Rh5CG301000

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0020058
Physical Location & Seq
Reverse (-)
33144636 .. 33145426
791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG301000.1

Sequence Viewer

Length: 456 bp
ATGCCCCTGATGAAAAACCTCACATTTAACATAATATCCTCTCTACTTTTTGGGCTTGAACGAGGAACTCGCAGAGATGAATTCGTGGAGTGTTTCCAAAAAATGATGCAAGGATTGTGGTCAGTGCCGGTTAACTTGCCCTTCACGCGTTACAACAGCGGCCTCAAGGCAAGCAAGAGGGTTCAAAACATGCTCAAACAACTTATACGCGAAAAGAGGGTACAGCTTGAGCAAAAAAGGGTTTCTCCACAACAAGACCTCATCACTTGCATCCTTAGCATCCGAAATGATGAAGGTAAAGAAGAATTAACGGAATTGGAGATGGTGCACAATGTCATGGTAGTCATGGTTGCAGGACATGACACTTCATCTGTTCTGATTACGTTCCTTTTGCAGCTTCTCGCTAATGAACCATTCTGCAAGAGCAGGAAGAAATTGCTAGAAGCAAATCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

151

Amino Acids

17.51

Weight (kDa)

9.47

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 139 8.9e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020058)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000410.1_g000010
rosa_rugosa Rorug05G0176900
rosa_samantha Rh5BG268200 Rh5CG301000 Rh5DG274700 Rh5DG275000 Rh5DG275900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 148, 210
AciI CCGC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 1 cut(s) 222
AflIII ACRYGT 1 cut(s) 146
AgsI TTSAA 2 cut(s) 59, 185
AluBI AGCT 2 cut(s) 226, 397
AluI AGCT 2 cut(s) 226, 397
Alw21I GWGCWC 1 cut(s) 330
Alw44I GTGCAC 1 cut(s) 326
AoxI GGCC 1 cut(s) 160
ApaLI GTGCAC 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 394
ApoI RAATTY 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 406
BccI CCATC 1 cut(s) 316
BfaI CTAG 1 cut(s) 440
BisI GCNGC 2 cut(s) 160, 395
BlsI GCNGC 2 cut(s) 161, 396
BmsI GCATC 3 cut(s) 96, 279, 288
Bpu10I CCTNAGC 1 cut(s) 275
BpuEI CTTGAG 2 cut(s) 149, 248
Bse118I RCCGGY 1 cut(s) 127
BseGI GGATG 2 cut(s) 270, 279
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 1 cut(s) 406
Bsh1236I CGCG 2 cut(s) 148, 210
BshFI GGCC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 128
BsnI GGCC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 330
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 162
BspFNI CGCG 2 cut(s) 148, 210
BsrFI RCCGGY 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 275
BstF5I GGATG 2 cut(s) 270, 279
BstFNI CGCG 2 cut(s) 148, 210
BstMWI GCNNNNNNNGC 2 cut(s) 145, 276
BstNSI RCATGY 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 330
BstUI CGCG 2 cut(s) 148, 210
BstV1I GCAGC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 2 cut(s) 270, 279
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 127
Csp6I GTAC 1 cut(s) 221
CspCI CAANNNNNGTGG 2 cut(s) 98, 133
CviAII CATG 4 cut(s) 190, 337, 346, 359
CviJI RGCY 4 cut(s) 55, 162, 226, 397
CviKI_1 RGCY 4 cut(s) 55, 162, 226, 397
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 80
FaeI CATG 4 cut(s) 193, 340, 349, 362
FaiI YATR 6 cut(s) 32, 191, 206, 338, 347, 360
FatI CATG 4 cut(s) 189, 336, 345, 358
Fnu4HI GCNGC 2 cut(s) 160, 395
FokI GGATG 2 cut(s) 257, 266
Fsp4HI GCNGC 2 cut(s) 160, 395
FspBI CTAG 1 cut(s) 440
GluI GCNGC 2 cut(s) 160, 395
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 128
Hin1II CATG 4 cut(s) 193, 340, 349, 362
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HpaI GTTAAC 1 cut(s) 133
HpaII CCGG 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 133, 328
Hpy188I TCNGA 2 cut(s) 284, 378
Hpy8I GTNNAC 2 cut(s) 133, 328
HpyAV CCTTC 2 cut(s) 151, 287
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 6 cut(s) 109, 270, 328, 353, 394, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 276
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 4 cut(s) 193, 340, 349, 362
KspAI GTTAAC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 20, 141, 339, 412
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 3 cut(s) 96, 279, 288
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 1 cut(s) 149
MboII GAAGA 2 cut(s) 314, 442
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 4 cut(s) 80, 305, 314, 434
MluI ACGCGT 1 cut(s) 146
MnlI CCTC 7 cut(s) 29, 49, 56, 171, 173, 210, 269
MseI TTAA 3 cut(s) 27, 132, 308
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 1 cut(s) 128
MvnI CGCG 2 cut(s) 148, 210
MwoI GCNNNNNNNGC 2 cut(s) 145, 276
NlaIII CATG 4 cut(s) 193, 340, 349, 362
NspI RCATGY 1 cut(s) 193
PkrI GCNGC 2 cut(s) 161, 396
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 3 cut(s) 27, 132, 308
SatI GCNGC 2 cut(s) 160, 395
SduI GDGCHC 1 cut(s) 330
SetI ASST 6 cut(s) 21, 228, 261, 298, 386, 399
SfaNI GCATC 3 cut(s) 96, 279, 288
SmlI CTYRAG 2 cut(s) 164, 227
SmoI CTYRAG 2 cut(s) 164, 227
Sse9I AATT 4 cut(s) 80, 305, 314, 434
SsiI CCGC 1 cut(s) 159
SspMI CTAG 1 cut(s) 440
TaiI ACGT 1 cut(s) 386
TasI AATT 4 cut(s) 80, 305, 314, 434
TauI GCSGC 1 cut(s) 162
Tru1I TTAA 3 cut(s) 27, 132, 308
Tru9I TTAA 3 cut(s) 27, 132, 308
TscAI CASTG 1 cut(s) 129
TseI GCWGC 1 cut(s) 394
TspDTI ATGAA 5 cut(s) 26, 93, 306, 357, 423
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 129
VneI GTGCAC 1 cut(s) 326
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 193
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.