Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000205.1

Orthogroup ID

OG0008215

Physical Location & Seq

Genomic Coordinates Reverse (-)

162 .. 1973

Gene Structure 1812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000205.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atgtcagaaccggcccacacccttcattataaggctcgggcccgcaattattgggcgtgcgagtgtcggtttttggctaaagctcaaagatggagtggttggaaagacactttgatggacttgaaagctcatcttgatcgtggtaagaagctacctttccctgatggaatccttatcaatggtcgcgggcccaatcagttttctctcacatttgagcaaggaaagacttacaggctcaggatatccaacgtcgggttgcaacactcactcaacttccgcattcaagaccacaaaatgaagttggtggaagtggaaggaacacacaccctccaaactacttactcatctcttgatgtacacgttggtcaatcttactctgttctagtaacagctgatcagccgggacatgactactacattgtggtttcctctcgtttcagcactccgattctcacaacccccggcattcttcattacagcggcgctgggggacaagtctctggcccgccccctggtggacctacaatccaaattgactggaccaatcttacagcaagtggaccaaggccaaacccacagggctcataccactatggactcattcccttggccaaaacctacatcctagcaagttctgctggtcaagtcagtggcaagcaaagatatggagtgaacagtgtgtcctttatcccagcagacactcccctaaagcttgctgactactacaaaattgaaggagttttccgtgttggaagcatctccgacaggcctactggtggtggattgtatctagacacatcagttttgggtgctgattacagagcattcgtagaaattgtgttccaaaatgatgaagatatagttcagagctggcatcttgatggttaccagttctttgttgttggcatggatggagggaagtggacagctgctagtaggaacgggtacaatctccgagatgcagtggctcgttccaccactcaggtatatcccttctcatggacggcaatacatgtttcacttgataatgtgggaatgtggaacttgaggactgagttctgggcacgacagtaccttggccaacaattgtatttgcgtgtttatacaacatctacttcaatcagggatgaataccctattccgaggaacgcacgtctttgtggcagagcaagtggccgacgcacacgaccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

397

Amino Acids

44.43

Weight (kDa)

