Rmu_ssc0000311.1_g000015

SPRY domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000311.1
OG0020057
Physical Location & Seq
Reverse (-)
66401 .. 67042
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000311.1_g000015.1.cds

Sequence Viewer

Length: 642 bp
atggacaatctccaatccaattacatggacgaagacgaggaagaagacgaacaatccaaaaccaccaccgccgccgccgtcgcaatgaccgagctcgttgagcccacgacgacaacggagcccgcaaacgacgacgagcccaattcggagcccatgattaacccaccgcccaccgacccgctcaacggcaacaaaaccgagacggaagcctccgaagacctctccgagtccgtcaaatccctcgaaaacgacgtcgacggcgacatcgaagacgaagacccgcatcccaagaagcaaaagcagctctcttctctcaccgccattgccccggcggcggcgaccaccccgcccggttcttcggacccggaccaggcccagttgccccaacccgcacccgaagccaacggcaactgccccggcggcggcggcgaccaccccgcccggttcttcggacccggaccaggcccagttgccccaacccgcacccgaagccaacggcaacggcaacggcgctctcctcctcccggcgcaaccgtccaagaagtccaccaagaagaagaacaacaatgtgtgggtcaccaagtcgacccggaaagggaagaagaagaccaagcccagcaccaacaacaacgcccccggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0002376 GO:0002520 GO:0002682 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008284 GO:0008757 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018130 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0022607 GO:0030097 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0034968 GO:0035097 GO:0036211 GO:0042054 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045595 GO:0045637 GO:0045652 GO:0046483 GO:0048188 GO:0048316 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048522 GO:0048534 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0051716 GO:0060255 GO:0060776 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1903506 GO:1903706 GO:1904837 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04212 ko04934 map04212 map04934
Pfam Domains
Protein Families
SPRY

Protein Analysis

213

Amino Acids

23.08

Weight (kDa)

4.25

Isoelectric Point (pI)

