Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001215

Physical Location & Seq

Genomic Coordinates Reverse (-)

4629323 .. 4631459

Gene Structure 2137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28841

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTACTTATGCCTCCCGCTCGCTTTGTTCCACTTCTCTGTTACTGCATTGGTTGGTTTCATATCAAATGCATCTGGGTACTCAGCATCGAAACATGTTCCTCTTTGGGAACTTATTTGGTTCTCACTTGTAGCCAATGCCTCGATTACGGGGATGAACTTGAGTCTCATGCTTAACTCTGTCGGCTTTTATCAGATATCAAAGTTGAGCATGATTCCGGTGGTCTCTGATTTCTCAAGGGAAGTCAAGATTGCTGTGGCAGTGGTGATAATAGGTGTGGGCATATGTACCGTCACCGATGTTAGAGTTAATGCCAAAGGTTTTCTCTGTGCTTTTGTGGCCATCTTGTGTACATCATTACAACAAATTTCAATAGGTTCATTACAGAAGTCAGAAGATGAGAAGAAATACTCGATGACGTCTGGTGCATTTGCATTCATAATGCTCTCTTGCTCCCTAGCAGTATTCTGCAACATCAGTCGGTACCTCTGCATCGGTAGATTCTCAGCCGTGTCATTCCAGGTTTTATTCATTTTAGGCCACATGAAGACTGTCTGTGTCTTGACATTGGGGTGGCTTCTCTTTGATTCAGCGCTCACATTTAAGAACTTGATGGGAATGGCTCTTGCAGTTGTCGGCATTATAGTTTACAGTTGGGTTGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

222

Amino Acids

24.05

Weight (kDa)

