Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Forward (+)

5364365 .. 5365283

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G005110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCCAACAATCAGCTTATGCCTCCCGCTCGCTTTGCTTTTGGTTTTGCTACAATTTTGACTGGCTTCCACTTCTCTGTTACTGCATTGGTTGGTTTCATATCGAATGCATCTGGGTACTCAGCATCGAAACATGTTCCTCTTTGGGAACTTAATTGGTTCTCACTTGTAGCCAATGCCTCAATTACGGGGATGAACTTGAGTCTCATGCTTAACTCTGTCGGCTTTTATCAGATATCGAAGTTGAGCATGATTCCGGTGGTCTCTGATTTCTCAAGGGAAGTCAAGATTGCTGTGGCAGTGGTGATAATACGTGTGGGCATATGTACCGTCACCGATGTTAAAGTTAATGCCAAAGGTTTTCTCTGTGCTTGTGTGGCCATCTTGTGTACATCATTACAACAAATTTCAATAGGTTCATTACAGAAGTCAGAAGATGAGAAGAAATACTCAGTAGGCTCTTTTGAATTGCTCAGAAAGACAGCTCCAATTCAAGCTATCTCCCTTCTCATTCTTGGTCCATTTGTTGTTTACTTTCTTACTGGAATACTTTTAACAGATTACAAGATGACGTCTGGTGCATTTGCATTCATAATGCTCTCTTGCTCCCTAGCAGTATTCTGCAATATCAGTCGGTACCTCTGCATCGGAAGATTCTCAGCCGTGTCATTCCAGGTTTTATTCATTTTAGGCCACATGAAGACTGTCTGTGTCTTGACATTGGGGTGGCTTCTCTTTGATTCAGCGCTCACATTTAAGAACTTGATGGGAATGGCTCTTGCAGTTGCTGAGAAGCAAACTAGGACATCCCTGCTAAGCACTCTCACAAAAGATCTGAAACCATTGAATGAGGGAATTGCGGAAATCCCATTGAATGGTGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

295

Amino Acids

31.99

Weight (kDa)