9.42

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21850 AT1G21860 AT1G41830 AT1G76160
fragaria_vesca	FvH4_2g37780 FvH4_2g37780 FvH4_2g37780 FvH4_2g37780
malus_domestica	MD08G1005000.v1.1 MD15G1004400.v1.1
prunus_persica	Prupe.1G357100_v2.0.a1
pyrus_communis	pycom08g00390 pycom15g00330
rosa_chinensis	RchiOBHm_Chr6g0303931
rosa_laevigata	RLG00000011032
rosa_multiflora	Rmu_ssc0000205.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164250
rosa_rugosa	Rorug06G0326100
rosa_samantha	Rh6AG440300 Rh6BG462700 Rh6CG452600 Rh6DG439600
rosa_wichuraiana	Rw6G038130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
AccII	CGCG	1 cut(s)	186
AciI	CCGC	5 cut(s)	43, 186, 277, 480, 506
AcoI	YGGCCR	3 cut(s)	609, 1078, 1174
AfaI	GTAC	3 cut(s)	357, 947, 1073
AfiI	CCNNNNNNNGG	5 cut(s)	252, 512, 515, 776, 999
AflIII	ACRYGT	2 cut(s)	358, 1012
AgsI	TTSAA	4 cut(s)	124, 284, 734, 1119
AjiI	CACGTC	1 cut(s)	1154
AjnI	CCWGG	1 cut(s)	511
AloI	GAACNNNNNNTCC	2 cut(s)	665, 697
AluBI	AGCT	7 cut(s)	83, 128, 151, 392, 712, 870, 929
AluI	AGCT	7 cut(s)	83, 128, 151, 392, 712, 870, 929
Alw26I	GTCTC	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	9 cut(s)	12, 39, 188, 502, 566, 609, 767, 1078, 1174
ApaI	GGGCCC	2 cut(s)	43, 192
ApeKI	GCWGC	1 cut(s)	929
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	9 cut(s)	13, 39, 40, 188, 189, 503, 518, 540, 560
AsuC2I	CCSGG	2 cut(s)	402, 462
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	3 cut(s)	518, 540, 560
BaeGI	GKGCMC	3 cut(s)	43, 192, 1066
BaeI	ACNNNNGTAYC	2 cut(s)	1055, 1088
BalI	TGGCCA	2 cut(s)	611, 1080
BanII	GRGCYC	3 cut(s)	43, 192, 584
BbvI	GCAGC	1 cut(s)	916
BccI	CCATC	5 cut(s)	84, 109, 158, 875, 905
BceAI	ACGGC	1 cut(s)	1020
BciT130I	CCWGG	1 cut(s)	513
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	2 cut(s)	402, 462
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	5 cut(s)	383, 626, 791, 933, 1192
BfoI	RGCGCY	1 cut(s)	486
BisI	GCNGC	2 cut(s)	481, 930
BlsI	GCNGC	2 cut(s)	482, 931
Bme1390I	CCNGG	3 cut(s)	402, 462, 513
Bme18I	GGWCC	3 cut(s)	518, 540, 560
BmeT110I	CYCGRG	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	1154
BmgT120I	GGNCC	9 cut(s)	13, 39, 40, 188, 189, 503, 518, 540, 560
BmiI	GGNNCC	2 cut(s)	41, 190
BmrFI	CCNGG	3 cut(s)	402, 462, 513
BmsI	GCATC	3 cut(s)	765, 883, 949
Bpu10I	CCTNAGC	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	1066
BpuMI	CCSGG	2 cut(s)	402, 462
BsaJI	CCNNGG	6 cut(s)	460, 511, 563, 606, 1075, 1142
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	5 cut(s)	252, 512, 515, 776, 999
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	3 cut(s)	542, 778, 889
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	6 cut(s)	460, 511, 563, 606, 1075, 1142
BseGI	GGATG	3 cut(s)	621, 916, 1132
BseLI	CCNNNNNNNGG	5 cut(s)	252, 512, 515, 776, 999
BseMII	CTCAG	3 cut(s)	250, 995, 1044
BseNI	ACTGG	3 cut(s)	542, 778, 889
BseSI	GKGCMC	3 cut(s)	43, 192, 1066
BseXI	GCAGC	1 cut(s)	916
BseYI	CCCAGC	2 cut(s)	485, 691
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	9 cut(s)	14, 41, 190, 504, 568, 611, 769, 1080, 1176
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	11, 401, 462
BslFI	GGGAC	2 cut(s)	417, 504
BslI	CCNNNNNNNGG	5 cut(s)	252, 512, 515, 776, 999
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	2 cut(s)	417, 504
BsmI	GAATGC	3 cut(s)	279, 465, 824
BsnI	GGCC	9 cut(s)	14, 41, 190, 504, 568, 611, 769, 1080, 1176