80.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020057)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0010661.1_g000007 Rmu_ssc0000311.1_g000015
rosa_roxburghii Rroxscaffold_3G00233760
rosa_rugosa Rorug07G0249300.1
rosa_samantha Rh3BG290800 Rh4BG148200 Rh7CG420800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 181
AccI GTMKAC 2 cut(s) 255, 585
AcyI GRCGYC 1 cut(s) 252
AfiI CCNNNNNNNGG 7 cut(s) 185, 334, 370, 422, 461, 524, 595
AjnI CCWGG 2 cut(s) 369, 460
AluBI AGCT 2 cut(s) 94, 304
AluI AGCT 2 cut(s) 94, 304
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 194
AoxI GGCC 2 cut(s) 372, 463
ApeKI GCWGC 1 cut(s) 301
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AspLEI GCGC 2 cut(s) 513, 530
AspS9I GGNCC 6 cut(s) 361, 367, 373, 452, 458, 464
AsuC2I CCSGG 9 cut(s) 329, 351, 365, 417, 442, 456, 525, 590, 637
AsuHPI GGTGA 2 cut(s) 307, 569
AvaII GGWCC 4 cut(s) 361, 367, 452, 458
BanII GRGCYC 5 cut(s) 96, 105, 123, 141, 153
BbsI GAAGAC 6 cut(s) 39, 51, 222, 276, 282, 612
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 313
BceAI ACGGC 7 cut(s) 62, 202, 274, 421, 512, 518, 524
BciT130I CCWGG 2 cut(s) 371, 462
BcnI CCSGG 9 cut(s) 329, 351, 365, 417, 442, 456, 525, 590, 637
BcoDI GTCTC 1 cut(s) 194
BfoI RGCGCY 1 cut(s) 514
BglI GCCNNNNNGGC 2 cut(s) 332, 420
BisI GCNGC 8 cut(s) 72, 75, 302, 333, 336, 421, 424, 427
BlsI GCNGC 8 cut(s) 73, 76, 303, 334, 337, 422, 425, 428
Bme18I GGWCC 4 cut(s) 361, 367, 452, 458
BmgT120I GGNCC 6 cut(s) 361, 367, 373, 452, 458, 464
BmiI GGNNCC 4 cut(s) 120, 150, 363, 454
BmrI ACTGGG 2 cut(s) 370, 461
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 2 cut(s) 370, 461
BpiI GAAGAC 6 cut(s) 39, 51, 222, 276, 282, 612
BpuMI CCSGG 9 cut(s) 329, 351, 365, 417, 442, 456, 525, 590, 637
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 327, 415, 635
Bsc4I CCNNNNNNNGG 7 cut(s) 185, 334, 370, 422, 461, 524, 595
Bse1I ACTGG 2 cut(s) 376, 467
Bse3DI GCAATG 2 cut(s) 90, 321
BseBI CCWGG 2 cut(s) 371, 462
BseDI CCNNGG 3 cut(s) 327, 415, 635
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 7 cut(s) 185, 334, 370, 422, 461, 524, 595
BseMI GCAATG 2 cut(s) 90, 321
BseNI ACTGG 2 cut(s) 376, 467
BseRI GAGGAG 2 cut(s) 507, 510
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 615
BshFI GGCC 2 cut(s) 374, 465
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 9 cut(s) 329, 351, 365, 417, 442, 456, 525, 590, 637
BslI CCNNNNNNNGG 7 cut(s) 185, 334, 370, 422, 461, 524, 595
BsmAI GTCTC 1 cut(s) 194
BsmBI CGTCTC 1 cut(s) 194
BsnI GGCC 2 cut(s) 374, 465
Bsp1286I GDGCHC 5 cut(s) 96, 105, 123, 141, 153
BspANI GGCC 2 cut(s) 374, 465
BspLI GGNNCC 4 cut(s) 120, 150, 363, 454
BsrBI CCGCTC 1 cut(s) 181
BsrDI GCAATG 2 cut(s) 90, 321
BsrI ACTGG 2 cut(s) 376, 467
BssECI CCNNGG 3 cut(s) 327, 415, 635
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 371, 462
Bst4CI ACNGT 1 cut(s) 535
Bst6I CTCTTC 1 cut(s) 313
BstACI GRCGYC 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 123
BstEII GGTNACC 1 cut(s) 575
BstF5I GGATG 1 cut(s) 283
BstH2I RGCGCY 1 cut(s) 514
BstHHI GCGC 2 cut(s) 513, 530
BstMAI GTCTC 1 cut(s) 194
BstMWI GCNNNNNNNGC 8 cut(s) 80, 100, 301, 332, 398, 420, 426, 489
BstNI CCWGG 2 cut(s) 371, 462
BstPI GGTNACC 1 cut(s) 575
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 6 cut(s) 39, 51, 222, 276, 282, 612
BstXI CCANNNNNNTGG 1 cut(s) 25
BsuRI GGCC 2 cut(s) 374, 465
BtsCI GGATG 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 123
CfoI GCGC 2 cut(s) 513, 530
Cfr13I GGNCC 6 cut(s) 361, 367, 373, 452, 458, 464
CviAII CATG 2 cut(s) 25, 154
Eam1104I CTCTTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 313
