Rh4BG148200

SPRY domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
26520951 .. 26558662
37712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG148200.1

Sequence Viewer

Length: 468 bp
ATGGAAGAAGACGAACAATCAAAAACCACCACTGTCGCTGCCGTCGCAATCACCGAGCTCATTGATCCCACGACGATGAAGGAGCCCGCAAACGACGACGAGCCCAATATGGAGGCCATTAATCCAGCAGCCATCGACCCGCATAACGGCAACAAAACCGAGACCAAAGCCTCCGAAGATCTCTTCGAGTCCGTCAAATCCCTAGCAGCGATTTTGGTTGGGCTAAAAGGAGAAGCCATGAATCTCGGTTCCCCAACTTCCACCTCTATCTGCAGTGAATTGGAGGAGGGTGTTTATAGGGACACAAAATCAACAGCCACTGACTTGGATCCATTAAAGTATGAAATATCATTGCTGCCTGGCTATCTACATGTGGCTATCTACATGTGGAATTTGTTGGTGACCTGTGATGAAGAAATGTATATAAATCACTTCGGTGTTATGCTTAGCTTGTTATTTTGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0002376 GO:0002520 GO:0002682 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008284 GO:0008757 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018130 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0022607 GO:0030097 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0034968 GO:0035097 GO:0036211 GO:0042054 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045595 GO:0045637 GO:0045652 GO:0046483 GO:0048188 GO:0048316 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048522 GO:0048534 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0051716 GO:0060255 GO:0060776 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1903506 GO:1903706 GO:1904837 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.07

Weight (kDa)

