Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Forward (+)

33841405 .. 33845778

Gene Structure 4374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATTCCCGTGGTTTGTGTGATGGAATGGATTCTTAACAACAAGCAGTATTCCAAGGAGGTTAAAATGTCTGTTGTGGTTGTGGTTATAGGTGTTGGTGTTTGTACCGTGACTGATGTGAAAGTTAACCTCAAAGGCTTCATATGCGCCTGCCTAGCAGTTTTGTCCACTTCTTTCCAGCAAATTTCTATTGGGTCTCCTCAAAAGAAACATTCAGTTGGATCCTTTGAATTGCTGAGTAAGACTGCTCCAATATTTCAAGCCATTTCTCTACTCATTCTCGGCCCATTCATTGATTACATCCTTGGTGGTACATTCATAACAGACTATAAGATGTCTTCTGGTGCCATTGCATTCATTCTTCTTTCGTGCTCCTTAGCTGTGTTTTGCAATATTAGCCAGTACCTCTGTATTGGACGTTTCTCTGCTGTTTCATTCCAGGTTTTAGGTCACATGAAAACAGTATGTGTCCTCACATTAGGGTGGCTTCTCTTTGATTCAGAGCTCACTTTCAAGAACATTATGGGGATGATTCTTGCAGTTGTTGGCATGGTGATTTATAGTTGGGCTGTCGAGGCAGAAAAACAGTCTGGCAAACCCGTGTCCCATTCAAAAACCAGCATGACAGAAGAGGAAATTGAACTTTTGAAGGCAGGACTGGATACCACTACTGTGAAGGATATTGAACATGGAGCAACTAAAGTTTACAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

238

Amino Acids

25.97

Weight (kDa)

8.37

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	7 - 188	1.4e-15	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AclWI	GGATC	2 cut(s)	216, 229
AcsI	RAATTY	1 cut(s)	183
AfaI	GTAC	3 cut(s)	106, 313, 404
AgsI	TTSAA	7 cut(s)	230, 260, 514, 612, 641, 649, 686
AjnI	CCWGG	1 cut(s)	438
AleI	CACNNNNGTG	1 cut(s)	671
AluBI	AGCT	2 cut(s)	380, 505
AluI	AGCT	2 cut(s)	380, 505
Alw21I	GWGCWC	2 cut(s)	374, 507
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	216, 229
AoxI	GGCC	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	565
BamHI	GGATCC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	374, 507
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	440
BciVI	GTATCC	1 cut(s)	655
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	655
Bme1390I	CCNGG	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	2 cut(s)	223, 346
BmrFI	CCNGG	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	9, 54, 304
Bse1I	ACTGG	2 cut(s)	400, 663
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	3 cut(s)	9, 54, 304
BseGI	GGATG	2 cut(s)	300, 534
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	2 cut(s)	400, 663
BseRI	GAGGAG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	2 cut(s)	374, 507
BslFI	GGGAC	1 cut(s)	589
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	589
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	285
Bso31I	GGTCTC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	374, 507
Bsp143I	GATC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	223, 346
BspPI	GGATC	2 cut(s)	216, 229
BspT107I	GGYRCC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	400, 663
BssECI	CCNNGG	3 cut(s)	9, 54, 304
BssMI	GATC	1 cut(s)	221
BssT1I	CCWWGG	2 cut(s)	54, 304
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	4 cut(s)	109, 463, 588, 673
Bst6I	CTCTTC	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	236, 376
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	300, 534
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 155, 396, 575
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	438
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	300, 534
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	105, 312, 403
CviAII	CATG	4 cut(s)	454, 550, 622, 689
CviJI	RGCY	8 cut(s)	138, 263, 285, 380, 399, 487, 505, 569
CviKI_1	RGCY	8 cut(s)	138, 263, 285, 380, 399, 487, 505, 569
CviQI	GTAC	3 cut(s)	105, 312, 403
DdeI	CTNAG	2 cut(s)	236, 376
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Ecl136II	GAGCTC	1 cut(s)	505
Eco130I	CCWWGG	2 cut(s)	54, 304
Eco24I	GRGCYC	1 cut(s)	507
Eco31I	GGTCTC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	2 cut(s)	54, 304
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	54, 304
FaeI	CATG	4 cut(s)	457, 553, 625, 692
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	4 cut(s)	453, 549, 621, 688
FauNDI	CATATG	1 cut(s)	143
FokI	GGATG	2 cut(s)	287, 541
FriOI	GRGCYC	1 cut(s)	507
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	4 cut(s)	457, 553, 625, 692
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	4 cut(s)	4, 31, 497, 532
HpaI	GTTAAC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	3 cut(s)	127, 168, 706
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	1 cut(s)	514
Hpy8I	GTNNAC	3 cut(s)	127, 168, 706
HpyAV	CCTTC	2 cut(s)	643, 670
HpyCH4III	ACNGT	4 cut(s)	109, 463, 588, 673
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	3 cut(s)	353, 390, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 155, 396, 575
HpyF3I	CTNAG	2 cut(s)	236, 376
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	4 cut(s)	457, 553, 625, 692
HspAI	GCGC	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	221
LmnI	GCTCC	3 cut(s)	253, 377, 692
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	2 cut(s)	109, 449
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	3 cut(s)	330, 353, 641
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	374, 507
MluCI	AATT	3 cut(s)	183, 230, 636
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	8 cut(s)	52, 140, 210, 416, 482, 568, 625, 705
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	3 cut(s)	36, 63, 126
MslI	CAYNNNNRTG	2 cut(s)	481, 671
MspR9I	CCNGG	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	4 cut(s)	144, 155, 396, 575
NdeI	CATATG	1 cut(s)	143
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	4 cut(s)	457, 553, 625, 692
NlaIV	GGNNCC	2 cut(s)	223, 346
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	2 cut(s)	109, 449
OliI	CACNNNNGTG	1 cut(s)	671
PctI	GAATGC	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	4 cut(s)	4, 31, 497, 532
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	223, 346
PspPI	GGNCC	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	3 cut(s)	106, 313, 404
RsaNI	GTAC	3 cut(s)	105, 312, 403
RseI	CAYNNNNRTG	2 cut(s)	481, 671
SacI	GAGCTC	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	36, 63, 126
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	2 cut(s)	374, 507
SmiMI	CAYNNNNRTG	2 cut(s)	481, 671
Sse9I	AATT	3 cut(s)	183, 230, 636
SspI	AATATT	2 cut(s)	255, 394
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	2 cut(s)	54, 304
TaaI	ACNGT	4 cut(s)	109, 463, 588, 673
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	1 cut(s)	573
TasI	AATT	3 cut(s)	183, 230, 636
TfiI	GAWTC	4 cut(s)	4, 31, 497, 532
Tru1I	TTAA	3 cut(s)	36, 63, 126
Tru9I	TTAA	3 cut(s)	36, 63, 126
TseFI	GTSAC	2 cut(s)	109, 449
Tsp45I	GTSAC	2 cut(s)	109, 449
TspDTI	ATGAA	6 cut(s)	130, 280, 307, 346, 423, 470
XapI	RAATTY	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.