Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Forward (+)

5410255 .. 5411196

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G005150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAATATTGTGAGCTCCATTGGCATTATCATGGCCAACAAGCAGCATATCCACTTCTCTGTTACTGCATTGGTTGGTTTCATATCGAATGCATCTGGGTACTCAGCATCGAAACATGTTCCTCTTTGGGAACTTATTTGGTTCTCACTTGTAGCCAATGCCTCAATTACAGGGATGAACTTGAGTCTCATGCTTAACTCTGTCGGCTTTTATCAGATATCGAAGTCCGGTGGTCTCTGTGATGGAGTACATGTTGGCATATGTACCGTCACCGATGTTAAAGTTAATGCCAAAGGTTTTCTCTGTGCTTCTGTGGCCATCTTGTGTACATCATTACAGCAATTTTCAATAGCCCCAAATCAAGCTATCTCCCTTCTCATTCTTGGTCCATTTGTTGTTTACTTTCTTACTGGAAAACTTTTAACAGATTTCAAGATGACGTCTGCGGTATTCTGCAACATCAGTCGGTACCTCTGCATGGAAGATTCTCAGCCACTGTGTGTCTTGACATTGGGGTGGCTTCTCTTTGATTCAGCGCTCACATTTAAGAACTTGATGGGAATGGCTCCTGCAGTTGCTGAGAAGCAAACTAGGACATCCCTGCTAAGCACTCTCACAAAAGATCTGAAACCATTGAATGAGGGAATTGCGGAAATCCTATTGAATGGTGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

225

Amino Acids

24.18

Weight (kDa)

