Rh5DG274700

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0020058
Physical Location & Seq
Reverse (-)
33619453 .. 33638454
19002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG274700.1

Sequence Viewer

Length: 366 bp
ATGAATCACAAAGTTATGCCCCTGATGAAGAACCTCACATTTAACATAATATCCTCTCTACTTTTTGGGCTTGAACGAGGAACTCGGAGAGATGAATTTTTTGAGTGTTTTGAAAAGATGATGCAAGGATTGTGGTCAGTGCCGGTCAACTTGCCCTTCACGCGTTACAACAGCAGCCTCAAGGCAAGCAAGAGGGTTCAAAAAATGCTCAAAGAACTTATACGCGAAAGGAAGGTACAACTTGATCAAAAAAGGGCTTCTCCACAACAAGACCTCATCACTTGCTTCCTTAGCATCCGGAATGATGAAGGTAACAGAGTTGGAGATGGTGCACAATGTCATGGTAGTCATGGTTGCAGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

121

Amino Acids

14.0

Weight (kDa)

9.74

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 5 - 104 1.8e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020058)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000410.1_g000010
rosa_rugosa Rorug05G0176900
rosa_samantha Rh5BG268200 Rh5CG301000 Rh5DG274700 Rh5DG275000 Rh5DG275900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 163, 225
AccIII TCCGGA 1 cut(s) 297
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 1 cut(s) 237
AflIII ACRYGT 1 cut(s) 161
AgsI TTSAA 3 cut(s) 74, 113, 200
Alw21I GWGCWC 1 cut(s) 334
Alw44I GTGCAC 1 cut(s) 330
Aor13HI TCCGGA 1 cut(s) 297
ApaLI GTGCAC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 186
BccI CCATC 1 cut(s) 320
BclI TGATCA 1 cut(s) 244
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
BmsI GCATC 2 cut(s) 111, 303
Bpu10I CCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 297
Bse118I RCCGGY 1 cut(s) 142
BseAI TCCGGA 1 cut(s) 297
BseGI GGATG 1 cut(s) 294
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 1 cut(s) 186
Bsh1236I CGCG 2 cut(s) 163, 225
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 2 cut(s) 143, 298
Bsp1286I GDGCHC 1 cut(s) 334
Bsp13I TCCGGA 1 cut(s) 297
Bsp143I GATC 1 cut(s) 244
BspEI TCCGGA 1 cut(s) 297
BspFNI CGCG 2 cut(s) 163, 225
BsrFI RCCGGY 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 142
BssMI GATC 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 294
BstFNI CGCG 2 cut(s) 163, 225
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 160, 291
BstSLI GKGCMC 1 cut(s) 334
BstUI CGCG 2 cut(s) 163, 225
BstV1I GCAGC 1 cut(s) 186
BtsCI GGATG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 187
Cfr10I RCCGGY 1 cut(s) 142
Csp6I GTAC 1 cut(s) 236
CspCI CAANNNNNGTGG 2 cut(s) 113, 148
CviAII CATG 3 cut(s) 341, 350, 363
CviJI RGCY 3 cut(s) 70, 177, 257
CviKI_1 RGCY 3 cut(s) 70, 177, 257
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 1 cut(s) 290
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
FaeI CATG 3 cut(s) 344, 353, 366
FaiI YATR 6 cut(s) 17, 47, 221, 342, 351, 364
FatI CATG 3 cut(s) 340, 349, 362
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 175
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 175
HapII CCGG 2 cut(s) 143, 298
Hin1II CATG 3 cut(s) 344, 353, 366
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 143, 298
Hpy166II GTNNAC 2 cut(s) 148, 332
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 2 cut(s) 148, 332
HpyAV CCTTC 3 cut(s) 166, 226, 302
HpyCH4V TGCA 3 cut(s) 124, 332, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 291
HpyF3I CTNAG 1 cut(s) 290
Hsp92II CATG 3 cut(s) 344, 353, 366
Kpn2I TCCGGA 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 4 cut(s) 35, 156, 311, 343
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 2 cut(s) 111, 303
MaeIII GTNAC 2 cut(s) 164, 311
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 1 cut(s) 95
MluI ACGCGT 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 6 cut(s) 44, 64, 71, 186, 188, 284
MroI TCCGGA 1 cut(s) 297
MseI TTAA 1 cut(s) 42
MspI CCGG 2 cut(s) 143, 298
MvnI CGCG 2 cut(s) 163, 225
MwoI GCNNNNNNNGC 2 cut(s) 160, 291
NdeII GATC 1 cut(s) 244
NlaIII CATG 3 cut(s) 344, 353, 366
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 176
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 1 cut(s) 244
SduI GDGCHC 1 cut(s) 334
SetI ASST 4 cut(s) 36, 237, 276, 313
SfaNI GCATC 2 cut(s) 111, 303
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 95
TasI AATT 1 cut(s) 95
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 144
TseI GCWGC 1 cut(s) 174
TspDTI ATGAA 4 cut(s) 17, 41, 108, 321
TspRI CASTG 1 cut(s) 144
VneI GTGCAC 1 cut(s) 330
XapI RAATTY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.