Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000438.1

Orthogroup ID

OG0020717

Physical Location & Seq

Genomic Coordinates Forward (+)

79200 .. 81502

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggaaaaaactattttgaaagcgaagataagaaaaacctgggaagtgggaggccagagaagtcccaatagcagcctcttcatcagtattggcctgtgcaccttgtgcaccactcatagggcaaaccccttgttcatggaaaatcatattgcaatccctgcacttgcgcccatcaatgggcttctcgacctgagcataccctacgctgacctcctgccgccggaccgctcaacccgcacaaagctagtgaccaaggcccttgagctcggctactctggcgtcacctacaaccgtacaatcaagggtgtcatgtccaatcgcaaccattgctccatccccctcctcactttcccttctcttctcgaacactcacctcacttcacctcctccgtcgacttccaccacaacctcctctgcgtcccacgtgccacccctttccgccaatacaggcgcctcacagtctgtgtcgaaacccctgccctggctcagtcgctcaattccagtaaccccgttttgaagacctacgatttggtggctgtcaatcccatgaaccaatctgttttcgatcaaacatgtgagaaagtaggagggagagacaaagatagaaagagattacagattggggctttgcagggcggatcagactttgttgatcctttacggaaacgtttgggtttatggggtcgaggaggacgactgtggtcggtgtggatgatggttgtaggtggagctgagtgcgtgatccgatcttggcgacgagacttcaaagttgtcaattgcgacaatgatggtgttggtgctgtgatgttggtgttgttcttcgtcatgctccggtttggttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

281

Amino Acids

31.37

Weight (kDa)

