Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000410.1

Orthogroup ID

OG0020058

Physical Location & Seq

Genomic Coordinates Reverse (-)

49278 .. 50204

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000410.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgcccctgatgaagaacctcacatttaacataatatcctctctactttttgggcttgaacgaggaactcggagagatgaatttttggagcgttttgaaaagatgatgcaaggattgtggtcagttccggtcaacttgcccttcacgcgttacaacagcagcctcaaggcaagcaagagggttcaaaaaatgctcaaagaacttatacgcgaaaggaaggtacaacttgatcaaaaaagggcttctccacaacaagacctcatcacttgcttccttagcatccggaatgatgaagggcatgatacttcggctattcttattacgttccttttgcggattctagctaatgaaccagcagtgtatgctgcccttcatcaagagcaggaagaaatagctagaagcaaattgccgggagaatttttaacatgggaagatcttgccaaaatgaaatacacatggagtatagcactggaaaccctgagaatgattcctccttcctttggtagctttaggacagctgtcaaagatattgagttcggtggattccacattcctaaagggtggcagtccagaaacaacatagttttggacaagagcactgttcaagtgcagaaaagatcagcaaaacatctagatgttaatcgtaaaatcgagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

219

Amino Acids

25.45

Weight (kDa)

9.74

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020058)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000410.1_g000010
rosa_rugosa	Rorug05G0176900
rosa_samantha	Rh5BG268200 Rh5CG301000 Rh5DG274700 Rh5DG275000 Rh5DG275900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	148, 210
AccIII	TCCGGA	1 cut(s)	282
AciI	CCGC	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	80, 416
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	59, 98, 185, 605
AluBI	AGCT	4 cut(s)	344, 395, 507, 518
AluI	AGCT	4 cut(s)	344, 395, 507, 518
Alw21I	GWGCWC	1 cut(s)	599
Aor13HI	TCCGGA	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	159, 365
ApoI	RAATTY	2 cut(s)	80, 416
AsuC2I	CCSGG	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	599
BbvI	GCAGC	2 cut(s)	171, 352
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	411
BfaI	CTAG	3 cut(s)	341, 396, 632
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	2 cut(s)	160, 366
BlsI	GCNGC	2 cut(s)	161, 367
Bme1390I	CCNGG	1 cut(s)	411
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	96, 288
BoxI	GACNNNNGTC	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	411
BsaBI	GATNNNNATC	1 cut(s)	639
BsaWI	WCCGGW	2 cut(s)	127, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	639
BseAI	TCCGGA	1 cut(s)	282
BseGI	GGATG	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	1 cut(s)	474
BseXI	GCAGC	2 cut(s)	171, 352
BsgI	GTGCAG	1 cut(s)	629
Bsh1236I	CGCG	2 cut(s)	148, 210
BsiHKAI	GWGCWC	1 cut(s)	599
BsiSI	CCGG	3 cut(s)	128, 283, 410
BslI	CCNNNNNNNGG	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp13I	TCCGGA	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	229, 433, 617
BspACI	CCGC	1 cut(s)	334
BspCNI	CTCAG	1 cut(s)	471
BspEI	TCCGGA	1 cut(s)	282
BspFNI	CGCG	2 cut(s)	148, 210
BsrI	ACTGG	1 cut(s)	474
BssMI	GATC	3 cut(s)	229, 433, 617
Bst4CI	ACNGT	1 cut(s)	601
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	275, 479
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	2 cut(s)	148, 210
BstKTI	GATC	3 cut(s)	232, 436, 620
BstMBI	GATC	3 cut(s)	229, 433, 617
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 276, 362
BstPAI	GACNNNNGTC	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	409
BstUI	CGCG	2 cut(s)	148, 210
BstV1I	GCAGC	2 cut(s)	171, 352
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	363, 467, 597
