Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

18286063 .. 18288882

Gene Structure 2820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G184000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGAAGAAGAAGTCCTCAGTGTCTGATGTAGGAGCGTGGGGCATGAATATTGTGAGCTCTGTGGGAATTATCATGGCCAACAAGCAGCTCATGTCCCCCCATGGCTTTGGCTTTGGCTTTGCTACAACTTTGACTGGCTTCCATTTTTCTGTTACTGCATTGGTTGGTTTGGTGTCAAATGCCACTGGCTACTCTGCTTCAAAGCATGTTCCTTTGTGGGAACTTGTTTGGTTCTCACTTGTAGCCAATGCCTCAATCACTGGGATGAACTTGAGCCTCATGCTTAACTCTGTTGGATTTTATCAGATATCGAAGTTGAGCATGATTCCCGTGGTATGTGTGCTGGAATGGATTCTTCATGGAAAACATTTTGCAAGGGAAGTCAAGTTGGCTGTGGGAGTGGTGGTTGTAGGTGTGGGAATATGTACAGTGACTGACGTGAAAGTTAATGCCAAAGGTTTCCTCTGTGCTTGTGTGGCTATCTTGTGTACATCCTTGCAACAAATTTCAATAGGTTCCTTGCAGAAGAAGTATTCGATAGGCTCTTTTGAATTGCTCAGCAAGACAGCTCCAATACAAGCTCTCTCCCTTCTTGTTTTTGGTCCGTTCTTCGATTATTATCTTACTGGAAAAGTTCTATTGGAGTATAAGTTGTCTTCTAGTGCACTTTTTTTCATACTACTCTCCTGCTCCTTAGCAGTTTTCTGCAACATCAGCCAGTACCTCTGCATCGGACGCTTCTCAGCTGTCTCATTCCAGGTTTTAGGTCACATGAAAACAGTGTGTATCCTGACGTTGGGGTGGCTACTCTTTGATTCGGAGCTCACACTGAAAAACTTGCTTGGAATGGCTCTTGCTGTTCTTGGCATGGTAGTATACAGTTGGGCTGTGGAGCAACCCAAGACCCTCCCTATTACAAGAGACAGTCTGTCAGAAGACGATCTGAAACCATTGAAGGAGGGAATGACAGAGAGTCCATCAAACGACGCGGAGCTTTGTGAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

337

Amino Acids

36.35

Weight (kDa)