BsoBI	CYCGRG	1 cut(s)	36
Bsp120I	GGGCCC	2 cut(s)	39, 188
Bsp1286I	GDGCHC	4 cut(s)	43, 192, 584, 1066
Bsp1407I	TGTACA	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	136, 394
BspACI	CCGC	5 cut(s)	43, 186, 277, 480, 506
BspANI	GGCC	9 cut(s)	14, 41, 190, 504, 568, 611, 769, 1080, 1176
BspCNI	CTCAG	3 cut(s)	249, 994, 1045
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	41, 190
BsrFI	RCCGGY	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	355
BsrI	ACTGG	3 cut(s)	542, 778, 889
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	6 cut(s)	460, 511, 563, 606, 1075, 1142
BssMI	GATC	2 cut(s)	136, 394
BssT1I	CCWWGG	3 cut(s)	563, 606, 1075
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	677, 1071
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstAUI	TGTACA	1 cut(s)	355
BstC8I	GCNNGC	7 cut(s)	43, 58, 188, 506, 656, 714, 872
BstDEI	CTNAG	3 cut(s)	236, 981, 1053
BstEII	GGTNACC	1 cut(s)	884
BstF5I	GGATG	3 cut(s)	621, 916, 1132
BstFNI	CGCG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	2 cut(s)	139, 397
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	2 cut(s)	136, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	1016
BstPI	GGTNACC	1 cut(s)	884
BstSCI	CCNGG	3 cut(s)	400, 460, 511
BstSLI	GKGCMC	3 cut(s)	43, 192, 1066
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	916
BsuRI	GGCC	9 cut(s)	14, 41, 190, 504, 568, 611, 769, 1080, 1176
BtrI	CACGTC	1 cut(s)	1154
BtsCI	GGATG	3 cut(s)	621, 916, 1132
BtsI	GCAGTG	1 cut(s)	969
BtsIMutI	CAGTG	3 cut(s)	655, 682, 969
Cac8I	GCNNGC	7 cut(s)	43, 58, 188, 506, 656, 714, 872
CfoI	GCGC	1 cut(s)	485
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	9 cut(s)	13, 39, 40, 188, 189, 503, 518, 540, 560
CseI	GACGC	1 cut(s)	1188
Csp6I	GTAC	3 cut(s)	356, 946, 1072
CviAII	CATG	4 cut(s)	407, 907, 999, 1013
CviQI	GTAC	3 cut(s)	356, 946, 1072
DdeI	CTNAG	3 cut(s)	236, 981, 1053
DpnI	GATC	2 cut(s)	138, 396
DpnII	GATC	2 cut(s)	136, 394
EaeI	YGGCCR	3 cut(s)	609, 1078, 1174
Eco130I	CCWWGG	3 cut(s)	563, 606, 1075
Eco147I	AGGCCT	1 cut(s)	769
Eco24I	GRGCYC	3 cut(s)	43, 192, 584
Eco32I	GATATC	1 cut(s)	243
Eco47I	GGWCC	3 cut(s)	518, 540, 560
Eco88I	CYCGRG	1 cut(s)	36
Eco91I	GGTNACC	1 cut(s)	884
EcoO65I	GGTNACC	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	511
EcoRV	GATATC	1 cut(s)	243
EcoT14I	CCWWGG	3 cut(s)	563, 606, 1075
EcoT38I	GRGCYC	3 cut(s)	43, 192, 584
ErhI	CCWWGG	3 cut(s)	563, 606, 1075
FaeI	CATG	4 cut(s)	410, 910, 1002, 1016
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	2 cut(s)	417, 504
FatI	CATG	4 cut(s)	406, 906, 998, 1012
FauI	CCCGC	3 cut(s)	50, 179, 513
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	481, 930
FokI	GGATG	3 cut(s)	608, 923, 1139
FriOI	GRGCYC	3 cut(s)	43, 192, 584
Fsp4HI	GCNGC	2 cut(s)	481, 930
FspBI	CTAG	5 cut(s)	383, 626, 791, 933, 1192
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	2 cut(s)	481, 930
GsaI	CCCAGC	2 cut(s)	489, 695
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	9 cut(s)	14, 41, 190, 504, 568, 611, 769, 1080, 1176
HapII	CCGG	3 cut(s)	11, 401, 462
HgaI	GACGC	1 cut(s)	1188
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	4 cut(s)	410, 910, 1002, 1016
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	3 cut(s)	168, 448, 597
HpaII	CCGG	3 cut(s)	11, 401, 462
Hpy166II	GTNNAC	5 cut(s)	358, 518, 560, 673, 924
Hpy188I	TCNGA	6 cut(s)	7, 447, 763, 867, 956, 1143
Hpy188III	TCNNGA	6 cut(s)	134, 238, 284, 350, 791, 878
