, 120
BsmAI	GTCTC	3 cut(s)	43, 196, 274
BsmI	GAATGC	2 cut(s)	550, 689
BsnI	GGCC	4 cut(s)	9, 59, 95, 621
Bsp143I	GATC	2 cut(s)	533, 560
BspACI	CCGC	3 cut(s)	32, 117, 204
BspANI	GGCC	4 cut(s)	9, 59, 95, 621
BspCNI	CTCAG	2 cut(s)	24, 567
BspFNI	CGCG	1 cut(s)	488
BspLI	GGNNCC	1 cut(s)	52
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	541, 568
BsrDI	GCAATG	1 cut(s)	684
BsrFI	RCCGGY	2 cut(s)	28, 119
BsrI	ACTGG	5 cut(s)	157, 183, 736, 999, 1002
BssAI	RCCGGY	2 cut(s)	28, 119
BssECI	CCNNGG	2 cut(s)	54, 348
BssMI	GATC	2 cut(s)	533, 560
Bst2UI	CCWGG	3 cut(s)	55, 776, 927
Bst4CI	ACNGT	3 cut(s)	448, 799, 1012
Bst6I	CTCTTC	3 cut(s)	543, 612, 960
BstC8I	GCNNGC	3 cut(s)	30, 121, 202
BstDEI	CTNAG	4 cut(s)	11, 575, 641, 712
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	870, 1024
BstFNI	CGCG	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	2 cut(s)	536, 563
BstMAI	GTCTC	3 cut(s)	43, 196, 274
BstMBI	GATC	2 cut(s)	533, 560
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 173, 483, 494, 732, 911
BstNI	CCWGG	3 cut(s)	55, 776, 927
BstNSI	RCATGY	1 cut(s)	1031
BstSCI	CCNGG	3 cut(s)	53, 774, 925
BstSFI	CTRYAG	1 cut(s)	1043
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	2 cut(s)	115, 1043
BstV2I	GAAGAC	1 cut(s)	666
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BsuI	GTATCC	1 cut(s)	991
BsuRI	GGCC	4 cut(s)	9, 59, 95, 621
BtgI	CCRYGG	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	296
BtsCI	GGATG	2 cut(s)	870, 1024
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	176, 276, 1009
Cac8I	GCNNGC	3 cut(s)	30, 121, 202
CfoI	GCGC	1 cut(s)	488
Cfr10I	RCCGGY	2 cut(s)	28, 119
Cfr13I	GGNCC	2 cut(s)	57, 620
CseI	GACGC	1 cut(s)	793
Csp6I	GTAC	2 cut(s)	444, 739
CviAII	CATG	9 cut(s)	61, 91, 109, 298, 340, 705, 790, 886, 1028
CviQI	GTAC	2 cut(s)	444, 739
DdeI	CTNAG	4 cut(s)	11, 575, 641, 712
DpnI	GATC	2 cut(s)	535, 562
DpnII	GATC	2 cut(s)	533, 560
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	3 cut(s)	543, 612, 960
EarI	CTCTTC	3 cut(s)	543, 612, 960
Eco147I	AGGCCT	1 cut(s)	9
EcoRII	CCWGG	3 cut(s)	53, 774, 925
FaeI	CATG	9 cut(s)	64, 94, 112, 301, 343, 708, 793, 889, 1031
FatI	CATG	9 cut(s)	60, 90, 108, 297, 339, 704, 789, 885, 1027
FauNDI	CATATG	1 cut(s)	482
Fnu4HI	GCNGC	3 cut(s)	33, 104, 1032
FokI	GGATG	2 cut(s)	877, 1031
Fsp4HI	GCNGC	3 cut(s)	33, 104, 1032
FspBI	CTAG	3 cut(s)	201, 494, 815
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	3 cut(s)	33, 104, 1032
HaeIII	GGCC	4 cut(s)	9, 59, 95, 621
HapII	CCGG	2 cut(s)	29, 120
HgaI	GACGC	1 cut(s)	793
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	9 cut(s)	64, 94, 112, 301, 343, 708, 793, 889, 1031
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	2 cut(s)	343, 833
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	29, 120
HphI	GGTGA	1 cut(s)	901
Hpy166II	GTNNAC	3 cut(s)	114, 466, 507
Hpy188I	TCNGA	3 cut(s)	43, 324, 838
Hpy188III	TCNNGA	2 cut(s)	82, 850
Hpy8I	GTNNAC	3 cut(s)	114, 466, 507
Hpy99I	CGWCG	2 cut(s)	83, 884
HpyAV	CCTTC	2 cut(s)	979, 1009
HpyCH4III	ACNGT	3 cut(s)	448, 799, 1012
HpyCH4IV	ACGT	2 cut(s)	66, 754
HpyCH4V	TGCA	6 cut(s)	176, 689, 726, 747, 875, 1031
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 173, 483, 494, 732, 911
HpyF3I	CTNAG	4 cut(s)	11, 575, 641, 712