7.99

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	879
AccII	CGCG	1 cut(s)	992
AciI	CCGC	1 cut(s)	992
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	507
AfaI	GTAC	3 cut(s)	430, 493, 725
AfiI	CCNNNNNNNGG	1 cut(s)	799
AgsI	TTSAA	4 cut(s)	204, 513, 554, 958
AhdI	GACNNNNNGTC	2 cut(s)	931, 975
AjiI	CACGTC	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	759
AluBI	AGCT	7 cut(s)	60, 91, 572, 584, 749, 826, 997
AluI	AGCT	7 cut(s)	60, 91, 572, 584, 749, 826, 997
Alw21I	GWGCWC	3 cut(s)	62, 670, 828
Alw26I	GTCTC	2 cut(s)	757, 918
Alw44I	GTGCAC	1 cut(s)	666
AlwNI	CAGNNNCTG	2 cut(s)	26, 437
AoxI	GGCC	1 cut(s)	78
ApaLI	GTGCAC	1 cut(s)	666
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	507
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	605
BaeGI	GKGCMC	1 cut(s)	670
BalI	TGGCCA	1 cut(s)	80
BanII	GRGCYC	2 cut(s)	62, 828
BbsI	GAAGAC	2 cut(s)	651, 945
Bbv12I	GWGCWC	3 cut(s)	62, 670, 828
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	988
BciT130I	CCWGG	1 cut(s)	761
BciVI	GTATCC	1 cut(s)	800
BcoDI	GTCTC	2 cut(s)	757, 918
BfaI	CTAG	1 cut(s)	663
BfuI	GTATCC	1 cut(s)	800
BisI	GCNGC	1 cut(s)	89
BlpI	GCTNAGC	1 cut(s)	560
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	761
Bme18I	GGWCC	1 cut(s)	605
BmeRI	GACNNNNNGTC	2 cut(s)	931, 975
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	1 cut(s)	761
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	741
BmuI	ACTGGG	1 cut(s)	273
BpiI	GAAGAC	2 cut(s)	651, 945
Bpu10I	CCTNAGC	1 cut(s)	697
Bpu1102I	GCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	2 cut(s)	103, 333
BsaXI	ACNNNNNCTCC	4 cut(s)	393, 423, 638, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	799
Bse1I	ACTGG	5 cut(s)	142, 193, 268, 634, 721
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	761
BseDI	CCNNGG	2 cut(s)	103, 333
BseGI	GGATG	2 cut(s)	273, 494
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	1 cut(s)	799
BseMII	CTCAG	3 cut(s)	33, 574, 759
BseNI	ACTGG	5 cut(s)	142, 193, 268, 634, 721
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	992
BshFI	GGCC	1 cut(s)	80
BsiHKAI	GWGCWC	3 cut(s)	62, 670, 828
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	799
BsmAI	GTCTC	2 cut(s)	757, 918
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	3 cut(s)	62, 670, 828
Bsp1407I	TGTACA	2 cut(s)	428, 491
Bsp143I	GATC	1 cut(s)	943
Bsp1720I	GCTNAGC	1 cut(s)	560
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	1 cut(s)	992
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	3 cut(s)	32, 573, 758
BspFNI	CGCG	1 cut(s)	992
BspLI	GGNNCC	1 cut(s)	520
BsrGI	TGTACA	2 cut(s)	428, 491
BsrI	ACTGG	5 cut(s)	142, 193, 268, 634, 721
BssECI	CCNNGG	2 cut(s)	103, 333
BssMI	GATC	1 cut(s)	943
BssNAI	GTATAC	1 cut(s)	880
BssT1I	CCWWGG	1 cut(s)	103
Bst1107I	GTATAC	1 cut(s)	880
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	4 cut(s)	433, 784, 884, 929
BstAUI	TGTACA	2 cut(s)	428, 491
BstDEI	CTNAG	4 cut(s)	19, 560, 697, 745
BstDSI	CCRYGG	2 cut(s)	103, 333
BstF5I	GGATG	2 cut(s)	273, 494
BstFNI	CGCG	1 cut(s)	992
BstKTI	GATC	1 cut(s)	946
BstMAI	GTCTC	2 cut(s)	757, 918
BstMBI	GATC	1 cut(s)	943
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 717, 738
BstNI	CCWGG	1 cut(s)	761
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	759
BstSLI	GKGCMC	1 cut(s)	670
BstUI	CGCG	1 cut(s)	992
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	2 cut(s)	651, 945
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstZ17I	GTATAC	1 cut(s)	880
BsuI	GTATCC	1 cut(s)	800
BsuRI	GGCC	1 cut(s)	80
BtgI	CCRYGG	2 cut(s)	103, 333
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	2 cut(s)	273, 494
BtsIMutI	CAGTG	6 cut(s)	27, 186, 261, 438, 789, 830
CaiI	CAGNNNCTG	2 cut(s)	26, 437
Cfr13I	GGNCC	1 cut(s)	605
CseI	GACGC	2 cut(s)	747, 998
Csp6I	GTAC	3 cut(s)	429, 492, 724
CviQI	GTAC	3 cut(s)	429, 492, 724
DdeI	CTNAG	4 cut(s)	19, 560, 697, 745
DpnI	GATC	1 cut(s)	945
DpnII	GATC	1 cut(s)	943
DriI	GACNNNNNGTC	2 cut(s)	931, 975
EaeI	YGGCCR	1 cut(s)	78
