Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

4375395 .. 4378184

Gene Structure 2790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28814

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTGGGAGCATGGGAGCCACTTCTCTGTTACTGCATTGGTTGGTTTCATATCGAATGCATCTGGGTACTCAGCATCGAAACACGTTCCTCTTTGGGAACTTATTTGGTTCTCACTTGTAGCCAATGCCTCAATTACAGGGATGAACTTGAGTCTCATGCTTAACTCTGTCTGCTTTTATCAGATATCGAAGTTGAGCATGATTCCGGTGGTCTCTGTGATGGAGTGGATTATCCACGGTGTGGGCATATGTACCGTCACCGATGTTAAAGTTAATGCCAAAGGTTTTCTCTGTGCTTCTGTGGCCATCTTGTGTACATCATTACAACAAATTTCAATAGGTTCATTACAGAAGAAATACTCAGTAGGCTCTTTTGATTGCTCAGAAAGACGGCTCCAATTCAAGCTATCTCCCTTCTCATTCTTGGTCCATTTGTTTGCATTTGCATTCATAATGCTCTCTTGCTCCCTAGCAGTATTCTGCAACATCAGTTGGTACCTCTGCATCGGAAGATTCTCAGCCGTGTCATTCCAGGTTTTATTTATTTTTGGCCACATGAAGACTGTCTGTGTCTTGACATTGGGGTGGCTTCTCTTTGATTCAGCTCTCACATTTAAGAACTTGATGGGAATGGCTCTTGCAGTTGTCGGCATTATAGTTTACAGTTGGGTTGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

226

Amino Acids

24.88

Weight (kDa)