9.72

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_p30	PF01876	74 - 195	1.6e-10	RNase P subunit p30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020717)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8277985.1_g000001 Rmu_sc0002792.1_g000017 Rmu_ssc0000438.1_g000022
rosa_roxburghii	Rroxscaffold_2G00109900
rosa_samantha	Rh2DG394200 Rh7BG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	450
AccBSI	CCGCTC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	393
AciI	CCGC	5 cut(s)	218, 226, 235, 439, 636
AclI	AACGTT	1 cut(s)	667
AclWI	GGATC	3 cut(s)	646, 647, 736
AcvI	CACGTG	1 cut(s)	425
AcyI	GRCGYC	2 cut(s)	279, 451
AdeI	CACNNNGTG	1 cut(s)	105
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	5 cut(s)	117, 176, 177, 220, 481
AflIII	ACRYGT	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	19, 517, 766
AjnI	CCWGG	2 cut(s)	38, 480
AluBI	AGCT	3 cut(s)	244, 265, 731
AluI	AGCT	3 cut(s)	244, 265, 731
Alw21I	GWGCWC	3 cut(s)	101, 110, 267
Alw26I	GTCTC	2 cut(s)	588, 753
Alw44I	GTGCAC	2 cut(s)	97, 106
AlwI	GGATC	3 cut(s)	646, 647, 736
AoxI	GGCC	3 cut(s)	52, 91, 255
ApaLI	GTGCAC	2 cut(s)	97, 106
ApeKI	GCWGC	1 cut(s)	72
ArsI	GACNNNNNNTTYG	2 cut(s)	511, 543
AspLEI	GCGC	2 cut(s)	169, 453
AspS9I	GGNCC	2 cut(s)	223, 256
AsuHPI	GGTGA	3 cut(s)	274, 363, 373
AvaII	GGWCC	1 cut(s)	223
BaeGI	GKGCMC	2 cut(s)	101, 110
BanI	GGYRCC	1 cut(s)	450
BanII	GRGCYC	1 cut(s)	267
BbrPI	CACGTG	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	3 cut(s)	101, 110, 267
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	4 cut(s)	179, 341, 709, 782
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	2 cut(s)	40, 482
BcoDI	GTCTC	2 cut(s)	588, 753
BfaI	CTAG	2 cut(s)	245, 844
BfoI	RGCGCY	1 cut(s)	454
BisI	GCNGC	2 cut(s)	73, 218
BlsI	GCNGC	2 cut(s)	74, 219
Bme1390I	CCNGG	2 cut(s)	40, 482
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	223, 256
BmiI	GGNNCC	2 cut(s)	452, 841
BmrFI	CCNGG	2 cut(s)	40, 482
BoxI	GACNNNNGTC	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	524
Bpu10I	CCTNAGC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	425
BsaHI	GRCGYC	2 cut(s)	279, 451
BsaJI	CCNNGG	3 cut(s)	39, 252, 480
BsaWI	WCCGGW	1 cut(s)	831
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 368, 398
Bsc4I	CCNNNNNNNGG	5 cut(s)	117, 176, 177, 220, 481
Bse1I	ACTGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	40, 482
BseDI	CCNNGG	3 cut(s)	39, 252, 480
BseGI	GGATG	2 cut(s)	333, 717
BseLI	CCNNNNNNNGG	5 cut(s)	117, 176, 177, 220, 481
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	3 cut(s)	182, 500, 723
BseNI	ACTGG	1 cut(s)	501
BseRI	GAGGAG	4 cut(s)	332, 376, 401, 702
BseSI	GKGCMC	2 cut(s)	101, 110
BseXI	GCAGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	54, 93, 257
BshNI	GGYRCC	1 cut(s)	450
BsiHKAI	GWGCWC	3 cut(s)	101, 110, 267
BsiSI	CCGG	2 cut(s)	221, 832
BslFI	GGGAC	2 cut(s)	48, 404
BslI	CCNNNNNNNGG	5 cut(s)	117, 176, 177, 220, 481
BsmAI	GTCTC	2 cut(s)	588, 753
BsmFI	GGGAC	2 cut(s)	48, 404
BsnI	GGCC	3 cut(s)	54, 93, 257
Bsp1286I	GDGCHC	3 cut(s)	101, 110, 267
Bsp143I	GATC	5 cut(s)	565, 638, 652, 741, 746
BspACI	CCGC	5 cut(s)	218, 226, 235, 439, 636
BspANI	GGCC	3 cut(s)	54, 93, 257
BspCNI	CTCAG	3 cut(s)	183, 499, 724
BspLI	GGNNCC	2 cut(s)	452, 841
BspPI	GGATC	3 cut(s)	646, 647, 736
BspT107I	GGYRCC	1 cut(s)	450
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	501
BssECI	CCNNGG	3 cut(s)	39, 252, 480
BssMI	GATC	5 cut(s)	565, 638, 652, 741, 746
BssNI	GRCGYC	2 cut(s)	279, 451
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	40, 482
Bst4CI	ACNGT	3 cut(s)	293, 460, 699
Bst6I	CTCTTC	2 cut(s)	83, 363
BstACI	GRCGYC	2 cut(s)	279, 451
BstAPI	GCANNNNNTGC	3 cut(s)	105, 158, 327
BstBAI	YACGTR	1 cut(s)	425
BstDEI	CTNAG	3 cut(s)	191, 486, 732
BstF5I	GGATG	2 cut(s)	333, 717
BstH2I	RGCGCY	1 cut(s)	454
BstHHI	GCGC	2 cut(s)	169, 453
BstKTI	GATC	5 cut(s)	568, 641, 655, 744, 749
BstMAI	GTCTC	2 cut(s)	588, 753
BstMBI	GATC	5 cut(s)	565, 638, 652, 741, 746
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 158, 234, 276, 327
BstNI	CCWGG	2 cut(s)	40, 482
BstNSI	RCATGY	1 cut(s)	576
BstPAI	GACNNNNGTC	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	38, 480
BstSLI	GKGCMC	2 cut(s)	101, 110
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	524
BsuRI	GGCC	3 cut(s)	54, 93, 257
BtsCI	GGATG	2 cut(s)	333, 717
CfoI	GCGC	2 cut(s)	169, 453
Cfr13I	GGNCC	2 cut(s)	223, 256
CpoI	CGGWCCG	1 cut(s)	223
CseI	GACGC	2 cut(s)	268, 406
Csp6I	GTAC	1 cut(s)	294
CspI	CGGWCCG	1 cut(s)	223
CviAII	CATG	5 cut(s)	136, 310, 547, 573, 826
