Rh6AG440300

L-ascorbate oxidase homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
62814174 .. 62818901
4728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG440300.1

Sequence Viewer

Length: 1356 bp
ATGCCGCTAAACTTAGCGGGAGGTGCCATTTCGGCACTGCTATGCCTCAGTCTCACTGCCACTCTGCTCTCCGTGGTTACCGCTGAAGATCCCTACCGTTTCTTCGAATGGAATGTCACTTACGGCGACATCTACCCGCTCGGTGTTCGCCAAAAGGGAATACTTATCAACGGCCAGTTCCCCGGCCCGGATATTCACTCCGTTACCAATGACAACCTCATCATCAATGTCTTCAACAGCTTGGACGAGCCTTTTCTCATTTCCTGGAATGGGATCCAACAGAGACATAATTCATTTCAGGATGGTGTGTATGGGACAACTTGCCCAATTCCACCAGGGAGGAACCTTACATACATTCTCCAAGTGAAGGATCAGATTGGAAGTCTCTACTACTTCCCTTCTCTTGCATTTCACAAGGCCGCCGGTGGTTTCGGAGGCATTAGAATTCTCAGCCGGCCAAGGATTCCTGTCCCTTTTCCGGATCCCGCCGGTGACTTCACCGTTCTTATTGGGGATTGGTATAAGTCTAACCACACGGACTTGAAAGCTCATCTTGATCGTGGTAAGAAGCTACCTTTCCCTGATGGAATCCTTATCAATGGTCGCGGGCCCAATCAGTTTTCTCTCACATTTGAGCAAGGAAAGACTTACAGGCTCAGGATATCCAACGTCGGGTTGCAACACTCACTCAACTTCCGCATTCAAAACCACAAAATGAAGTTGGTGGAAGTGGAAGGAACACACACCCTCCAAACTACTTACTCATCTCTTGATGTACACGTTGGTCAATCTTACTCTGTTCTAGTAACAGCTGATCAGCCCGGACATGACTACTACATTGTGGTTTCCTCTCGTTTCAGCACTCCGATTCTCACCACCCCCGGCATTCTTCATTACAGCGGCGCTGGGGGACAAGTCTCTGGCCCACCCCCTGGTGGACCTACAATCCAAATTGACTGGTCTTTAAACCAGGCCCGCTCTATTAGGACCAATCTTACCGCAAGTGGACCAAGGCCAAACCCACAGGGCTCATACCACTATGGACTCATTCCCTTAGCCAAAACCTACATCCTAGCAAGTTCTGCTGGTCAAGTCAGTGGCAAGCAAAGATATGGAGTGAACAGTGTGTCCTTTATCCCAGCAGACACTCCCCTAAAGCTTGCTGACTACTACAAAATTGAAGGAGTTTTCCGTGTTGGAAGCATCTCCGACTGGCCTACTGGTGGTGGATTGTATCTAGACACATCAGTTTTGGGTGCTGATTACAGAGCATTCGTAGAAATTGTGTTCCAAAATGATGAAGATATAGTTCAGAGCTGGCATCTTGATGGTTACCAGTTCTTTGTTGTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

451

Amino Acids

49.51

Weight (kDa)