8.81

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21070 AT1G76670 AT1G76670 AT5G42420
fragaria_vesca	FvH4_2g17260 FvH4_2g17260 FvH4_5g26900 FvH4_5g26900
malus_domestica	MD05G1151400.v1.1 MD10G1145600.v1.1
prunus_persica	Prupe.8G184000_v2.0.a1 Prupe.8G184000_v2.0.a1 Prupe.8G184100_v2.0.a1
pyrus_communis	pycom05g14590
rosa_chinensis	RchiOBHm_Chr5g0006941 RchiOBHm_Chr5g0007051 RchiOBHm_Chr5g0007201 RchiOBHm_Chr5g0007361 RchiOBHm_Chr6g0281761 RchiOBHm_Chr7g0217841 RchiOBHm_Chr7g0217851 RchiOBHm_Chr7g0217941
rosa_laevigata	RLG00000002431 RLG00000012937
rosa_multiflora	Rmu_co8042740.1_g000001 Rmu_sc0002566.1_g000002 Rmu_sc0004530.1_g000002 Rmu_sc0012998.1_g000001 Rmu_sc0014282.1_g000009 Rmu_ssc0000126.1_g000047
rosa_roxburghii	Rroxscaffold_3G00241620 Rroxscaffold_3G00241650 Rroxscaffold_7G00186820
rosa_rugosa	Rorug04G0426000 Rorug06G0143500 Rorug07G0171700 Rorug07G0171800 Rorug07G0171900 Rorug07G0172000
rosa_samantha	Rh5CG061300 Rh6AG256200 Rh6BG259100 Rh6CG258100 Rh6DG250200 Rh7AG313000 Rh7AG313500 Rh7AG314400 Rh7BG304500
rosa_wichuraiana	Rw0G017280 Rw5G005110 Rw5G005150 Rw6G022210 Rw7G026510 Rw7G026540 Rw7G026580 Rw7G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	422
Acc65I	GGTACC	1 cut(s)	483
AccB1I	GGYRCC	1 cut(s)	483
AccBSI	CCGCTC	1 cut(s)	19
AciI	CCGC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	419
AfaI	GTAC	5 cut(s)	5, 80, 289, 352, 485
AfeI	AGCGCT	1 cut(s)	594
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	372
AjnI	CCWGG	1 cut(s)	519
Alw26I	GTCTC	2 cut(s)	170, 229
Aor51HI	AGCGCT	1 cut(s)	594
AoxI	GGCC	2 cut(s)	339, 538
ApoI	RAATTY	1 cut(s)	366
Asp718I	GGTACC	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	277, 286
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	554
BccI	CCATC	2 cut(s)	350, 607
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	521
BcoDI	GTCTC	2 cut(s)	170, 229
BfaI	CTAG	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	596
Bme1390I	CCNGG	1 cut(s)	521
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	3 cut(s)	80, 95, 501
BpiI	GAAGAC	1 cut(s)	554
BpuEI	CTTGAG	2 cut(s)	181, 220
BsaHI	GRCGYC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	521
BseGI	GGATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	96, 519
BshFI	GGCC	2 cut(s)	341, 540
BshNI	GGYRCC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	170, 229
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	341, 540
Bso31I	GGTCTC	1 cut(s)	229
Bsp1407I	TGTACA	1 cut(s)	350
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	2 cut(s)	341, 540
BspCNI	CTCAG	2 cut(s)	95, 518
BspLI	GGNNCC	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	350
BssNI	GRCGYC	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	3 cut(s)	292, 553, 653
BstACI	GRCGYC	1 cut(s)	419
BstAUI	TGTACA	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	82, 505
BstF5I	GGATG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	595
BstMAI	GTCTC	2 cut(s)	170, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	341, 540
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	595
Csp6I	GTAC	5 cut(s)	4, 79, 288, 351, 484
CviAII	CATG	4 cut(s)	95, 169, 211, 544
CviJI	RGCY	8 cut(s)	134, 186, 341, 509, 540, 577, 623, 666
CviKI_1	RGCY	8 cut(s)	134, 186, 341, 509, 540, 577, 623, 666
CviQI	GTAC	5 cut(s)	4, 79, 288, 351, 484
DdeI	CTNAG	2 cut(s)	82, 505
EaeI	YGGCCR	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	198
Eco47III	AGCGCT	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	519
EcoRV	GATATC	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	4 cut(s)	98, 172, 214, 547
FatI	CATG	4 cut(s)	94, 168, 210, 543
FauI	CCCGC	1 cut(s)	24
FauNDI	CATATG	1 cut(s)	284
FokI	GGATG	1 cut(s)	166
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	2 cut(s)	341, 540
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	595
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	4 cut(s)	98, 172, 214, 547
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HinfI	GANTC	4 cut(s)	163, 214, 501, 587
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	2 cut(s)	277, 286
Hpy166II	GTNNAC	2 cut(s)	351, 649
Hpy188I	TCNGA	3 cut(s)	195, 229, 394
Hpy188III	TCNNGA	2 cut(s)	247, 562
Hpy8I	GTNNAC	2 cut(s)	351, 649
HpyCH4III	ACNGT	3 cut(s)	292, 553, 653
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	7 cut(s)	47, 71, 428, 434, 471, 492, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	82, 505
HpySE526I	ACGT	1 cut(s)	419
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	4 cut(s)	98, 172, 214, 547
HspAI	GCGC	1 cut(s)	593
KpnI	GGTACC	1 cut(s)	487
LmnI	GCTCC	1 cut(s)	458
LpnPI	CCDG	5 cut(s)	60, 231, 408, 506, 533
LweI	GCATC	3 cut(s)	80, 95, 501
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	2 cut(s)	40, 292
MbiI	CCGCTC	1 cut(s)	19
MboII	GAAGA	3 cut(s)	407, 415, 559
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	1 cut(s)	366
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	640
MnlI	CCTC	5 cut(s)	23, 111, 151, 497, 656
Mox20I	TGGCCA	1 cut(s)	341
Mph1103I	ATGCAT	1 cut(s)	73
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	3 cut(s)	174, 309, 603
MslI	CAYNNNNRTG	1 cut(s)	571
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	521
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeI	CATATG	1 cut(s)	284
NlaIII	CATG	4 cut(s)	98, 172, 214, 547
NlaIV	GGNNCC	1 cut(s)	485
NmuCI	GTSAC	1 cut(s)	292
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	1 cut(s)	98
PciI	ACATGT	1 cut(s)	94
PctI	GAATGC	1 cut(s)	434
PfeI	GAWTC	3 cut(s)	214, 501, 587
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PscI	ACATGT	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	485
RsaI	GTAC	5 cut(s)	5, 80, 289, 352, 485
RsaNI	GTAC	5 cut(s)	4, 79, 288, 351, 484
RseI	CAYNNNNRTG	1 cut(s)	571
SaqAI	TTAA	3 cut(s)	174, 309, 603
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	521
SetI	ASST	6 cut(s)	277, 322, 379, 422, 489, 525
SfaNI	GCATC	3 cut(s)	80, 95, 501
SmiMI	CAYNNNNRTG	1 cut(s)	571
SmlI	CTYRAG	2 cut(s)	160, 235
SmoI	CTYRAG	2 cut(s)	160, 235
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	519
TaaI	ACNGT	3 cut(s)	292, 553, 653
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	3 cut(s)	89, 143, 413
TasI	AATT	1 cut(s)	366
TatI	WGTACW	2 cut(s)	3, 350
TfiI	GAWTC	3 cut(s)	214, 501, 587
Tru1I	TTAA	3 cut(s)	174, 309, 603
Tru9I	TTAA	3 cut(s)	174, 309, 603
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	6 cut(s)	49, 170, 369, 427, 520, 560
TspRI	CASTG	1 cut(s)	267
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	1 cut(s)	98
XspI	CTAG	1 cut(s)	458
ZraI	GACGTC	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.