Rmu_ssc0000410.1_g000010

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000410.1
OG0020058
Physical Location & Seq
Reverse (-)
49278 .. 50204
927 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
atgcccctgatgaagaacctcacatttaacataatatcctctctactttttgggcttgaacgaggaactcggagagatgaatttttggagcgttttgaaaagatgatgcaaggattgtggtcagttccggtcaacttgcccttcacgcgttacaacagcagcctcaaggcaagcaagagggttcaaaaaatgctcaaagaacttatacgcgaaaggaaggtacaacttgatcaaaaaagggcttctccacaacaagacctcatcacttgcttccttagcatccggaatgatgaagggcatgatacttcggctattcttattacgttccttttgcggattctagctaatgaaccagcagtgtatgctgcccttcatcaagagcaggaagaaatagctagaagcaaattgccgggagaatttttaacatgggaagatcttgccaaaatgaaatacacatggagtatagcactggaaaccctgagaatgattcctccttcctttggtagctttaggacagctgtcaaagatattgagttcggtggattccacattcctaaagggtggcagtccagaaacaacatagttttggacaagagcactgttcaagtgcagaaaagatcagcaaaacatctagatgttaatcgtaaaatcgagaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

219

Amino Acids

25.45

Weight (kDa)

9.74

Isoelectric Point (pI)