7.58

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	443
Acc65I	GGTACC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	468
AciI	CCGC	2 cut(s)	446, 650
AcoI	YGGCCR	2 cut(s)	33, 315
AcyI	GRCGYC	1 cut(s)	440
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	5 cut(s)	101, 249, 265, 328, 470
AfeI	AGCGCT	1 cut(s)	537
AfiI	CCNNNNNNNGG	1 cut(s)	478
AflIII	ACRYGT	2 cut(s)	115, 250
AgsI	TTSAA	4 cut(s)	348, 433, 637, 664
AluBI	AGCT	2 cut(s)	15, 365
AluI	AGCT	2 cut(s)	15, 365
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	191, 239
AlwNI	CAGNNNCTG	2 cut(s)	496, 578
Aor51HI	AGCGCT	1 cut(s)	537
AoxI	GGCC	2 cut(s)	33, 315
ApeKI	GCWGC	1 cut(s)	43
Asp718I	GGTACC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	386
BalI	TGGCCA	2 cut(s)	35, 317
BanI	GGYRCC	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	3 cut(s)	236, 326, 550
BcoDI	GTCTC	2 cut(s)	191, 239
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	539
BglII	AGATCT	1 cut(s)	622
BisI	GCNGC	1 cut(s)	44
BlpI	GCTNAGC	1 cut(s)	605
BlsI	GCNGC	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	470, 567
BmsI	GCATC	3 cut(s)	101, 116, 661
Bpu1102I	GCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse1I	ACTGG	1 cut(s)	415
BseGI	GGATG	2 cut(s)	180, 596
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMII	CTCAG	3 cut(s)	117, 503, 570
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	35, 317
BshNI	GGYRCC	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	2 cut(s)	191, 239
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	35, 317
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	622
Bsp1720I	GCTNAGC	1 cut(s)	605
BspACI	CCGC	2 cut(s)	446, 650
BspANI	GGCC	2 cut(s)	35, 317
BspCNI	CTCAG	3 cut(s)	116, 502, 571
BspLI	GGNNCC	2 cut(s)	470, 567
BspMAI	CTGCAG	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	415
BssMI	GATC	1 cut(s)	622
BssNI	GRCGYC	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	268, 498
BstACI	GRCGYC	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	326
BstDEI	CTNAG	4 cut(s)	103, 489, 579, 605
BstF5I	GGATG	2 cut(s)	180, 596
BstH2I	RGCGCY	1 cut(s)	539
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	2 cut(s)	191, 239
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 314
BstNSI	RCATGY	2 cut(s)	119, 254
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	35, 317
BtsCI	GGATG	2 cut(s)	180, 596
BtsIMutI	CAGTG	1 cut(s)	494
CaiI	CAGNNNCTG	2 cut(s)	496, 578
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	5 cut(s)	100, 248, 264, 327, 469
CviAII	CATG	6 cut(s)	31, 116, 190, 251, 478, 675
CviQI	GTAC	5 cut(s)	100, 248, 264, 327, 469
DdeI	CTNAG	4 cut(s)	103, 489, 579, 605
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
DraIII	CACNNNGTG	1 cut(s)	500
EaeI	YGGCCR	2 cut(s)	33, 315
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	386
Eco47III	AGCGCT	1 cut(s)	537
Eco53kI	GAGCTC	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	219
EcoT22I	ATGCAT	2 cut(s)	94, 676
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	6 cut(s)	34, 119, 193, 254, 481, 678
FatI	CATG	6 cut(s)	30, 115, 189, 250, 477, 674
FauNDI	CATATG	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	2 cut(s)	187, 583
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	539
HaeIII	GGCC	2 cut(s)	35, 317
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	538
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	6 cut(s)	34, 119, 193, 254, 481, 678
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HinfI	GANTC	3 cut(s)	184, 485, 530
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	327, 400
Hpy188I	TCNGA	2 cut(s)	216, 627
Hpy188III	TCNNGA	2 cut(s)	433, 505
Hpy8I	GTNNAC	2 cut(s)	327, 400
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	2 cut(s)	268, 498
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	6 cut(s)	68, 92, 456, 477, 572, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 314
HpyF3I	CTNAG	4 cut(s)	103, 489, 579, 605
HpySE526I	ACGT	1 cut(s)	440
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	6 cut(s)	34, 119, 193, 254, 481, 678
HspAI	GCGC	1 cut(s)	536
KpnI	GGTACC	1 cut(s)	472
Kzo9I	GATC	1 cut(s)	622
LmnI	GCTCC	2 cut(s)	20, 571
LpnPI	CCDG	6 cut(s)	81, 156, 241, 396, 582, 614
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	3 cut(s)	101, 116, 661
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	61, 268
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	1 cut(s)	494
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	17
MlsI	TGGCCA	2 cut(s)	35, 317
MluCI	AATT	3 cut(s)	165, 341, 645
MluNI	TGGCCA	2 cut(s)	35, 317
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	4 cut(s)	132, 172, 482, 634
Mox20I	TGGCCA	2 cut(s)	35, 317
Mph1103I	ATGCAT	2 cut(s)	94, 676
MscI	TGGCCA	2 cut(s)	35, 317
MseI	TTAA	5 cut(s)	195, 279, 285, 422, 546
MslI	CAYNNNNRTG	2 cut(s)	29, 514
Msp20I	TGGCCA	2 cut(s)	35, 317
MspI	CCGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	21, 314
NdeI	CATATG	1 cut(s)	260
NdeII	GATC	1 cut(s)	622
NlaIII	CATG	6 cut(s)	34, 119, 193, 254, 481, 678
NlaIV	GGNNCC	2 cut(s)	470, 567
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	2 cut(s)	94, 676
NspI	RCATGY	2 cut(s)	119, 254
PciI	ACATGT	2 cut(s)	115, 250
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	485, 530
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PscI	ACATGT	2 cut(s)	115, 250
Psp124BI	GAGCTC	1 cut(s)	17
PspN4I	GGNNCC	2 cut(s)	470, 567
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	2 cut(s)	496, 578
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	5 cut(s)	101, 249, 265, 328, 470
RsaNI	GTAC	5 cut(s)	100, 248, 264, 327, 469
RseI	CAYNNNNRTG	2 cut(s)	29, 514
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	5 cut(s)	195, 279, 285, 422, 546
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	622
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	5 cut(s)	17, 298, 367, 443, 474
SfaNI	GCATC	3 cut(s)	101, 116, 661
SfcI	CTRYAG	1 cut(s)	570
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	2 cut(s)	29, 514
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	3 cut(s)	165, 341, 645
SsiI	CCGC	2 cut(s)	446, 650
SspI	AATATT	1 cut(s)	7
SspMI	CTAG	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	268, 498
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	3 cut(s)	86, 110, 221
TasI	AATT	3 cut(s)	165, 341, 645
TatI	WGTACW	2 cut(s)	247, 326
TfiI	GAWTC	2 cut(s)	485, 530
Tru1I	TTAA	5 cut(s)	195, 279, 285, 422, 546
Tru9I	TTAA	5 cut(s)	195, 279, 285, 422, 546
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	3 cut(s)	17, 70, 191
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	386
XceI	RCATGY	2 cut(s)	119, 254
XspI	CTAG	1 cut(s)	591
ZraI	GACGTC	1 cut(s)	441
Zsp2I	ATGCAT	2 cut(s)	94, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.