Cac8I	GCNNGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	221
CspCI	CAANNNNNGTGG	2 cut(s)	98, 133
CviAII	CATG	3 cut(s)	299, 426, 456
CviJI	RGCY	8 cut(s)	55, 162, 242, 311, 344, 395, 507, 518
CviKI_1	RGCY	8 cut(s)	55, 162, 242, 311, 344, 395, 507, 518
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	275, 479
DpnI	GATC	3 cut(s)	231, 435, 619
DpnII	GATC	3 cut(s)	229, 433, 617
FaeI	CATG	3 cut(s)	302, 429, 459
FaiI	YATR	8 cut(s)	32, 206, 300, 363, 427, 457, 464, 581
FatI	CATG	3 cut(s)	298, 425, 455
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	160, 366
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	160, 366
FspBI	CTAG	3 cut(s)	341, 396, 632
GluI	GCNGC	2 cut(s)	160, 366
HapII	CCGG	3 cut(s)	128, 283, 410
Hin1II	CATG	3 cut(s)	302, 429, 459
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	337, 487, 543
HpaII	CCGG	3 cut(s)	128, 283, 410
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	5 cut(s)	283, 377, 570, 632, 652
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	5 cut(s)	151, 211, 287, 380, 504
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	2 cut(s)	109, 610
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 276, 362
HpyF3I	CTNAG	2 cut(s)	275, 479
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	3 cut(s)	302, 429, 459
Kpn2I	TCCGGA	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	229, 433, 617
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	9 cut(s)	20, 141, 296, 366, 368, 423, 455, 491, 583
Lsp1109I	GCAGC	2 cut(s)	171, 352
LweI	GCATC	2 cut(s)	96, 288
MaeI	CTAG	3 cut(s)	341, 396, 632
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	3 cut(s)	231, 435, 619
MboI	GATC	3 cut(s)	229, 433, 617
MboII	GAAGA	3 cut(s)	25, 398, 443
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	599
MluCI	AATT	3 cut(s)	80, 404, 416
MluI	ACGCGT	1 cut(s)	146
MnlI	CCTC	7 cut(s)	29, 49, 56, 171, 173, 269, 501
MroI	TCCGGA	1 cut(s)	282
MseI	TTAA	3 cut(s)	27, 422, 639
MslI	CAYNNNNRTG	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	3 cut(s)	128, 283, 410
MspR9I	CCNGG	1 cut(s)	411
MvnI	CGCG	2 cut(s)	148, 210
MwoI	GCNNNNNNNGC	3 cut(s)	145, 276, 362
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	3 cut(s)	229, 433, 617
NlaIII	CATG	3 cut(s)	302, 429, 459
PfeI	GAWTC	3 cut(s)	337, 487, 543
PkrI	GCNGC	2 cut(s)	161, 367
PshAI	GACNNNNGTC	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	633
SaqAI	TTAA	3 cut(s)	27, 422, 639
SatI	GCNGC	2 cut(s)	160, 366
Sau3AI	GATC	3 cut(s)	229, 433, 617
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	599
SetI	ASST	8 cut(s)	21, 222, 261, 326, 346, 397, 509, 520
SfaNI	GCATC	2 cut(s)	96, 288
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	3 cut(s)	80, 404, 416
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	3 cut(s)	341, 396, 632
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	601
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	1 cut(s)	651
TasI	AATT	3 cut(s)	80, 404, 416
TfiI	GAWTC	3 cut(s)	337, 487, 543
Tru1I	TTAA	3 cut(s)	27, 422, 639
Tru9I	TTAA	3 cut(s)	27, 422, 639
TscAI	CASTG	3 cut(s)	363, 474, 604
TseI	GCWGC	2 cut(s)	159, 365
TspDTI	ATGAA	6 cut(s)	26, 93, 306, 362, 363, 461
TspRI	CASTG	3 cut(s)	363, 474, 604
XapI	RAATTY	2 cut(s)	80, 416
XbaI	TCTAGA	1 cut(s)	631
XspI	CTAG	3 cut(s)	341, 396, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.