Rroxscaffold_3G00233760

SPRY domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
20015644 .. 20033693
18050 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00233760.1

Sequence Viewer

Length: 336 bp
ATGAAAGAGCCCGCATACGACGACGAGCCTAATATGGAGGCCATTAATCCAGCAACCATCGACCCGCATAATGGCAACAAAACCGAGACCGAAGCCTCTGAAGATCTCTTCGAGTCCGTCAAATCCCTAGCAGCGATTTTGGTGGGACGGACGGCGGATGATATCCGTCGATTGATGCCGGATGAAGGAAAGGGATTGAATCTTTCGGACGGAAGAAAAGGATCCGAGAGAGAAGGATTGAAGATCGGTGAAGGGAAAGGTGAAGAGATTGAGGAGAGAAAGGCCGAAGGGTTTGAGAGAGAAGGATGTGATATTACTACAATTTCTATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0002376 GO:0002520 GO:0002682 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008284 GO:0008757 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018130 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0022607 GO:0030097 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0034968 GO:0035097 GO:0036211 GO:0042054 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045595 GO:0045637 GO:0045652 GO:0046483 GO:0048188 GO:0048316 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048522 GO:0048534 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0051716 GO:0060255 GO:0060776 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1903506 GO:1903706 GO:1904837 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.11

Weight (kDa)

4.49

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020057)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 12, 65, 155
AclWI GGATC 2 cut(s) 216, 229
AcuI CTGAAG 1 cut(s) 120
AfiI CCNNNNNNNGG 2 cut(s) 71, 185
AgsI TTSAA 2 cut(s) 199, 241
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 2 cut(s) 216, 229
AoxI GGCC 2 cut(s) 39, 282
ApeKI GCWGC 1 cut(s) 131
AseI ATTAAT 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 260, 272
BamHI GGATCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 128
BglII AGATCT 1 cut(s) 103
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 223
BmsI GCATC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 185
BseGI GGATG 3 cut(s) 163, 187, 311
BseLI CCNNNNNNNGG 2 cut(s) 71, 185
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 143
BshFI GGCC 2 cut(s) 41, 284
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 71, 185
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 2 cut(s) 41, 284
Bso31I GGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 103, 221, 243
BspACI CCGC 3 cut(s) 12, 65, 155
BspANI GGCC 2 cut(s) 41, 284
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 2 cut(s) 216, 229
BspTNI GGTCTC 1 cut(s) 80
BssMI GATC 3 cut(s) 103, 221, 243
Bst6I CTCTTC 2 cut(s) 113, 258
BstC8I GCNNGC 1 cut(s) 12
BstF5I GGATG 3 cut(s) 163, 187, 311
BstKTI GATC 3 cut(s) 106, 224, 246
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 3 cut(s) 103, 221, 243
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 103, 221
BstYI RGATCY 2 cut(s) 103, 221
BsuRI GGCC 2 cut(s) 41, 284
BtsCI GGATG 3 cut(s) 163, 187, 311
Cac8I GCNNGC 1 cut(s) 12
CviJI RGCY 5 cut(s) 10, 28, 41, 95, 284
CviKI_1 RGCY 5 cut(s) 10, 28, 41, 95, 284
DpnI GATC 3 cut(s) 105, 223, 245
DpnII GATC 3 cut(s) 103, 221, 243
Eam1104I CTCTTC 2 cut(s) 113, 258
EarI CTCTTC 2 cut(s) 113, 258
EciI GGCGGA 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 80
Eco32I GATATC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 120
EcoRV GATATC 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 12
FaiI YATR 3 cut(s) 16, 35, 69
FaqI GGGAC 1 cut(s) 159
FauI CCCGC 2 cut(s) 19, 72
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 3 cut(s) 170, 194, 318
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 128
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 2 cut(s) 41, 284
HapII CCGG 1 cut(s) 179
HinfI GANTC 2 cut(s) 113, 199
HpaII CCGG 1 cut(s) 179
HphI GGTGA 2 cut(s) 260, 272
Hpy188I TCNGA 3 cut(s) 100, 208, 226
Hpy99I CGWCG 3 cut(s) 23, 26, 171
HpyAV CCTTC 5 cut(s) 179, 227, 245, 281, 296
Kzo9I GATC 3 cut(s) 103, 221, 243
LpnPI CCDG 2 cut(s) 63, 192
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 128
MalI GATC 3 cut(s) 105, 223, 245
MboI GATC 3 cut(s) 103, 221, 243
MboII GAAGA 5 cut(s) 100, 113, 225, 253, 275
MflI RGATCY 2 cut(s) 103, 221
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 1 cut(s) 321
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 3 cut(s) 31, 106, 265
MseI TTAA 1 cut(s) 45
MspI CCGG 1 cut(s) 179
NdeII GATC 3 cut(s) 103, 221, 243
NlaIV GGNNCC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PshBI ATTAAT 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 223
PsuI RGATCY 2 cut(s) 103, 221
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 3 cut(s) 103, 221, 243
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 12
SetI ASST 1 cut(s) 262
SfaNI GCATC 1 cut(s) 165
SgeI CNNG 9 cut(s) 23, 37, 62, 76, 97, 124, 140, 191, 238
Sse9I AATT 1 cut(s) 321
SsiI CCGC 3 cut(s) 12, 65, 155
SspMI CTAG 1 cut(s) 128
TaqI TCGA 3 cut(s) 60, 111, 169
TaqII GACCGA 1 cut(s) 104
TasI AATT 1 cut(s) 321
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 17, 198
TspGWI ACGGA 4 cut(s) 106, 155, 163, 225
VspI ATTAAT 1 cut(s) 45
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.