Hpy8I	GTNNAC	5 cut(s)	358, 518, 560, 673, 924
Hpy99I	CGWCG	2 cut(s)	254, 1182
HpyAV	CCTTC	4 cut(s)	32, 308, 728, 1003
HpyCH4III	ACNGT	2 cut(s)	677, 1071
HpyCH4IV	ACGT	3 cut(s)	249, 360, 1153
HpyCH4V	TGCA	2 cut(s)	259, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpyF3I	CTNAG	3 cut(s)	236, 981, 1053
HpySE526I	ACGT	3 cut(s)	249, 360, 1153
Hsp92II	CATG	4 cut(s)	410, 910, 1002, 1016
HspAI	GCGC	1 cut(s)	483
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	136, 394
Lsp1109I	GCAGC	1 cut(s)	916
LweI	GCATC	3 cut(s)	765, 883, 949
MaeI	CTAG	5 cut(s)	383, 626, 791, 933, 1192
MaeII	ACGT	3 cut(s)	249, 360, 1153
MaeIII	GTNAC	2 cut(s)	385, 884
MalI	GATC	2 cut(s)	138, 396
MboI	GATC	2 cut(s)	136, 394
MboII	GAAGA	2 cut(s)	461, 866
MfeI	CAATTG	1 cut(s)	1085
MhlI	GDGCHC	4 cut(s)	43, 192, 584, 1066
MlsI	TGGCCA	2 cut(s)	611, 1080
MluCI	AATT	5 cut(s)	46, 531, 729, 834, 1085
MluNI	TGGCCA	2 cut(s)	611, 1080
MlyI	GAGTC	1 cut(s)	591
MmeI	TCCRAC	4 cut(s)	80, 270, 730, 786
MnlI	CCTC	5 cut(s)	338, 439, 908, 1041, 1137
Mox20I	TGGCCA	2 cut(s)	611, 1080
MscI	TGGCCA	2 cut(s)	611, 1080
MslI	CAYNNNNRTG	2 cut(s)	113, 879
Msp20I	TGGCCA	2 cut(s)	611, 1080
MspA1I	CMGCKG	3 cut(s)	392, 480, 929
MspI	CCGG	3 cut(s)	11, 401, 462
MspR9I	CCNGG	3 cut(s)	402, 462, 513
MunI	CAATTG	1 cut(s)	1085
Mva1269I	GAATGC	3 cut(s)	279, 465, 824
MvaI	CCWGG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	635
NciI	CCSGG	2 cut(s)	402, 462
NdeII	GATC	2 cut(s)	136, 394
NlaIII	CATG	4 cut(s)	410, 910, 1002, 1016
NlaIV	GGNNCC	2 cut(s)	41, 190
NspI	RCATGY	1 cut(s)	1016
PceI	AGGCCT	1 cut(s)	769
PciI	ACATGT	1 cut(s)	1012
PctI	GAATGC	3 cut(s)	279, 465, 824
PfeI	GAWTC	2 cut(s)	168, 448
PkrI	GCNGC	2 cut(s)	482, 931
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
PscI	ACATGT	1 cut(s)	1012
PsiI	TTATAA	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	511
PspEI	GGTNACC	1 cut(s)	884
PspFI	CCCAGC	2 cut(s)	485, 691
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	2 cut(s)	41, 190
PspOMI	GGGCCC	2 cut(s)	39, 188
PspPI	GGNCC	9 cut(s)	13, 39, 40, 188, 189, 503, 518, 540, 560
PvuII	CAGCTG	2 cut(s)	392, 929
RsaI	GTAC	3 cut(s)	357, 947, 1073
RsaNI	GTAC	3 cut(s)	356, 946, 1072
RseI	CAYNNNNRTG	2 cut(s)	113, 879
SatI	GCNGC	2 cut(s)	481, 930
Sau3AI	GATC	2 cut(s)	136, 394
Sau96I	GGNCC	9 cut(s)	13, 39, 40, 188, 189, 503, 518, 540, 560
SchI	GAGTC	1 cut(s)	591
ScrFI	CCNGG	3 cut(s)	402, 462, 513
SduI	GDGCHC	4 cut(s)	43, 192, 584, 1066
SfaNI	GCATC	3 cut(s)	765, 883, 949
SinI	GGWCC	3 cut(s)	518, 540, 560
SmiMI	CAYNNNNRTG	2 cut(s)	113, 879
SmlI	CTYRAG	1 cut(s)	1045
SmoI	CTYRAG	1 cut(s)	1045
Sse9I	AATT	5 cut(s)	46, 531, 729, 834, 1085
SseBI	AGGCCT	1 cut(s)	769
SsiI	CCGC	5 cut(s)	43, 186, 277, 480, 506
SspMI	CTAG	5 cut(s)	383, 626, 791, 933, 1192
StuI	AGGCCT	1 cut(s)	769
StyD4I	CCNGG	3 cut(s)	400, 460, 511
StyI	CCWWGG	3 cut(s)	563, 606, 1075
TaaI	ACNGT	2 cut(s)	677, 1071
TaiI	ACGT	3 cut(s)	252, 363, 1156
TasI	AATT	5 cut(s)	46, 531, 729, 834, 1085
TatI	WGTACW	1 cut(s)	355
TauI	GCSGC	1 cut(s)	483
TfiI	GAWTC	2 cut(s)	168, 448
TscAI	CASTG	3 cut(s)	655, 682, 969
TseI	GCWGC	1 cut(s)	929
TspDTI	ATGAA	5 cut(s)	14, 311, 461, 867, 1143
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	3 cut(s)	655, 682, 969
VpaK11BI	GGWCC	3 cut(s)	518, 540, 560
XbaI	TCTAGA	1 cut(s)	790
XceI	RCATGY	1 cut(s)	1016
XspI	CTAG	5 cut(s)	383, 626, 791, 933, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.