6.89

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 39 - 152 6.7e-37 Multicopper oxidase
Cu-oxidase PF00394 165 - 302 1.2e-44 Multicopper oxidase
Cu-oxidase_2 PF07731 382 - 451 1.4e-09 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 932
AccBSI CCGCTC 2 cut(s) 139, 978
AccII CGCG 1 cut(s) 606
AccIII TCCGGA 1 cut(s) 478
AclWI GGATC 6 cut(s) 83, 268, 281, 378, 476, 489
AcoI YGGCCR 2 cut(s) 172, 455
AcsI RAATTY 1 cut(s) 444
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 1 cut(s) 777
AfiI CCNNNNNNNGG 8 cut(s) 187, 270, 367, 478, 672, 932, 935, 1223
AflIII ACRYGT 1 cut(s) 778
AgsI TTSAA 4 cut(s) 235, 544, 704, 1181
AjnI CCWGG 4 cut(s) 263, 334, 931, 969
AloI GAACNNNNNNTCC 2 cut(s) 1112, 1144
AluBI AGCT 6 cut(s) 240, 548, 571, 812, 1159, 1317
AluI AGCT 6 cut(s) 240, 548, 571, 812, 1159, 1317
Alw26I GTCTC 4 cut(s) 56, 277, 389, 922
AlwI GGATC 6 cut(s) 83, 268, 281, 378, 476, 489
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 9 cut(s) 172, 184, 417, 455, 608, 922, 972, 1013, 1214
ApaI GGGCCC 1 cut(s) 612
ApoI RAATTY 1 cut(s) 444
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
AspLEI GCGC 1 cut(s) 905
AspS9I GGNCC 8 cut(s) 185, 608, 609, 923, 938, 973, 987, 1007
AsuC2I CCSGG 4 cut(s) 183, 188, 822, 882
AsuHPI GGTGA 3 cut(s) 490, 503, 865
AsuII TTCGAA 1 cut(s) 105
AvaII GGWCC 3 cut(s) 938, 987, 1007
BaeGI GKGCMC 1 cut(s) 612
BamHI GGATCC 2 cut(s) 273, 481
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 2 cut(s) 612, 1031
BbsI GAAGAC 1 cut(s) 223
BccI CCATC 3 cut(s) 296, 578, 1322
BceAI ACGGC 2 cut(s) 139, 187
BciT130I CCWGG 4 cut(s) 265, 336, 933, 971
BclI TGATCA 1 cut(s) 814
BcnI CCSGG 4 cut(s) 183, 188, 822, 882
BcoDI GTCTC 4 cut(s) 56, 277, 389, 922
BfaI CTAG 3 cut(s) 803, 1073, 1238
BfoI RGCGCY 1 cut(s) 906
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 3 cut(s) 5, 420, 901
BlsI GCNGC 3 cut(s) 6, 421, 902
Bme1390I CCNGG 8 cut(s) 183, 188, 265, 336, 822, 882, 933, 971
Bme18I GGWCC 3 cut(s) 938, 987, 1007
BmgT120I GGNCC 8 cut(s) 185, 608, 609, 923, 938, 973, 987, 1007
BmiI GGNNCC 5 cut(s) 25, 275, 344, 483, 610
BmrFI CCNGG 8 cut(s) 183, 188, 265, 336, 822, 882, 933, 971
BmsI GCATC 2 cut(s) 1212, 1330
BpiI GAAGAC 1 cut(s) 223
Bpu10I CCTNAGC 2 cut(s) 656, 1054
Bpu14I TTCGAA 1 cut(s) 105
BpuMI CCSGG 4 cut(s) 183, 188, 822, 882
BsaJI CCNNGG 7 cut(s) 72, 181, 335, 458, 880, 931, 1010
BsaWI WCCGGW 1 cut(s) 478
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 8 cut(s) 187, 270, 367, 478, 672, 932, 935, 1223
Bse118I RCCGGY 3 cut(s) 422, 453, 488
Bse1I ACTGG 5 cut(s) 175, 962, 1217, 1225, 1336
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 4 cut(s) 265, 336, 933, 971
BseDI CCNNGG 7 cut(s) 72, 181, 335, 458, 880, 931, 1010
BseGI GGATG 2 cut(s) 307, 1068