8.76

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	495
AccB7I	CCANNNNNTGG	1 cut(s)	241
AcoI	YGGCCR	2 cut(s)	303, 550
AcsI	RAATTY	1 cut(s)	330
AdeI	CACNNNGTG	1 cut(s)	241
AfaI	GTAC	4 cut(s)	68, 253, 316, 497
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	336, 403
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	2 cut(s)	406, 605
AluI	AGCT	2 cut(s)	406, 605
Alw26I	GTCTC	2 cut(s)	158, 217
AoxI	GGCC	2 cut(s)	303, 550
ApoI	RAATTY	1 cut(s)	330
Asp718I	GGTACC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	427
BalI	TGGCCA	2 cut(s)	305, 552
BanI	GGYRCC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	566
BccI	CCATC	3 cut(s)	214, 314, 619
BceAI	ACGGC	2 cut(s)	407, 506
BciT130I	CCWGG	1 cut(s)	533
BcoDI	GTCTC	2 cut(s)	158, 217
BfaI	CTAG	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	533
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	3 cut(s)	17, 395, 497
BmrFI	CCNGG	1 cut(s)	533
BmsI	GCATC	3 cut(s)	68, 83, 513
BpiI	GAAGAC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	533
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	4 cut(s)	84, 375, 396, 531
BshFI	GGCC	2 cut(s)	305, 552
BshNI	GGYRCC	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	2 cut(s)	158, 217
BsmI	GAATGC	2 cut(s)	61, 446
BsnI	GGCC	2 cut(s)	305, 552
Bso31I	GGTCTC	1 cut(s)	217
Bsp1407I	TGTACA	1 cut(s)	314
BspANI	GGCC	2 cut(s)	305, 552
BspCNI	CTCAG	4 cut(s)	83, 374, 395, 530
BspLI	GGNNCC	3 cut(s)	17, 395, 497
BspT107I	GGYRCC	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	4 cut(s)	239, 256, 565, 665
BstAUI	TGTACA	1 cut(s)	314
BstDEI	CTNAG	4 cut(s)	70, 361, 382, 517
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	158, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	531
BstV2I	GAAGAC	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	305, 552
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	4 cut(s)	67, 252, 315, 496
CviAII	CATG	4 cut(s)	11, 157, 199, 556
CviQI	GTAC	4 cut(s)	67, 252, 315, 496
DdeI	CTNAG	4 cut(s)	70, 361, 382, 517
DraIII	CACNNNGTG	1 cut(s)	241
EaeI	YGGCCR	2 cut(s)	303, 550
Eco31I	GGTCTC	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	531
EcoRV	GATATC	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	61
FaeI	CATG	4 cut(s)	14, 160, 202, 559
FaiI	YATR	9 cut(s)	12, 50, 158, 200, 248, 250, 452, 557, 656
FatI	CATG	4 cut(s)	10, 156, 198, 555
FauNDI	CATATG	1 cut(s)	248
FokI	GGATG	1 cut(s)	154
FspBI	CTAG	1 cut(s)	470
HaeIII	GGCC	2 cut(s)	305, 552
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	4 cut(s)	14, 160, 202, 559
HinfI	GANTC	4 cut(s)	151, 202, 513, 599
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	315, 661
Hpy188I	TCNGA	3 cut(s)	183, 385, 509
Hpy188III	TCNNGA	1 cut(s)	574
Hpy8I	GTNNAC	2 cut(s)	315, 661
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	4 cut(s)	239, 256, 565, 665
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	7 cut(s)	35, 59, 440, 446, 483, 504, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	4 cut(s)	70, 361, 382, 517
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	14, 160, 202, 559
KpnI	GGTACC	1 cut(s)	499
LmnI	GCTCC	4 cut(s)	7, 15, 399, 470
LpnPI	CCDG	5 cut(s)	48, 123, 219, 518, 545
LweI	GCATC	3 cut(s)	68, 83, 513
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	28, 256
MboII	GAAGA	3 cut(s)	364, 522, 571
MlsI	TGGCCA	2 cut(s)	305, 552
MluCI	AATT	3 cut(s)	132, 330, 398
MluNI	TGGCCA	2 cut(s)	305, 552
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	652
MnlI	CCTC	4 cut(s)	99, 139, 509, 668
Mox20I	TGGCCA	2 cut(s)	305, 552
Mph1103I	ATGCAT	1 cut(s)	61
MscI	TGGCCA	2 cut(s)	305, 552
MseI	TTAA	4 cut(s)	162, 267, 273, 615
MslI	CAYNNNNRTG	1 cut(s)	583
Msp20I	TGGCCA	2 cut(s)	305, 552
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	533
Mva1269I	GAATGC	2 cut(s)	61, 446
MvaI	CCWGG	1 cut(s)	533
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeI	CATATG	1 cut(s)	248
NlaIII	CATG	4 cut(s)	14, 160, 202, 559
NlaIV	GGNNCC	3 cut(s)	17, 395, 497
NmuCI	GTSAC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	61
PctI	GAATGC	2 cut(s)	61, 446
PfeI	GAWTC	3 cut(s)	202, 513, 599
PflMI	CCANNNNNTGG	1 cut(s)	241
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	531
PspN4I	GGNNCC	3 cut(s)	17, 395, 497
PspPI	GGNCC	1 cut(s)	427
RsaI	GTAC	4 cut(s)	68, 253, 316, 497
RsaNI	GTAC	4 cut(s)	67, 252, 315, 496
RseI	CAYNNNNRTG	1 cut(s)	583
SaqAI	TTAA	4 cut(s)	162, 267, 273, 615
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	533
SetI	ASST	7 cut(s)	87, 286, 343, 408, 501, 537, 607
SfaNI	GCATC	3 cut(s)	68, 83, 513
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	3 cut(s)	132, 330, 398
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	531
TaaI	ACNGT	4 cut(s)	239, 256, 565, 665
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	53, 77, 188
TasI	AATT	3 cut(s)	132, 330, 398
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	3 cut(s)	202, 513, 599
Tru1I	TTAA	4 cut(s)	162, 267, 273, 615
Tru9I	TTAA	4 cut(s)	162, 267, 273, 615
TseFI	GTSAC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	5 cut(s)	37, 158, 333, 439, 572
Van91I	CCANNNNNTGG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	330
XspI	CTAG	1 cut(s)	470
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.