HpySE526I	ACGT	2 cut(s)	66, 754
Hsp92II	CATG	9 cut(s)	64, 94, 112, 301, 343, 708, 793, 889, 1031
HspAI	GCGC	1 cut(s)	486
KroI	GCCGGC	2 cut(s)	28, 119
KroNI	GCCGGC	2 cut(s)	30, 121
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	533, 560
LmnI	GCTCC	5 cut(s)	50, 80, 238, 592, 713
Lsp1109I	GCAGC	2 cut(s)	115, 1043
MaeI	CTAG	3 cut(s)	201, 494, 815
MaeII	ACGT	2 cut(s)	66, 754
MaeIII	GTNAC	3 cut(s)	169, 448, 785
MalI	GATC	2 cut(s)	535, 562
MboI	GATC	2 cut(s)	533, 560
MboII	GAAGA	6 cut(s)	31, 530, 599, 666, 689, 977
MflI	RGATCY	1 cut(s)	533
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	5 cut(s)	522, 569, 591, 943, 972
MluNI	TGGCCA	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	9 cut(s)	20, 226, 305, 391, 479, 752, 818, 904, 961
Mox20I	TGGCCA	1 cut(s)	95
MreI	CGCCGGCG	1 cut(s)	28
MroNI	GCCGGC	2 cut(s)	28, 119
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	5 cut(s)	303, 375, 402, 465, 975
MslI	CAYNNNNRTG	2 cut(s)	281, 817
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	2 cut(s)	29, 120
MspR9I	CCNGG	3 cut(s)	55, 776, 927
Mva1269I	GAATGC	2 cut(s)	550, 689
MvaI	CCWGG	3 cut(s)	55, 776, 927
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	6 cut(s)	125, 173, 483, 494, 732, 911
NaeI	GCCGGC	2 cut(s)	30, 121
NdeI	CATATG	1 cut(s)	482
NdeII	GATC	2 cut(s)	533, 560
NgoMIV	GCCGGC	2 cut(s)	28, 119
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	9 cut(s)	64, 94, 112, 301, 343, 708, 793, 889, 1031
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	2 cut(s)	448, 785
NspI	RCATGY	1 cut(s)	1031
OliI	CACNNNNGTG	1 cut(s)	817
PceI	AGGCCT	1 cut(s)	9
PctI	GAATGC	2 cut(s)	550, 689
PdiI	GCCGGC	2 cut(s)	30, 121
PfeI	GAWTC	2 cut(s)	343, 833
PkrI	GCNGC	3 cut(s)	34, 105, 1033
PshBI	ATTAAT	1 cut(s)	975
Psp6I	CCWGG	3 cut(s)	53, 774, 925
PspGI	CCWGG	3 cut(s)	53, 774, 925
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	2 cut(s)	57, 620
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	2 cut(s)	445, 740
RsaNI	GTAC	2 cut(s)	444, 739
RseI	CAYNNNNRTG	2 cut(s)	281, 817
SaqAI	TTAA	5 cut(s)	303, 375, 402, 465, 975
SatI	GCNGC	3 cut(s)	33, 104, 1032
Sau3AI	GATC	2 cut(s)	533, 560
Sau96I	GGNCC	2 cut(s)	57, 620
ScrFI	CCNGG	3 cut(s)	55, 776, 927
SfcI	CTRYAG	1 cut(s)	1043
SgrAI	CRCCGGYG	1 cut(s)	28
SmiMI	CAYNNNNRTG	2 cut(s)	281, 817
SmlI	CTYRAG	1 cut(s)	937
SmoI	CTYRAG	1 cut(s)	937
Sse9I	AATT	5 cut(s)	522, 569, 591, 943, 972
SseBI	AGGCCT	1 cut(s)	9
SsiI	CCGC	3 cut(s)	32, 117, 204
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	3 cut(s)	201, 494, 815
StuI	AGGCCT	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	53, 774, 925
TaaI	ACNGT	3 cut(s)	448, 799, 1012
TaiI	ACGT	2 cut(s)	69, 757
TasI	AATT	5 cut(s)	522, 569, 591, 943, 972
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	343, 833
Tru1I	TTAA	5 cut(s)	303, 375, 402, 465, 975
Tru9I	TTAA	5 cut(s)	303, 375, 402, 465, 975
TscAI	CASTG	3 cut(s)	183, 283, 1009
TseFI	GTSAC	2 cut(s)	448, 785
TseI	GCWGC	2 cut(s)	103, 1031
Tsp45I	GTSAC	2 cut(s)	448, 785
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	3 cut(s)	183, 283, 1009
VspI	ATTAAT	1 cut(s)	975
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	1 cut(s)	1031
XcmI	CCANNNNNNNNNTGG	1 cut(s)	674
XspI	CTAG	3 cut(s)	201, 494, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.