BseLI CCNNNNNNNGG 8 cut(s) 187, 270, 367, 478, 672, 932, 935, 1223
BseMII CTCAG 3 cut(s) 61, 463, 670
BseNI ACTGG 5 cut(s) 175, 962, 1217, 1225, 1336
BseSI GKGCMC 1 cut(s) 612
BseYI CCCAGC 2 cut(s) 905, 1138
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 9 cut(s) 174, 186, 419, 457, 610, 924, 974, 1015, 1216
BshNI GGYRCC 1 cut(s) 23
BsiSI CCGG 8 cut(s) 183, 188, 423, 454, 479, 489, 822, 882
BslFI GGGAC 3 cut(s) 328, 455, 924
BslI CCNNNNNNNGG 8 cut(s) 187, 270, 367, 478, 672, 932, 935, 1223
BsmAI GTCTC 4 cut(s) 56, 277, 389, 922
BsmFI GGGAC 3 cut(s) 328, 455, 924
BsmI GAATGC 3 cut(s) 699, 885, 1271
BsnI GGCC 9 cut(s) 174, 186, 419, 457, 610, 924, 974, 1015, 1216
Bsp119I TTCGAA 1 cut(s) 105
Bsp120I GGGCCC 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 612, 1031
Bsp13I TCCGGA 1 cut(s) 478
Bsp1407I TGTACA 1 cut(s) 775
Bsp143I GATC 6 cut(s) 88, 273, 370, 481, 556, 814
BspANI GGCC 9 cut(s) 174, 186, 419, 457, 610, 924, 974, 1015, 1216
BspCNI CTCAG 3 cut(s) 60, 462, 669
BspEI TCCGGA 1 cut(s) 478
BspFNI CGCG 1 cut(s) 606
BspLI GGNNCC 5 cut(s) 25, 275, 344, 483, 610
BspPI GGATC 6 cut(s) 83, 268, 281, 378, 476, 489
BspT104I TTCGAA 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 23
BsrBI CCGCTC 2 cut(s) 139, 978
BsrFI RCCGGY 3 cut(s) 422, 453, 488
BsrGI TGTACA 1 cut(s) 775
BsrI ACTGG 5 cut(s) 175, 962, 1217, 1225, 1336
BssAI RCCGGY 3 cut(s) 422, 453, 488
BssECI CCNNGG 7 cut(s) 72, 181, 335, 458, 880, 931, 1010
BssMI GATC 6 cut(s) 88, 273, 370, 481, 556, 814
BssT1I CCWWGG 2 cut(s) 458, 1010
Bst2UI CCWGG 4 cut(s) 265, 336, 933, 971
Bst4CI ACNGT 3 cut(s) 98, 502, 1124
BstAPI GCANNNNNTGC 1 cut(s) 1082
BstAUI TGTACA 1 cut(s) 775
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 6 cut(s) 455, 608, 976, 1103, 1161, 1319
BstDEI CTNAG 5 cut(s) 13, 47, 449, 656, 1054
BstDSI CCRYGG 1 cut(s) 72
BstEII GGTNACC 2 cut(s) 76, 1331
BstF5I GGATG 2 cut(s) 307, 1068
BstFNI CGCG 1 cut(s) 606
BstH2I RGCGCY 1 cut(s) 906
BstHHI GCGC 1 cut(s) 905
BstKTI GATC 6 cut(s) 91, 276, 373, 484, 559, 817
BstMAI GTCTC 4 cut(s) 56, 277, 389, 922
BstMBI GATC 6 cut(s) 88, 273, 370, 481, 556, 814
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 1082
BstNI CCWGG 4 cut(s) 265, 336, 933, 971
BstPI GGTNACC 2 cut(s) 76, 1331
BstSCI CCNGG 8 cut(s) 181, 186, 263, 334, 820, 880, 931, 969
BstSLI GKGCMC 1 cut(s) 612
BstUI CGCG 1 cut(s) 606
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 3 cut(s) 88, 273, 481
BstYI RGATCY 3 cut(s) 88, 273, 481
BsuRI GGCC 9 cut(s) 174, 186, 419, 457, 610, 924, 974, 1015, 1216
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 2 cut(s) 307, 1068
BtsI GCAGTG 2 cut(s) 35, 54
BtsIMutI CAGTG 4 cut(s) 35, 54, 1102, 1129
Cac8I GCNNGC 6 cut(s) 455, 608, 976, 1103, 1161, 1319
CfoI GCGC 1 cut(s) 905
Cfr10I RCCGGY 3 cut(s) 422, 453, 488