9.01

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	23 - 263	4.5e-09	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	575
Acc65I	GGTACC	1 cut(s)	636
AccB1I	GGYRCC	1 cut(s)	636
AccB7I	CCANNNNNTGG	1 cut(s)	875
AccBSI	CCGCTC	1 cut(s)	29
AciI	CCGC	2 cut(s)	27, 860
AcoI	YGGCCR	2 cut(s)	3, 378
AcsI	RAATTY	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	572
AfaI	GTAC	4 cut(s)	119, 328, 391, 638
AfeI	AGCGCT	1 cut(s)	747
AfiI	CCNNNNNNNGG	1 cut(s)	875
AflIII	ACRYGT	2 cut(s)	133, 313
AgsI	TTSAA	5 cut(s)	411, 467, 494, 847, 874
AjnI	CCWGG	1 cut(s)	672
AluBI	AGCT	3 cut(s)	16, 485, 497
AluI	AGCT	3 cut(s)	16, 485, 497
Alw26I	GTCTC	2 cut(s)	209, 268
AlwNI	CAGNNNCTG	1 cut(s)	788
Aor51HI	AGCGCT	1 cut(s)	747
AoxI	GGCC	3 cut(s)	3, 378, 691
ApoI	RAATTY	1 cut(s)	405
Asp718I	GGTACC	1 cut(s)	636
AspLEI	GCGC	1 cut(s)	748
AspS9I	GGNCC	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	316, 325
AvaII	GGWCC	1 cut(s)	518
BalI	TGGCCA	2 cut(s)	5, 380
BanI	GGYRCC	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	707
BccI	CCATC	2 cut(s)	389, 760
BceAI	ACGGC	1 cut(s)	647
BciT130I	CCWGG	1 cut(s)	674
BcoDI	GTCTC	2 cut(s)	209, 268
BfaI	CTAG	2 cut(s)	611, 801
BfoI	RGCGCY	1 cut(s)	749
BglII	AGATCT	1 cut(s)	832
BlpI	GCTNAGC	1 cut(s)	815
Bme1390I	CCNGG	1 cut(s)	674
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	1 cut(s)	638
BmrFI	CCNGG	1 cut(s)	674
BmsI	GCATC	4 cut(s)	119, 134, 654, 871
BpiI	GAAGAC	1 cut(s)	707
Bpu1102I	GCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	2 cut(s)	220, 259
BsaAI	YACGTR	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	572
BsaI	GGTCTC	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	875
Bse1I	ACTGG	2 cut(s)	67, 547
BseBI	CCWGG	1 cut(s)	674
BseGI	GGATG	2 cut(s)	198, 806
BseLI	CCNNNNNNNGG	1 cut(s)	875
BseMII	CTCAG	5 cut(s)	135, 465, 487, 672, 780
BseNI	ACTGG	2 cut(s)	67, 547
BshFI	GGCC	3 cut(s)	5, 380, 693
BshNI	GGYRCC	1 cut(s)	636
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	875
BsmAI	GTCTC	2 cut(s)	209, 268
BsmI	GAATGC	2 cut(s)	112, 587
BsnI	GGCC	3 cut(s)	5, 380, 693
Bso31I	GGTCTC	1 cut(s)	268
Bsp1407I	TGTACA	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	832
Bsp1720I	GCTNAGC	1 cut(s)	815
BspACI	CCGC	2 cut(s)	27, 860
BspANI	GGCC	3 cut(s)	5, 380, 693
BspCNI	CTCAG	5 cut(s)	134, 464, 486, 671, 781
BspLI	GGNNCC	1 cut(s)	638
BspT107I	GGYRCC	1 cut(s)	636
BspTNI	GGTCTC	1 cut(s)	268
BsrBI	CCGCTC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	67, 547
BssMI	GATC	1 cut(s)	832
BssNI	GRCGYC	1 cut(s)	572
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	2 cut(s)	331, 706
BstACI	GRCGYC	1 cut(s)	572
BstAUI	TGTACA	1 cut(s)	389
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	6 cut(s)	121, 451, 473, 658, 789, 815
BstF5I	GGATG	2 cut(s)	198, 806
BstH2I	RGCGCY	1 cut(s)	749
BstHHI	GCGC	1 cut(s)	748
BstKTI	GATC	1 cut(s)	835
BstMAI	GTCTC	2 cut(s)	209, 268
BstMBI	GATC	1 cut(s)	832
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 377
BstNI	CCWGG	1 cut(s)	674
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	672
BstV2I	GAAGAC	1 cut(s)	707
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
BsuRI	GGCC	3 cut(s)	5, 380, 693
BtsCI	GGATG	2 cut(s)	198, 806
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	31
CaiI	CAGNNNCTG	1 cut(s)	788
CfoI	GCGC	1 cut(s)	748
Cfr13I	GGNCC	1 cut(s)	518
Csp6I	GTAC	4 cut(s)	118, 327, 390, 637
CviAII	CATG	5 cut(s)	134, 208, 250, 697, 885
CviQI	GTAC	4 cut(s)	118, 327, 390, 637
DdeI	CTNAG	6 cut(s)	121, 451, 473, 658, 789, 815
DpnI	GATC	1 cut(s)	834
DpnII	GATC	1 cut(s)	832
EaeI	YGGCCR	2 cut(s)	3, 378
Eco31I	GGTCTC	1 cut(s)	268
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	518
Eco47III	AGCGCT	1 cut(s)	747
EcoRII	CCWGG	1 cut(s)	672
EcoRV	GATATC	1 cut(s)	237
EcoT22I	ATGCAT	2 cut(s)	112, 886
FaeI	CATG	5 cut(s)	137, 211, 253, 700, 888
FatI	CATG	5 cut(s)	133, 207, 249, 696, 884
FauI	CCCGC	1 cut(s)	34