Eam1105I	GACNNNNNGTC	2 cut(s)	931, 975
Ecl136II	GAGCTC	2 cut(s)	60, 826
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	62, 828
Eco32I	GATATC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	605
Eco53kI	GAGCTC	2 cut(s)	60, 826
EcoICRI	GAGCTC	2 cut(s)	60, 826
EcoRII	CCWGG	1 cut(s)	759
EcoRV	GATATC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	103
EcoT38I	GRGCYC	2 cut(s)	62, 828
ErhI	CCWWGG	1 cut(s)	103
FaqI	GGGAC	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	879
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	2 cut(s)	280, 481
FriOI	GRGCYC	2 cut(s)	62, 828
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	80
HgaI	GACGC	2 cut(s)	747, 998
HinfI	GANTC	5 cut(s)	328, 355, 818, 976, 1004
Hpy166II	GTNNAC	3 cut(s)	492, 668, 880
Hpy188I	TCNGA	6 cut(s)	28, 309, 737, 823, 937, 948
Hpy188III	TCNNGA	1 cut(s)	793
Hpy8I	GTNNAC	3 cut(s)	492, 668, 880
Hpy99I	CGWCG	1 cut(s)	992
HpyAV	CCTTC	2 cut(s)	602, 952
HpyCH4III	ACNGT	4 cut(s)	433, 784, 884, 929
HpyCH4IV	ACGT	2 cut(s)	441, 797
HpyCH4V	TGCA	7 cut(s)	161, 377, 502, 526, 668, 711, 732
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 717, 738
HpyF3I	CTNAG	4 cut(s)	19, 560, 697, 745
HpySE526I	ACGT	2 cut(s)	441, 797
Kzo9I	GATC	1 cut(s)	943
LmnI	GCTCC	6 cut(s)	35, 577, 698, 823, 895, 994
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	741
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	2 cut(s)	441, 797
MaeIII	GTNAC	3 cut(s)	154, 433, 770
MalI	GATC	1 cut(s)	945
MboI	GATC	1 cut(s)	943
MboII	GAAGA	7 cut(s)	19, 22, 350, 541, 604, 651, 950
MhlI	GDGCHC	3 cut(s)	62, 670, 828
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	3 cut(s)	69, 507, 554
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	985
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	7 cut(s)	28, 265, 290, 476, 737, 920, 955
Mox20I	TGGCCA	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	3 cut(s)	288, 450, 1009
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	749
MspR9I	CCNGG	1 cut(s)	761
MvaI	CCWGG	1 cut(s)	761
MvnI	CGCG	1 cut(s)	992
MwoI	GCNNNNNNNGC	3 cut(s)	479, 717, 738
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	1 cut(s)	943
NlaIV	GGNNCC	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	433, 770
NspI	RCATGY	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	3 cut(s)	328, 355, 818
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	1 cut(s)	984
PpsI	GAGTC	1 cut(s)	984
Psp124BI	GAGCTC	2 cut(s)	62, 828
Psp6I	CCWGG	1 cut(s)	759
PspGI	CCWGG	1 cut(s)	759
PspN4I	GGNNCC	1 cut(s)	520
PspPI	GGNCC	1 cut(s)	605
PstNI	CAGNNNCTG	2 cut(s)	26, 437
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	3 cut(s)	430, 493, 725
RsaNI	GTAC	3 cut(s)	429, 492, 724
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	2 cut(s)	62, 828
SaqAI	TTAA	3 cut(s)	288, 450, 1009
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	1 cut(s)	943
Sau96I	GGNCC	1 cut(s)	605
SchI	GAGTC	1 cut(s)	985
ScrFI	CCNGG	1 cut(s)	761
SduI	GDGCHC	3 cut(s)	62, 670, 828
SfaNI	GCATC	1 cut(s)	741
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	3 cut(s)	69, 507, 554
SsiI	CCGC	1 cut(s)	992
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	663
SstI	GAGCTC	2 cut(s)	62, 828
StyD4I	CCNGG	1 cut(s)	759
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	4 cut(s)	433, 784, 884, 929
TaiI	ACGT	2 cut(s)	444, 800
TaqI	TCGA	3 cut(s)	314, 539, 615
TasI	AATT	3 cut(s)	69, 507, 554
TatI	WGTACW	2 cut(s)	428, 491
TfiI	GAWTC	3 cut(s)	328, 355, 818
Tru1I	TTAA	3 cut(s)	288, 450, 1009
Tru9I	TTAA	3 cut(s)	288, 450, 1009
TscAI	CASTG	6 cut(s)	27, 193, 268, 438, 789, 837
TseFI	GTSAC	2 cut(s)	433, 770
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	2 cut(s)	433, 770
TspDTI	ATGAA	5 cut(s)	62, 284, 350, 667, 791
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	6 cut(s)	27, 193, 268, 438, 789, 837
VneI	GTGCAC	1 cut(s)	666
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	879
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.