Cfr13I GGNCC 8 cut(s) 185, 608, 609, 923, 938, 973, 987, 1007
Csp6I GTAC 1 cut(s) 776
CviAII CATG 1 cut(s) 827
CviQI GTAC 1 cut(s) 776
DdeI CTNAG 5 cut(s) 13, 47, 449, 656, 1054
DpnI GATC 6 cut(s) 90, 275, 372, 483, 558, 816
DpnII GATC 6 cut(s) 88, 273, 370, 481, 556, 814
DraI TTTAAA 1 cut(s) 966
EaeI YGGCCR 2 cut(s) 172, 455
Eco130I CCWWGG 2 cut(s) 458, 1010
Eco24I GRGCYC 2 cut(s) 612, 1031
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 3 cut(s) 938, 987, 1007
Eco57I CTGAAG 1 cut(s) 105
Eco91I GGTNACC 2 cut(s) 76, 1331
EcoO65I GGTNACC 2 cut(s) 76, 1331
EcoRI GAATTC 1 cut(s) 444
EcoRII CCWGG 4 cut(s) 263, 334, 931, 969
EcoRV GATATC 1 cut(s) 663
EcoT14I CCWWGG 2 cut(s) 458, 1010
EcoT38I GRGCYC 2 cut(s) 612, 1031
ErhI CCWWGG 2 cut(s) 458, 1010
FaeI CATG 1 cut(s) 830
FalI AAGNNNNNCTT 2 cut(s) 537, 569
FaqI GGGAC 3 cut(s) 328, 455, 924
FatI CATG 1 cut(s) 826
FauI CCCGC 5 cut(s) 10, 144, 493, 599, 983
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 3 cut(s) 5, 420, 901
FokI GGATG 2 cut(s) 314, 1055
FriOI GRGCYC 2 cut(s) 612, 1031
Fsp4HI GCNGC 3 cut(s) 5, 420, 901
FspBI CTAG 3 cut(s) 803, 1073, 1238
GlaI GCGC 1 cut(s) 904
GluI GCNGC 3 cut(s) 5, 420, 901
GsaI CCCAGC 2 cut(s) 909, 1142
HaeII RGCGCY 1 cut(s) 906
HaeIII GGCC 9 cut(s) 174, 186, 419, 457, 610, 924, 974, 1015, 1216
HapII CCGG 8 cut(s) 183, 188, 423, 454, 479, 489, 822, 882
HhaI GCGC 1 cut(s) 905
Hin1II CATG 1 cut(s) 830
Hin6I GCGC 1 cut(s) 903
HinP1I GCGC 1 cut(s) 903
HindIII AAGCTT 1 cut(s) 1157
HinfI GANTC 4 cut(s) 463, 588, 868, 1044
HpaII CCGG 8 cut(s) 183, 188, 423, 454, 479, 489, 822, 882
HphI GGTGA 3 cut(s) 490, 503, 865
Hpy166II GTNNAC 4 cut(s) 778, 938, 1007, 1120
Hpy188I TCNGA 5 cut(s) 375, 434, 867, 1210, 1314
Hpy188III TCNNGA 7 cut(s) 299, 479, 554, 658, 770, 1238, 1325
Hpy8I GTNNAC 4 cut(s) 778, 938, 1007, 1120
Hpy99I CGWCG 1 cut(s) 674
HpyAV CCTTC 4 cut(s) 361, 408, 728, 1175
HpyCH4III ACNGT 3 cut(s) 98, 502, 1124
HpyCH4IV ACGT 2 cut(s) 669, 780
HpyCH4V TGCA 2 cut(s) 407, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 1082
HpyF3I CTNAG 5 cut(s) 13, 47, 449, 656, 1054
HpySE526I ACGT 2 cut(s) 669, 780
Hsp92II CATG 1 cut(s) 830
HspAI GCGC 1 cut(s) 903
Kpn2I TCCGGA 1 cut(s) 478
KroI GCCGGC 1 cut(s) 453
KroNI GCCGGC 1 cut(s) 455
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 6 cut(s) 88, 273, 370, 481, 556, 814
LweI GCATC 2 cut(s) 1212, 1330
MaeI CTAG 3 cut(s) 803, 1073, 1238
MaeII ACGT 2 cut(s) 669, 780
MaeIII GTNAC 6 cut(s) 76, 115, 202, 491, 805, 1331
MalI GATC 6 cut(s) 90, 275, 372, 483, 558, 816
MbiI CCGCTC 2 cut(s) 139, 978
MboI GATC 6 cut(s) 88, 273, 370, 481, 556, 814
MboII GAAGA 5 cut(s) 94, 98, 223, 881, 1313
MflI RGATCY 3 cut(s) 88, 273, 481
MhlI GDGCHC 2 cut(s) 612, 1031
MluCI AATT 6 cut(s) 289, 327, 444, 951, 1176, 1281
MlyI GAGTC 1 cut(s) 1038