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 5 cut(s) 96, 105, 123, 141, 153
Eco47I GGWCC 4 cut(s) 361, 367, 452, 458
Eco53kI GAGCTC 1 cut(s) 94
Eco91I GGTNACC 1 cut(s) 575
EcoICRI GAGCTC 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 369, 460
EcoT38I GRGCYC 5 cut(s) 96, 105, 123, 141, 153
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 2 cut(s) 28, 157
FaiI YATR 2 cut(s) 26, 155
FatI CATG 2 cut(s) 24, 153
FauI CCCGC 7 cut(s) 130, 186, 288, 354, 397, 445, 488
FblI GTMKAC 2 cut(s) 255, 585
Fnu4HI GCNGC 8 cut(s) 72, 75, 302, 333, 336, 421, 424, 427
FokI GGATG 1 cut(s) 270
FriOI GRGCYC 5 cut(s) 96, 105, 123, 141, 153
Fsp4HI GCNGC 8 cut(s) 72, 75, 302, 333, 336, 421, 424, 427
GlaI GCGC 2 cut(s) 512, 529
GluI GCNGC 8 cut(s) 72, 75, 302, 333, 336, 421, 424, 427
GsaI CCCAGC 1 cut(s) 619
HaeII RGCGCY 1 cut(s) 514
HaeIII GGCC 2 cut(s) 374, 465
HapII CCGG 9 cut(s) 329, 351, 365, 417, 442, 456, 525, 590, 637
HhaI GCGC 2 cut(s) 513, 530
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 2 cut(s) 28, 157
Hin6I GCGC 2 cut(s) 511, 528
HinP1I GCGC 2 cut(s) 511, 528
HincII GTYRAC 2 cut(s) 256, 586
HindII GTYRAC 2 cut(s) 256, 586
HinfI GANTC 1 cut(s) 227
HpaII CCGG 9 cut(s) 329, 351, 365, 417, 442, 456, 525, 590, 637
HphI GGTGA 2 cut(s) 307, 569
Hpy166II GTNNAC 3 cut(s) 256, 547, 586
Hpy188I TCNGA 5 cut(s) 148, 214, 226, 361, 452
Hpy8I GTNNAC 3 cut(s) 256, 547, 586
Hpy99I CGWCG 7 cut(s) 83, 112, 134, 137, 254, 257, 260
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 8 cut(s) 80, 100, 301, 332, 398, 420, 426, 489
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 2 cut(s) 28, 157
HspAI GCGC 2 cut(s) 511, 528
LmnI GCTCC 2 cut(s) 118, 148
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 292
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 575
MbiI CCGCTC 1 cut(s) 181
MhlI GDGCHC 5 cut(s) 96, 105, 123, 141, 153
MluCI AATT 2 cut(s) 19, 142
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 6 cut(s) 31, 220, 230, 251, 528, 531
MseI TTAA 1 cut(s) 159
MspI CCGG 9 cut(s) 329, 351, 365, 417, 442, 456, 525, 590, 637
MvaI CCWGG 2 cut(s) 371, 462
MwoI GCNNNNNNNGC 8 cut(s) 80, 100, 301, 332, 398, 420, 426, 489
NciI CCSGG 9 cut(s) 329, 351, 365, 417, 442, 456, 525, 590, 637
NlaIII CATG 2 cut(s) 28, 157
NlaIV GGNNCC 4 cut(s) 120, 150, 363, 454
NmuCI GTSAC 1 cut(s) 575
PcsI WCGNNNNNNNCGW 4 cut(s) 87, 249, 258, 264
PkrI GCNGC 8 cut(s) 73, 76, 303, 334, 337, 422, 425, 428
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 369, 460
PspEI GGTNACC 1 cut(s) 575
PspFI CCCAGC 1 cut(s) 615
PspGI CCWGG 2 cut(s) 369, 460
PspN4I GGNNCC 4 cut(s) 120, 150, 363, 454
PspPI GGNCC 6 cut(s) 361, 367, 373, 452, 458, 464
SacI GAGCTC 1 cut(s) 96
SalI GTCGAC 2 cut(s) 254, 584
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 8 cut(s) 72, 75, 302, 333, 336, 421, 424, 427
Sau96I GGNCC 6 cut(s) 361, 367, 373, 452, 458, 464
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 5 cut(s) 96, 105, 123, 141, 153
SetI ASST 4 cut(s) 96, 222, 255, 306
SfaNI GCATC 1 cut(s) 292
SgrDI CGTCGACG 1 cut(s) 254
SinI GGWCC 4 cut(s) 361, 367, 452, 458
Sse9I AATT 2 cut(s) 19, 142
SstI GAGCTC 1 cut(s) 96
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 1 cut(s) 255
TaqI TCGA 4 cut(s) 243, 255, 267, 585
TaqII GACCGA 1 cut(s) 104
TasI AATT 2 cut(s) 19, 142
TauI GCSGC 7 cut(s) 74, 77, 335, 338, 423, 426, 429
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 575
TspGWI ACGGA 3 cut(s) 131, 218, 220
VpaK11BI GGWCC 4 cut(s) 361, 367, 452, 458
XmiI GTMKAC 2 cut(s) 255, 585
ZraI GACGTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.