Rorug07G0172000

UDP-galactose transporter 2-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
14010151 .. 14049339
39189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0172000.1

Sequence Viewer

Length: 1512 bp
ATGGAGTTGGATAGCATTCTAGGATATCTGGAGAGCAAGACCATCTTAGTTACTGGAGCCACTGGCTTACTAGGAATGGTATTTGTGGAGAAGATACTAAGGGTTCAACCAAATATTGGAAAGCTCTACCTTCTTATAAGAGCTTCTGATGCCAACTCTGCCACACATCGCATGCGCAATGAGATTATAGAGAAAGAGTTATTTAGGGTTCTTAGAGAAAAATGGGGCACAGATTTTGAATCCTTCATTTCAAAAAAAGTAGTTGCTATTTCGGGGGACGTAGCTTCTGCAGAACTAGGAGTGAAAGGATTTGAATTGAGGGAACGTATGTGCAATGAAATACAAATTATACTTCATTCTGCAGCAACCGTGGATTTTAATGACAGGTATGATATTGCTTTGGATGTGAATACATTTGGGGTTCTGCATGTGTTGAGCTTTGCGAAGAAGTGTTTGAAACTAGAAATGCTTGTTCACATATCAACTGCTTATGTGGGCGTCGGAAGGATTGGGCTTATACTGGAGGACTCCTCTCCAATGGATGAGTTGAGAAAGGAAATCACTAAATCTGACTTGAAAGTACTGGAAAGGAACATGGTGGTGGAAAAATTAAATGAACTAAAAGCACAAAATGCTTCAGAAAAAGTTATTACGAATAAGATGAAGGACTTGGGCTTTGCAAGGTCAAAGTTGTATGGTTGGCCAAGTACTTATTTGTTTACAAAAGCGATGGCAGAAGTGTATCTTGAACAATCAAAAGGTAATTTACCCATTACCATCATACGCACAGCTACAGTTACGAGCACTTACAAGGAACCATTTCCAGGTTGGCTTCAAGGTTACAGAACCGTTGATAGCCTAATTGGTACTTTTTGGAAGGGGGCACTGACATGTTTGCCTATGGATCCTACAGCTGTATTGGATTTGATTCCAGTTGATATGGTGGCCAATTCAATAATTACGGCGATGGTAGTGAATGCCAACAAATATCTTGAAAATCCTGGAATGATTTATCATGTGGGAACGTCCTTGAGAAATCCAATTAAAATGTCTGAGTGGACAAATTTTATGTTCCAATACTGCACCAAAAATCCATGGCTTTATAAGGATGGAATCCCGATCAAGGTTGAGAAGTTGAAAATGTTCACAACTATGGCTGCATTTCGCTCGTACATGCAAATCCGCTACATGTTACCATTGGAGGTATTAAAGTTCTTGAATAAAGAATTTGACCAATATTTTCAAGAATTATATGCCAACTATAACCGAAAAATCACATTTGCGATGCGGTTGGCTGAGATATACCGACCATTTACGCTATATAAGGGCATCTTTGACGACACCAATTTGGAGAAGTTGCGAAGGATAGCAACAGAAAATTACAGAGACGCTGAAATTTTTAATTTTGATCCAAGATGCATTGATTGGGAAGACTACTTGATGCGTACTCACATCCCTGGCCTTCGGAAACATGTTATGATCAAACATAGCCAGAGCCAGAGCCGACTTTGA

Protein Analysis

503

Amino Acids

57.98

Weight (kDa)