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	3 cut(s)	191, 486, 732
DinI	GGCGCC	1 cut(s)	452
DpnI	GATC	5 cut(s)	567, 640, 654, 743, 748
DpnII	GATC	5 cut(s)	565, 638, 652, 741, 746
DraIII	CACNNNGTG	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	83, 363
EarI	CTCTTC	2 cut(s)	83, 363
EciI	GGCGGA	2 cut(s)	428, 651
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	265
Eco72I	CACGTG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	38, 480
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	452
EheI	GGCGCC	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	5 cut(s)	139, 313, 550, 576, 829
FaiI	YATR	9 cut(s)	117, 137, 147, 197, 311, 548, 574, 679, 827
FaqI	GGGAC	2 cut(s)	48, 404
FatI	CATG	5 cut(s)	135, 309, 546, 572, 825
FauI	CCCGC	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	73, 218
FokI	GGATG	2 cut(s)	320, 724
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	73, 218
FspBI	CTAG	2 cut(s)	245, 844
GlaI	GCGC	2 cut(s)	168, 452
GluI	GCNGC	2 cut(s)	73, 218
HaeII	RGCGCY	1 cut(s)	454
HaeIII	GGCC	3 cut(s)	54, 93, 257
HapII	CCGG	2 cut(s)	221, 832
HgaI	GACGC	2 cut(s)	268, 406
HhaI	GCGC	2 cut(s)	169, 453
Hin1I	GRCGYC	2 cut(s)	279, 451
Hin1II	CATG	5 cut(s)	139, 313, 550, 576, 829
Hin6I	GCGC	2 cut(s)	167, 451
HinP1I	GCGC	2 cut(s)	167, 451
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HpaII	CCGG	2 cut(s)	221, 832
HphI	GGTGA	3 cut(s)	274, 363, 373
Hpy166II	GTNNAC	3 cut(s)	99, 108, 394
Hpy188I	TCNGA	2 cut(s)	643, 746
Hpy188III	TCNNGA	2 cut(s)	185, 362
Hpy8I	GTNNAC	3 cut(s)	99, 108, 394
Hpy99I	CGWCG	2 cut(s)	395, 759
HpyAV	CCTTC	1 cut(s)	363
HpyCH4III	ACNGT	3 cut(s)	293, 460, 699
HpyCH4IV	ACGT	2 cut(s)	424, 667
HpyCH4V	TGCA	5 cut(s)	99, 108, 152, 161, 631
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 158, 234, 276, 327
HpyF3I	CTNAG	3 cut(s)	191, 486, 732
HpySE526I	ACGT	2 cut(s)	424, 667
Hsp92I	GRCGYC	2 cut(s)	279, 451
Hsp92II	CATG	5 cut(s)	139, 313, 550, 576, 829
HspAI	GCGC	2 cut(s)	167, 451
KasI	GGCGCC	1 cut(s)	450
Kzo9I	GATC	5 cut(s)	565, 638, 652, 741, 746
LmnI	GCTCC	3 cut(s)	335, 728, 834
Lsp1109I	GCAGC	1 cut(s)	84
MaeI	CTAG	2 cut(s)	245, 844
MaeII	ACGT	2 cut(s)	424, 667
MaeIII	GTNAC	3 cut(s)	247, 280, 503
MalI	GATC	5 cut(s)	567, 640, 654, 743, 748
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	5 cut(s)	565, 638, 652, 741, 746
MboII	GAAGA	5 cut(s)	37, 70, 350, 529, 811
MfeI	CAATTG	1 cut(s)	775
MhlI	GDGCHC	3 cut(s)	101, 110, 267
MluCI	AATT	2 cut(s)	496, 775
Mly113I	GGCGCC	1 cut(s)	451
MspI	CCGG	2 cut(s)	221, 832
MspR9I	CCNGG	2 cut(s)	40, 482
MunI	CAATTG	1 cut(s)	775
MvaI	CCWGG	2 cut(s)	40, 482
MwoI	GCNNNNNNNGC	5 cut(s)	105, 158, 234, 276, 327
NarI	GGCGCC	1 cut(s)	451
NdeII	GATC	5 cut(s)	565, 638, 652, 741, 746
NlaIII	CATG	5 cut(s)	139, 313, 550, 576, 829
NlaIV	GGNNCC	2 cut(s)	452, 841
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	2 cut(s)	247, 280
NspI	RCATGY	1 cut(s)	576
PciI	ACATGT	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	1 cut(s)	691
PkrI	GCNGC	2 cut(s)	74, 219
PluTI	GGCGCC	1 cut(s)	454
PmaCI	CACGTG	1 cut(s)	425
PmlI	CACGTG	1 cut(s)	425
Ppu21I	YACGTR	1 cut(s)	425
PscI	ACATGT	1 cut(s)	572
PshAI	GACNNNNGTC	1 cut(s)	700
Psp124BI	GAGCTC	1 cut(s)	267
Psp1406I	AACGTT	1 cut(s)	667
Psp6I	CCWGG	2 cut(s)	38, 480
PspCI	CACGTG	1 cut(s)	425
PspGI	CCWGG	2 cut(s)	38, 480
PspN4I	GGNNCC	2 cut(s)	452, 841
PspPI	GGNCC	2 cut(s)	223, 256
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
Rsr2I	CGGWCCG	1 cut(s)	223
RsrII	CGGWCCG	1 cut(s)	223
SacI	GAGCTC	1 cut(s)	267
SalI	GTCGAC	1 cut(s)	392
SatI	GCNGC	2 cut(s)	73, 218
Sau3AI	GATC	5 cut(s)	565, 638, 652, 741, 746
Sau96I	GGNCC	2 cut(s)	223, 256
ScrFI	CCNGG	2 cut(s)	40, 482
SduI	GDGCHC	3 cut(s)	101, 110, 267
SfoI	GGCGCC	1 cut(s)	452
SinI	GGWCC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	496, 775
SsiI	CCGC	5 cut(s)	218, 226, 235, 439, 636
SspDI	GGCGCC	1 cut(s)	450
SspMI	CTAG	2 cut(s)	245, 844
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	38, 480
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	293, 460, 699
TaiI	ACGT	2 cut(s)	427, 670
TaqI	TCGA	6 cut(s)	186, 363, 393, 468, 564, 685
TasI	AATT	2 cut(s)	496, 775
TauI	GCSGC	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	247, 280
TseI	GCWGC	1 cut(s)	72
Tsp45I	GTSAC	2 cut(s)	247, 280
TspDTI	ATGAA	3 cut(s)	70, 124, 563
TspGWI	ACGGA	2 cut(s)	379, 676
VneI	GTGCAC	2 cut(s)	97, 106
VpaK11BI	GGWCC	1 cut(s)	223
XceI	RCATGY	1 cut(s)	576
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	2 cut(s)	245, 844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.