61.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 188 1.9e-22 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020058)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000410.1_g000010
rosa_rugosa Rorug05G0176900
rosa_samantha Rh5BG268200 Rh5CG301000 Rh5DG274700 Rh5DG275000 Rh5DG275900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 148, 210
AccIII TCCGGA 1 cut(s) 282
AciI CCGC 1 cut(s) 334
AcsI RAATTY 2 cut(s) 80, 416
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 500
AflIII ACRYGT 1 cut(s) 146
AgsI TTSAA 4 cut(s) 59, 98, 185, 605
AluBI AGCT 4 cut(s) 344, 395, 507, 518
AluI AGCT 4 cut(s) 344, 395, 507, 518
Alw21I GWGCWC 1 cut(s) 599
Aor13HI TCCGGA 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 159, 365
ApoI RAATTY 2 cut(s) 80, 416
AsuC2I CCSGG 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 599
BbvI GCAGC 2 cut(s) 171, 352
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 411
BfaI CTAG 3 cut(s) 341, 396, 632
BglII AGATCT 1 cut(s) 433
BisI GCNGC 2 cut(s) 160, 366
BlsI GCNGC 2 cut(s) 161, 367
Bme1390I CCNGG 1 cut(s) 411
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 96, 288
BoxI GACNNNNGTC 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 411
BsaBI GATNNNNATC 1 cut(s) 639
BsaWI WCCGGW 2 cut(s) 127, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 474
Bse8I GATNNNNATC 1 cut(s) 639
BseAI TCCGGA 1 cut(s) 282
BseGI GGATG 1 cut(s) 279
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 1 cut(s) 474
BseXI GCAGC 2 cut(s) 171, 352
BsgI GTGCAG 1 cut(s) 629
Bsh1236I CGCG 2 cut(s) 148, 210
BsiHKAI GWGCWC 1 cut(s) 599
BsiSI CCGG 3 cut(s) 128, 283, 410
BslI CCNNNNNNNGG 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 599
Bsp13I TCCGGA 1 cut(s) 282
Bsp143I GATC 3 cut(s) 229, 433, 617
BspACI CCGC 1 cut(s) 334
BspCNI CTCAG 1 cut(s) 471
BspEI TCCGGA 1 cut(s) 282
BspFNI CGCG 2 cut(s) 148, 210
BsrI ACTGG 1 cut(s) 474
BssMI GATC 3 cut(s) 229, 433, 617
Bst4CI ACNGT 1 cut(s) 601
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 275, 479
BstF5I GGATG 1 cut(s) 279
BstFNI CGCG 2 cut(s) 148, 210
BstKTI GATC 3 cut(s) 232, 436, 620
BstMBI GATC 3 cut(s) 229, 433, 617
BstMWI GCNNNNNNNGC 3 cut(s) 145, 276, 362
BstPAI GACNNNNGTC 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 409
BstUI CGCG 2 cut(s) 148, 210
BstV1I GCAGC 2 cut(s) 171, 352
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BtsCI GGATG 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 3 cut(s) 363, 467, 597
Cac8I GCNNGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 221
CspCI CAANNNNNGTGG 2 cut(s) 98, 133
CviAII CATG 3 cut(s) 299, 426, 456
CviJI RGCY 8 cut(s) 55, 162, 242, 311, 344, 395, 507, 518
CviKI_1 RGCY 8 cut(s) 55, 162, 242, 311, 344, 395, 507, 518
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 2 cut(s) 275, 479
DpnI GATC 3 cut(s) 231, 435, 619
DpnII GATC 3 cut(s) 229, 433, 617
FaeI CATG 3 cut(s) 302, 429, 459
FaiI YATR 8 cut(s) 32, 206, 300, 363, 427, 457, 464, 581
FatI CATG 3 cut(s) 298, 425, 455
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 160, 366
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 2 cut(s) 160, 366
FspBI CTAG 3 cut(s) 341, 396, 632
GluI GCNGC 2 cut(s) 160, 366
HapII CCGG 3 cut(s) 128, 283, 410
Hin1II CATG 3 cut(s) 302, 429, 459
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 337, 487, 543
HpaII CCGG 3 cut(s) 128, 283, 410
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 5 cut(s) 283, 377, 570, 632, 652
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 5 cut(s) 151, 211, 287, 380, 504
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 109, 610
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 276, 362
HpyF3I CTNAG 2 cut(s) 275, 479
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 3 cut(s) 302, 429, 459
Kpn2I TCCGGA 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 229, 433, 617
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 9 cut(s) 20, 141, 296, 366, 368, 423, 455, 491, 583
Lsp1109I GCAGC 2 cut(s) 171, 352
LweI GCATC 2 cut(s) 96, 288
MaeI CTAG 3 cut(s) 341, 396, 632
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 149
MalI GATC 3 cut(s) 231, 435, 619
MboI GATC 3 cut(s) 229, 433, 617
MboII GAAGA 3 cut(s) 25, 398, 443
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 599
MluCI AATT 3 cut(s) 80, 404, 416
MluI ACGCGT 1 cut(s) 146
MnlI CCTC 7 cut(s) 29, 49, 56, 171, 173, 269, 501
MroI TCCGGA 1 cut(s) 282
MseI TTAA 3 cut(s) 27, 422, 639
MslI CAYNNNNRTG 1 cut(s) 633
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 3 cut(s) 128, 283, 410
MspR9I CCNGG 1 cut(s) 411
MvnI CGCG 2 cut(s) 148, 210
MwoI GCNNNNNNNGC 3 cut(s) 145, 276, 362
NciI CCSGG 1 cut(s) 411
NdeII GATC 3 cut(s) 229, 433, 617
NlaIII CATG 3 cut(s) 302, 429, 459
PfeI GAWTC 3 cut(s) 337, 487, 543
PkrI GCNGC 2 cut(s) 161, 367
PshAI GACNNNNGTC 1 cut(s) 518
PsuI RGATCY 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 633
SaqAI TTAA 3 cut(s) 27, 422, 639
SatI GCNGC 2 cut(s) 160, 366
Sau3AI GATC 3 cut(s) 229, 433, 617
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 1 cut(s) 599
SetI ASST 8 cut(s) 21, 222, 261, 326, 346, 397, 509, 520
SfaNI GCATC 2 cut(s) 96, 288
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 80, 404, 416
SsiI CCGC 1 cut(s) 334
SspMI CTAG 3 cut(s) 341, 396, 632
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 601
TaiI ACGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 651
TasI AATT 3 cut(s) 80, 404, 416
TfiI GAWTC 3 cut(s) 337, 487, 543
Tru1I TTAA 3 cut(s) 27, 422, 639
Tru9I TTAA 3 cut(s) 27, 422, 639
TscAI CASTG 3 cut(s) 363, 474, 604
TseI GCWGC 2 cut(s) 159, 365
TspDTI ATGAA 6 cut(s) 26, 93, 306, 362, 363, 461
TspRI CASTG 3 cut(s) 363, 474, 604
XapI RAATTY 2 cut(s) 80, 416
XbaI TCTAGA 1 cut(s) 631
XspI CTAG 3 cut(s) 341, 396, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.