8.93

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_4 PF07993 17 - 319 7.4e-68 Male sterility protein
Sterile PF03015 396 - 493 4.9e-17 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 137, 1104
Acc16I TGCGCA 1 cut(s) 176
AccB7I CCANNNNNTGG 1 cut(s) 116
AciI CCGC 2 cut(s) 1183, 1288
AclWI GGATC 3 cut(s) 899, 912, 1403
AcoI YGGCCR 2 cut(s) 701, 945
AcsI RAATTY 3 cut(s) 1063, 1226, 1395
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 5 cut(s) 582, 709, 868, 1172, 1447
AfiI CCNNNNNNNGG 3 cut(s) 116, 824, 1123
AflIII ACRYGT 3 cut(s) 890, 1188, 1471
AjnI CCWGG 3 cut(s) 823, 1000, 1456
AluBI AGCT 6 cut(s) 124, 143, 284, 438, 791, 914
AluI AGCT 6 cut(s) 124, 143, 284, 438, 791, 914
Alw21I GWGCWC 1 cut(s) 806
Alw26I GTCTC 1 cut(s) 1380
AlwI GGATC 3 cut(s) 899, 912, 1403
AoxI GGCC 3 cut(s) 701, 945, 1459
ApeKI GCWGC 2 cut(s) 362, 1157
ApoI RAATTY 3 cut(s) 1063, 1226, 1395
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
Asp700I GAANNNNTTC 2 cut(s) 819, 1142
AspLEI GCGC 1 cut(s) 177
BaeGI GKGCMC 2 cut(s) 230, 886
BalI TGGCCA 2 cut(s) 703, 947
BamHI GGATCC 1 cut(s) 904
BbsI GAAGAC 1 cut(s) 1437
Bbv12I GWGCWC 1 cut(s) 806
BbvI GCAGC 2 cut(s) 374, 1144
BccI CCATC 5 cut(s) 50, 724, 785, 961, 1103
BceAI ACGGC 1 cut(s) 978
BcgI CGANNNNNNTGC 2 cut(s) 1149, 1183
BciT130I CCWGG 3 cut(s) 825, 1002, 1458
BclI TGATCA 1 cut(s) 1479
BcoDI GTCTC 1 cut(s) 1380
BfaI CTAG 4 cut(s) 20, 71, 296, 461
BfmI CTRYAG 4 cut(s) 288, 360, 792, 909
BisI GCNGC 2 cut(s) 363, 1158
BlsI GCNGC 2 cut(s) 364, 1159
BmcAI AGTACT 2 cut(s) 582, 709
Bme1390I CCNGG 3 cut(s) 825, 1002, 1458
BmiI GGNNCC 3 cut(s) 58, 816, 906
BmrFI CCNGG 3 cut(s) 825, 1002, 1458
BmsI GCATC 5 cut(s) 139, 1275, 1338, 1406, 1431
BpiI GAAGAC 1 cut(s) 1437
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpmI CTGGAG 3 cut(s) 50, 75, 542
BpuEI CTTGAG 1 cut(s) 1051
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 369, 1094, 1456
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 824, 1123
Bse1I ACTGG 5 cut(s) 58, 67, 525, 588, 932
Bse3DI GCAATG 2 cut(s) 184, 340
BseBI CCWGG 3 cut(s) 825, 1002, 1458
BseDI CCNNGG 3 cut(s) 369, 1094, 1456
BseGI GGATG 4 cut(s) 409, 547, 1114, 1452
BseLI CCNNNNNNNGG 3 cut(s) 116, 824, 1123
BseMI GCAATG 2 cut(s) 184, 340
BseMII CTCAG 2 cut(s) 1044, 1287
BseNI ACTGG 5 cut(s) 58, 67, 525, 588, 932
BseRI GAGGAG 1 cut(s) 520
BseSI GKGCMC 2 cut(s) 230, 886
BseXI GCAGC 2 cut(s) 374, 1144
BsgI GTGCAG 1 cut(s) 1066
BshFI GGCC 3 cut(s) 703, 947, 1461