FauNDI	CATATG	1 cut(s)	323
FokI	GGATG	2 cut(s)	205, 793
FspBI	CTAG	2 cut(s)	611, 801
GlaI	GCGC	1 cut(s)	747
HaeII	RGCGCY	1 cut(s)	749
HaeIII	GGCC	3 cut(s)	5, 380, 693
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	1 cut(s)	748
Hin1I	GRCGYC	1 cut(s)	572
Hin1II	CATG	5 cut(s)	137, 211, 253, 700, 888
Hin6I	GCGC	1 cut(s)	746
HinP1I	GCGC	1 cut(s)	746
HinfI	GANTC	4 cut(s)	202, 253, 654, 740
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	2 cut(s)	316, 325
Hpy166II	GTNNAC	2 cut(s)	390, 532
Hpy188I	TCNGA	6 cut(s)	234, 268, 433, 476, 650, 837
Hpy188III	TCNNGA	2 cut(s)	286, 715
Hpy8I	GTNNAC	2 cut(s)	390, 532
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	2 cut(s)	331, 706
HpyCH4IV	ACGT	2 cut(s)	313, 572
HpyCH4V	TGCA	8 cut(s)	86, 110, 581, 587, 624, 645, 782, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 377
HpyF3I	CTNAG	6 cut(s)	121, 451, 473, 658, 789, 815
HpySE526I	ACGT	2 cut(s)	313, 572
Hsp92I	GRCGYC	1 cut(s)	572
Hsp92II	CATG	5 cut(s)	137, 211, 253, 700, 888
HspAI	GCGC	1 cut(s)	746
KpnI	GGTACC	1 cut(s)	640
Kzo9I	GATC	1 cut(s)	832
LmnI	GCTCC	2 cut(s)	490, 611
LpnPI	CCDG	8 cut(s)	48, 99, 270, 528, 561, 659, 686, 824
LweI	GCATC	4 cut(s)	119, 134, 654, 871
MaeI	CTAG	2 cut(s)	611, 801
MaeII	ACGT	2 cut(s)	313, 572
MaeIII	GTNAC	2 cut(s)	79, 331
MalI	GATC	1 cut(s)	834
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	1 cut(s)	832
MboII	GAAGA	4 cut(s)	446, 454, 663, 712
MflI	RGATCY	1 cut(s)	832
MlsI	TGGCCA	2 cut(s)	5, 380
MluCI	AATT	7 cut(s)	54, 154, 183, 405, 467, 489, 855
MluNI	TGGCCA	2 cut(s)	5, 380
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	5 cut(s)	33, 150, 190, 650, 844
Mox20I	TGGCCA	2 cut(s)	5, 380
Mph1103I	ATGCAT	2 cut(s)	112, 886
MscI	TGGCCA	2 cut(s)	5, 380
MseI	TTAA	6 cut(s)	153, 213, 342, 348, 554, 756
MslI	CAYNNNNRTG	1 cut(s)	724
Msp20I	TGGCCA	2 cut(s)	5, 380
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	674
Mva1269I	GAATGC	2 cut(s)	112, 587
MvaI	CCWGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	2 cut(s)	35, 377
NdeI	CATATG	1 cut(s)	323
NdeII	GATC	1 cut(s)	832
NlaIII	CATG	5 cut(s)	137, 211, 253, 700, 888
NlaIV	GGNNCC	1 cut(s)	638
NmuCI	GTSAC	1 cut(s)	331
NsiI	ATGCAT	2 cut(s)	112, 886
NspI	RCATGY	1 cut(s)	137
PciI	ACATGT	1 cut(s)	133
PctI	GAATGC	2 cut(s)	112, 587
PfeI	GAWTC	3 cut(s)	253, 654, 740
PflMI	CCANNNNNTGG	1 cut(s)	875
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Ppu21I	YACGTR	1 cut(s)	314
PscI	ACATGT	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	672
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	638
PspPI	GGNCC	1 cut(s)	518
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	4 cut(s)	119, 328, 391, 638
RsaNI	GTAC	4 cut(s)	118, 327, 390, 637
RseI	CAYNNNNRTG	1 cut(s)	724
SaqAI	TTAA	6 cut(s)	153, 213, 342, 348, 554, 756
Sau3AI	GATC	1 cut(s)	832
Sau96I	GGNCC	1 cut(s)	518
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	674
SetI	ASST	9 cut(s)	18, 316, 361, 418, 487, 499, 575, 642, 678
SfaNI	GCATC	4 cut(s)	119, 134, 654, 871
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	724
SmlI	CTYRAG	2 cut(s)	199, 274
SmoI	CTYRAG	2 cut(s)	199, 274
Sse9I	AATT	7 cut(s)	54, 154, 183, 405, 467, 489, 855
SsiI	CCGC	2 cut(s)	27, 860
SspMI	CTAG	2 cut(s)	611, 801
StyD4I	CCNGG	1 cut(s)	672
TaaI	ACNGT	2 cut(s)	331, 706
TaiI	ACGT	2 cut(s)	316, 575
TaqI	TCGA	3 cut(s)	104, 128, 239
TasI	AATT	7 cut(s)	54, 154, 183, 405, 467, 489, 855
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	253, 654, 740
Tru1I	TTAA	6 cut(s)	153, 213, 342, 348, 554, 756
Tru9I	TTAA	6 cut(s)	153, 213, 342, 348, 554, 756
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	6 cut(s)	88, 209, 408, 580, 673, 713
TspRI	CASTG	1 cut(s)	306
Van91I	CCANNNNNTGG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	2 cut(s)	611, 801
ZraI	GACGTC	1 cut(s)	573
Zsp2I	ATGCAT	2 cut(s)	112, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.