4.21

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020057)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 87, 140
AclWI GGATC 3 cut(s) 59, 323, 336
AcsI RAATTY 1 cut(s) 391
AfiI CCNNNNNNNGG 1 cut(s) 146
AflIII ACRYGT 2 cut(s) 370, 384
AjnI CCWGG 1 cut(s) 358
AleI CACNNNNGTG 1 cut(s) 435
AluBI AGCT 2 cut(s) 58, 450
AluI AGCT 2 cut(s) 58, 450
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 3 cut(s) 59, 323, 336
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 4 cut(s) 38, 128, 206, 355
ApoI RAATTY 1 cut(s) 391
AseI ATTAAT 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 43, 412
BamHI GGATCC 1 cut(s) 328
BanII GRGCYC 3 cut(s) 60, 87, 105
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 4 cut(s) 25, 140, 218, 342
BccI CCATC 1 cut(s) 140
BceAI ACGGC 2 cut(s) 26, 163
BciT130I CCWGG 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 271
BglII AGATCT 1 cut(s) 178
BisI GCNGC 4 cut(s) 39, 129, 207, 356
BlpI GCTNAGC 1 cut(s) 446
BlsI GCNGC 4 cut(s) 40, 130, 208, 357
Bme1390I CCNGG 1 cut(s) 360
BmiI GGNNCC 3 cut(s) 84, 250, 330
BmrFI CCNGG 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 15
Bpu1102I GCTNAGC 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 4 cut(s) 25, 140, 218, 342
BshFI GGCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 60
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 3 cut(s) 60, 87, 105
Bsp143I GATC 3 cut(s) 64, 178, 328
Bsp1720I GCTNAGC 1 cut(s) 446
BspACI CCGC 2 cut(s) 87, 140
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 3 cut(s) 84, 250, 330
BspMAI CTGCAG 1 cut(s) 275
BspPI GGATC 3 cut(s) 59, 323, 336
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 350
BssMI GATC 3 cut(s) 64, 178, 328
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 446
BstEII GGTNACC 1 cut(s) 400
BstKTI GATC 3 cut(s) 67, 181, 331
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 3 cut(s) 64, 178, 328
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 360
BstNSI RCATGY 2 cut(s) 374, 388
BstPI GGTNACC 1 cut(s) 400
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 271
BstV1I GCAGC 4 cut(s) 25, 140, 218, 342
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 2 cut(s) 178, 328
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 2 cut(s) 178, 328
BsuRI GGCC 1 cut(s) 116
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 3 cut(s) 30, 280, 318
Cac8I GCNNGC 1 cut(s) 87
CaiI CAGNNNCTG 1 cut(s) 320
CviAII CATG 3 cut(s) 238, 371, 385
DdeI CTNAG 1 cut(s) 446
DpnI GATC 3 cut(s) 66, 180, 330
DpnII GATC 3 cut(s) 64, 178, 328
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 58
Eco24I GRGCYC 3 cut(s) 60, 87, 105
Eco31I GGTCTC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 58
Eco91I GGTNACC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 58
EcoO65I GGTNACC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 358
EcoT38I GRGCYC 3 cut(s) 60, 87, 105
FaeI CATG 3 cut(s) 241, 374, 388
FaqI GGGAC 1 cut(s) 314
FatI CATG 3 cut(s) 237, 370, 384
FauI CCCGC 2 cut(s) 94, 147
Fnu4HI GCNGC 4 cut(s) 39, 129, 207, 356
FriOI GRGCYC 3 cut(s) 60, 87, 105
Fsp4HI GCNGC 4 cut(s) 39, 129, 207, 356
FspBI CTAG 1 cut(s) 203
GluI GCNGC 4 cut(s) 39, 129, 207, 356
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 3 cut(s) 241, 374, 388
HinfI GANTC 2 cut(s) 188, 241
HphI GGTGA 2 cut(s) 43, 412
Hpy188I TCNGA 1 cut(s) 175
Hpy99I CGWCG 4 cut(s) 47, 76, 98, 101
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 446
Hsp92II CATG 3 cut(s) 241, 374, 388
Kzo9I GATC 3 cut(s) 64, 178, 328
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 4 cut(s) 138, 345, 372, 418
Lsp1109I GCAGC 4 cut(s) 25, 140, 218, 342
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 400
MalI GATC 3 cut(s) 66, 180, 330
MboI GATC 3 cut(s) 64, 178, 328
MboII GAAGA 5 cut(s) 17, 20, 175, 188, 425
MflI RGATCY 2 cut(s) 178, 328
MhlI GDGCHC 3 cut(s) 60, 87, 105
MluCI AATT 2 cut(s) 278, 391
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 5 cut(s) 106, 181, 274, 277, 280
MseI TTAA 2 cut(s) 120, 335
MslI CAYNNNNRTG 2 cut(s) 74, 435
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 3 cut(s) 64, 178, 328
NlaIII CATG 3 cut(s) 241, 374, 388
NlaIV GGNNCC 3 cut(s) 84, 250, 330
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 2 cut(s) 374, 388
OliI CACNNNNGTG 1 cut(s) 435
PciI ACATGT 2 cut(s) 370, 384
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 4 cut(s) 40, 130, 208, 357
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PscI ACATGT 2 cut(s) 370, 384
PshBI ATTAAT 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 358
PspEI GGTNACC 1 cut(s) 400
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 3 cut(s) 84, 250, 330
PstI CTGCAG 1 cut(s) 275
PstNI CAGNNNCTG 1 cut(s) 320
PsuI RGATCY 2 cut(s) 178, 328
RseI CAYNNNNRTG 2 cut(s) 74, 435
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 120, 335
SatI GCNGC 4 cut(s) 39, 129, 207, 356
Sau3AI GATC 3 cut(s) 64, 178, 328
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 3 cut(s) 60, 87, 105
SetI ASST 4 cut(s) 60, 266, 407, 452
SfcI CTRYAG 1 cut(s) 271
SmiMI CAYNNNNRTG 2 cut(s) 74, 435
Sse9I AATT 2 cut(s) 278, 391
SsiI CCGC 2 cut(s) 87, 140
SspMI CTAG 1 cut(s) 203
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 135, 186
TasI AATT 2 cut(s) 278, 391
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 2 cut(s) 120, 335
Tru9I TTAA 2 cut(s) 120, 335
TscAI CASTG 3 cut(s) 37, 280, 325
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 4 cut(s) 38, 128, 206, 355
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 4 cut(s) 92, 254, 357, 426
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 3 cut(s) 37, 280, 325
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 1 cut(s) 391
XceI RCATGY 2 cut(s) 374, 388
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.