BsiHKAI GWGCWC 1 cut(s) 806
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 3 cut(s) 116, 824, 1123
BsmAI GTCTC 1 cut(s) 1380
BsmBI CGTCTC 1 cut(s) 1380
BsmFI GGGAC 1 cut(s) 290
BsmI GAATGC 2 cut(s) 15, 982
BsnI GGCC 3 cut(s) 703, 947, 1461
Bsp1286I GDGCHC 3 cut(s) 230, 806, 886
Bsp143I GATC 4 cut(s) 904, 1119, 1408, 1479
Bsp19I CCATGG 1 cut(s) 1094
BspACI CCGC 2 cut(s) 1183, 1288
BspANI GGCC 3 cut(s) 703, 947, 1461
BspCNI CTCAG 2 cut(s) 1045, 1288
BspLI GGNNCC 3 cut(s) 58, 816, 906
BspMAI CTGCAG 2 cut(s) 292, 364
BspPI GGATC 3 cut(s) 899, 912, 1403
BsrDI GCAATG 2 cut(s) 184, 340
BsrI ACTGG 5 cut(s) 58, 67, 525, 588, 932
BssECI CCNNGG 3 cut(s) 369, 1094, 1456
BssMI GATC 4 cut(s) 904, 1119, 1408, 1479
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 1094
Bst2UI CCWGG 3 cut(s) 825, 1002, 1458
Bst4CI ACNGT 3 cut(s) 370, 796, 850
BstACI GRCGYC 1 cut(s) 498
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 5 cut(s) 46, 98, 212, 1053, 1296
BstDSI CCRYGG 2 cut(s) 369, 1094
BstF5I GGATG 4 cut(s) 409, 547, 1114, 1452
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 4 cut(s) 907, 1122, 1411, 1482
BstMAI GTCTC 1 cut(s) 1380
BstMBI GATC 4 cut(s) 904, 1119, 1408, 1479
BstMWI GCNNNNNNNGC 3 cut(s) 149, 158, 632
BstNI CCWGG 3 cut(s) 825, 1002, 1458
BstNSI RCATGY 6 cut(s) 175, 431, 894, 1177, 1192, 1475
BstSCI CCNGG 3 cut(s) 823, 1000, 1456
BstSFI CTRYAG 4 cut(s) 288, 360, 792, 909
BstSLI GKGCMC 2 cut(s) 230, 886
BstV1I GCAGC 2 cut(s) 374, 1144
BstV2I GAAGAC 1 cut(s) 1437
BstX2I RGATCY 1 cut(s) 904
BstYI RGATCY 1 cut(s) 904
BsuRI GGCC 3 cut(s) 703, 947, 1461
BtgI CCRYGG 2 cut(s) 369, 1094
BtgZI GCGATG 4 cut(s) 152, 743, 980, 1298
BtsCI GGATG 4 cut(s) 409, 547, 1114, 1452
BtsIMutI CAGTG 2 cut(s) 60, 884
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 177
CseI GACGC 2 cut(s) 487, 1397
Csp6I GTAC 5 cut(s) 581, 708, 867, 1171, 1446
CviAII CATG 9 cut(s) 172, 428, 595, 891, 1016, 1095, 1174, 1189, 1472
CviQI GTAC 5 cut(s) 581, 708, 867, 1171, 1446
DdeI CTNAG 5 cut(s) 46, 98, 212, 1053, 1296
DpnI GATC 4 cut(s) 906, 1121, 1410, 1481
DpnII GATC 4 cut(s) 904, 1119, 1408, 1479
EaeI YGGCCR 2 cut(s) 701, 945
Eco130I CCWWGG 1 cut(s) 1094
Eco32I GATATC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 621
EcoRII CCWGG 3 cut(s) 823, 1000, 1456
EcoRV GATATC 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 1094
EcoT22I ATGCAT 1 cut(s) 1421
ErhI CCWWGG 1 cut(s) 1094
Esp3I CGTCTC 1 cut(s) 1380