MmeI TCCRAC 4 cut(s) 301, 690, 1177, 1233
MnlI CCTC 7 cut(s) 14, 56, 227, 333, 428, 758, 859
MroI TCCGGA 1 cut(s) 478
MroNI GCCGGC 1 cut(s) 453
MseI TTAA 1 cut(s) 965
MslI CAYNNNNRTG 2 cut(s) 40, 1326
MspA1I CMGCKG 3 cut(s) 83, 812, 900
MspI CCGG 8 cut(s) 183, 188, 423, 454, 479, 489, 822, 882
MspR9I CCNGG 8 cut(s) 183, 188, 265, 336, 822, 882, 933, 971
Mva1269I GAATGC 3 cut(s) 699, 885, 1271
MvaI CCWGG 4 cut(s) 265, 336, 933, 971
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 1082
NaeI GCCGGC 1 cut(s) 455
NciI CCSGG 4 cut(s) 183, 188, 822, 882
NdeII GATC 6 cut(s) 88, 273, 370, 481, 556, 814
NgoMIV GCCGGC 1 cut(s) 453
NlaIII CATG 1 cut(s) 830
NlaIV GGNNCC 5 cut(s) 25, 275, 344, 483, 610
NmuCI GTSAC 2 cut(s) 115, 491
NspV TTCGAA 1 cut(s) 105
PctI GAATGC 3 cut(s) 699, 885, 1271
PdiI GCCGGC 1 cut(s) 455
PfeI GAWTC 3 cut(s) 463, 588, 868
PflMI CCANNNNNTGG 1 cut(s) 932
PfoI TCCNGGA 1 cut(s) 263
PkrI GCNGC 3 cut(s) 6, 421, 902
PleI GAGTC 1 cut(s) 1038
PpsI GAGTC 1 cut(s) 1038
Psp6I CCWGG 4 cut(s) 263, 334, 931, 969
PspEI GGTNACC 2 cut(s) 76, 1331
PspFI CCCAGC 2 cut(s) 905, 1138
PspGI CCWGG 4 cut(s) 263, 334, 931, 969
PspN4I GGNNCC 5 cut(s) 25, 275, 344, 483, 610
PspOMI GGGCCC 1 cut(s) 608
PspPI GGNCC 8 cut(s) 185, 608, 609, 923, 938, 973, 987, 1007
PsrI GAACNNNNNNTAC 2 cut(s) 335, 367
PsuI RGATCY 3 cut(s) 88, 273, 481
PvuII CAGCTG 1 cut(s) 812
RsaI GTAC 1 cut(s) 777
RsaNI GTAC 1 cut(s) 776
RseI CAYNNNNRTG 2 cut(s) 40, 1326
SaqAI TTAA 1 cut(s) 965
SatI GCNGC 3 cut(s) 5, 420, 901
Sau3AI GATC 6 cut(s) 88, 273, 370, 481, 556, 814
Sau96I GGNCC 8 cut(s) 185, 608, 609, 923, 938, 973, 987, 1007
SchI GAGTC 1 cut(s) 1038
ScrFI CCNGG 8 cut(s) 183, 188, 265, 336, 822, 882, 933, 971
SduI GDGCHC 2 cut(s) 612, 1031
SfaNI GCATC 2 cut(s) 1212, 1330
SfuI TTCGAA 1 cut(s) 105
SgrAI CRCCGGYG 2 cut(s) 422, 488
SinI GGWCC 3 cut(s) 938, 987, 1007
SmiMI CAYNNNNRTG 2 cut(s) 40, 1326
Sse9I AATT 6 cut(s) 289, 327, 444, 951, 1176, 1281
SspMI CTAG 3 cut(s) 803, 1073, 1238
StyD4I CCNGG 8 cut(s) 181, 186, 263, 334, 820, 880, 931, 969
StyI CCWWGG 2 cut(s) 458, 1010
TaaI ACNGT 3 cut(s) 98, 502, 1124
TaiI ACGT 2 cut(s) 672, 783
TaqI TCGA 1 cut(s) 105
TasI AATT 6 cut(s) 289, 327, 444, 951, 1176, 1281
TatI WGTACW 1 cut(s) 775
TauI GCSGC 3 cut(s) 7, 422, 903
TfiI GAWTC 3 cut(s) 463, 588, 868
Tru1I TTAA 1 cut(s) 965
Tru9I TTAA 1 cut(s) 965
TscAI CASTG 4 cut(s) 42, 61, 1102, 1129
TseFI GTSAC 2 cut(s) 115, 491
Tsp45I GTSAC 2 cut(s) 115, 491
TspDTI ATGAA 4 cut(s) 282, 731, 881, 1314
TspGWI ACGGA 4 cut(s) 61, 190, 551, 1181
TspRI CASTG 4 cut(s) 42, 61, 1102, 1129
Van91I CCANNNNNTGG 1 cut(s) 932
VpaK11BI GGWCC 3 cut(s) 938, 987, 1007
XapI RAATTY 1 cut(s) 444
XbaI TCTAGA 1 cut(s) 1237
XspI CTAG 3 cut(s) 803, 1073, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.