FaeI CATG 9 cut(s) 175, 431, 598, 894, 1019, 1098, 1177, 1192, 1475
FalI AAGNNNNNCTT 6 cut(s) 29, 61, 729, 761, 1316, 1348
FaqI GGGAC 1 cut(s) 290
FatI CATG 9 cut(s) 171, 427, 594, 890, 1015, 1094, 1173, 1188, 1471
FbaI TGATCA 1 cut(s) 1479
Fnu4HI GCNGC 2 cut(s) 363, 1158
FokI GGATG 4 cut(s) 416, 554, 1121, 1439
Fsp4HI GCNGC 2 cut(s) 363, 1158
FspBI CTAG 4 cut(s) 20, 71, 296, 461
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 1 cut(s) 176
GluI GCNGC 2 cut(s) 363, 1158
GsuI CTGGAG 3 cut(s) 50, 75, 542
HaeIII GGCC 3 cut(s) 703, 947, 1461
HgaI GACGC 2 cut(s) 487, 1397
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 9 cut(s) 175, 431, 598, 894, 1019, 1098, 1177, 1192, 1475
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HinfI GANTC 4 cut(s) 239, 527, 928, 1113
Hpy166II GTNNAC 4 cut(s) 475, 720, 1059, 1146
Hpy188I TCNGA 6 cut(s) 148, 503, 571, 640, 1054, 1467
Hpy188III TCNNGA 6 cut(s) 29, 746, 992, 1117, 1216, 1244
Hpy8I GTNNAC 4 cut(s) 475, 720, 1059, 1146
Hpy99I CGWCG 1 cut(s) 503
HpyAV CCTTC 7 cut(s) 140, 253, 498, 658, 871, 1356, 1472
HpyCH4III ACNGT 3 cut(s) 370, 796, 850
HpyCH4IV ACGT 3 cut(s) 279, 325, 1025
HpyCH4V TGCA 9 cut(s) 290, 333, 362, 427, 680, 1083, 1160, 1177, 1419
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 158, 632
HpyF3I CTNAG 5 cut(s) 46, 98, 212, 1053, 1296
HpySE526I ACGT 3 cut(s) 279, 325, 1025
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 9 cut(s) 175, 431, 598, 894, 1019, 1098, 1177, 1192, 1475
HspAI GCGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 1479
Kzo9I GATC 4 cut(s) 904, 1119, 1408, 1479
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 2 cut(s) 374, 1144
LweI GCATC 5 cut(s) 139, 1275, 1338, 1406, 1431
MaeI CTAG 4 cut(s) 20, 71, 296, 461
MaeII ACGT 3 cut(s) 279, 325, 1025
MaeIII GTNAC 4 cut(s) 49, 796, 839, 1191
MalI GATC 4 cut(s) 906, 1121, 1410, 1481
MboI GATC 4 cut(s) 904, 1119, 1408, 1479
MboII GAAGA 3 cut(s) 103, 457, 1442
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 3 cut(s) 230, 806, 886
MlsI TGGCCA 2 cut(s) 703, 947
MluNI TGGCCA 2 cut(s) 703, 947
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 4 cut(s) 312, 517, 541, 1195
Mox20I TGGCCA 2 cut(s) 703, 947
Mph1103I ATGCAT 1 cut(s) 1421
MroXI GAANNNNTTC 2 cut(s) 819, 1142
MscI TGGCCA 2 cut(s) 703, 947
MseI TTAA 5 cut(s) 378, 611, 1044, 1208, 1401
MslI CAYNNNNRTG 3 cut(s) 599, 889, 1151
Msp20I TGGCCA 2 cut(s) 703, 947
MspA1I CMGCKG 1 cut(s) 914
MspR9I CCNGG 3 cut(s) 825, 1002, 1458
Mva1269I GAATGC 2 cut(s) 15, 982
MvaI CCWGG 3 cut(s) 825, 1002, 1458
MwoI GCNNNNNNNGC 3 cut(s) 149, 158, 632
NcoI CCATGG 1 cut(s) 1094
NdeII GATC 4 cut(s) 904, 1119, 1408, 1479
NlaIII CATG 9 cut(s) 175, 431, 598, 894, 1019, 1098, 1177, 1192, 1475
NlaIV GGNNCC 3 cut(s) 58, 816, 906
NsbI TGCGCA 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 1421
NspI RCATGY 6 cut(s) 175, 431, 894, 1177, 1192, 1475
PaeI GCATGC 1 cut(s) 175
PciI ACATGT 3 cut(s) 890, 1188, 1471
PctI GAATGC 2 cut(s) 15, 982
PdmI GAANNNNTTC 2 cut(s) 819, 1142
PfeI GAWTC 3 cut(s) 239, 928, 1113
PflMI CCANNNNNTGG 1 cut(s) 116
PfoI TCCNGGA 1 cut(s) 1000
PkrI GCNGC 2 cut(s) 364, 1159
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PscI ACATGT 3 cut(s) 890, 1188, 1471
PsiI TTATAA 2 cut(s) 137, 1104
Psp6I CCWGG 3 cut(s) 823, 1000, 1456
PspGI CCWGG 3 cut(s) 823, 1000, 1456
PspN4I GGNNCC 3 cut(s) 58, 816, 906
PstI CTGCAG 2 cut(s) 292, 364
PsuI RGATCY 1 cut(s) 904
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 5 cut(s) 582, 709, 868, 1172, 1447
RsaNI GTAC 5 cut(s) 581, 708, 867, 1171, 1446
RseI CAYNNNNRTG 3 cut(s) 599, 889, 1151
SaqAI TTAA 5 cut(s) 378, 611, 1044, 1208, 1401
SatI GCNGC 2 cut(s) 363, 1158
Sau3AI GATC 4 cut(s) 904, 1119, 1408, 1479
ScaI AGTACT 2 cut(s) 582, 709
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 3 cut(s) 825, 1002, 1458
SduI GDGCHC 3 cut(s) 230, 806, 886
SfaNI GCATC 5 cut(s) 139, 1275, 1338, 1406, 1431
SfcI CTRYAG 4 cut(s) 288, 360, 792, 909
SmiMI CAYNNNNRTG 3 cut(s) 599, 889, 1151
SmlI CTYRAG 1 cut(s) 1030
SmoI CTYRAG 1 cut(s) 1030
SphI GCATGC 1 cut(s) 175
SsiI CCGC 2 cut(s) 1183, 1288
SspI AATATT 2 cut(s) 115, 1238
SspMI CTAG 4 cut(s) 20, 71, 296, 461
StyD4I CCNGG 3 cut(s) 823, 1000, 1456
StyI CCWWGG 1 cut(s) 1094
TaaI ACNGT 3 cut(s) 370, 796, 850
TaiI ACGT 3 cut(s) 282, 328, 1028
TatI WGTACW 2 cut(s) 580, 707
TfiI GAWTC 3 cut(s) 239, 928, 1113
Tru1I TTAA 5 cut(s) 378, 611, 1044, 1208, 1401
Tru9I TTAA 5 cut(s) 378, 611, 1044, 1208, 1401
TscAI CASTG 2 cut(s) 67, 891
TseI GCWGC 2 cut(s) 362, 1157
TspDTI ATGAA 5 cut(s) 235, 344, 351, 630, 677
TspRI CASTG 2 cut(s) 67, 891
Van91I CCANNNNNTGG 1 cut(s) 116
XapI RAATTY 3 cut(s) 1063, 1226, 1395
XceI RCATGY 6 cut(s) 175, 431, 894, 1177, 1192, 1475
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XmnI GAANNNNTTC 2 cut(s) 819, 1142
XspI CTAG 4 cut(s) 20, 71, 296, 461
ZrmI AGTACT 2 cut(s) 582, 709
Zsp2I ATGCAT 1 cut(s) 1421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.