Rmu_ssc0000449.1_g000010

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000449.1
OG0021621
Physical Location & Seq
Forward (+)
68377 .. 68811
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000449.1_g000010.1.cds

Sequence Viewer

Length: 363 bp
atgatgctactgcttaaccagccccatgctaatctatgggcagccgagttattttcaattgttggtggtgtagaaggaacgagttctaatcatgatagtcagaaatgtgtgcagaaccaagcagagtcttctcttttcattgaggaagatgagctcgttgggattgaagaggagaagagcatgttaatacaattgctgatgaatgaggagaaaaaccagaaaatcatctcagtggtcgggatggaaggatctgggaagaccactcttgttgccaagagcttcactaatgcaatgatctccgtagccttgacccggttctatctccgttttccacctccgatgacaccaccacccgggttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

120

Amino Acids

13.23

Weight (kDa)

4.79

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021621)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000449.1_g000010
rosa_rugosa Rorug02G0284100
rosa_samantha Rh2AG336600 Rh2CG323900 Rh2DG361500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 256
AfiI CCNNNNNNNGG 2 cut(s) 312, 353
AgsI TTSAA 2 cut(s) 57, 167
AluBI AGCT 2 cut(s) 154, 279
AluI AGCT 2 cut(s) 154, 279
Alw21I GWGCWC 1 cut(s) 156
AlwI GGATC 1 cut(s) 256
Ama87I CYCGRG 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 82
AsuC2I CCSGG 3 cut(s) 313, 354, 355
AvaI CYCGRG 1 cut(s) 353
BanII GRGCYC 1 cut(s) 156
BbsI GAAGAC 2 cut(s) 120, 263
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 235
BcnI CCSGG 3 cut(s) 313, 354, 355
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 3 cut(s) 313, 354, 355
BmeT110I CYCGRG 1 cut(s) 353
BmrFI CCNGG 3 cut(s) 313, 354, 355
BpiI GAAGAC 2 cut(s) 120, 263
BpuMI CCSGG 3 cut(s) 313, 354, 355
BsaJI CCNNGG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 2 cut(s) 312, 353
Bse3DI GCAATG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 312, 353
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 243
BseRI GAGGAG 2 cut(s) 185, 221
BseXI GCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 2 cut(s) 313, 354
BslI CCNNNNNNNGG 2 cut(s) 312, 353
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 248, 294
BspCNI CTCAG 1 cut(s) 242
BspHI TCATGA 1 cut(s) 91
BspPI GGATC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 2 cut(s) 248, 294
Bst6I CTCTTC 2 cut(s) 162, 170
BstDEI CTNAG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 2 cut(s) 251, 297
BstMBI GATC 2 cut(s) 248, 294
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 3 cut(s) 311, 352, 353
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 2 cut(s) 120, 263
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 237
CciI TCATGA 1 cut(s) 91
Cfr9I CCCGGG 1 cut(s) 353
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 3 cut(s) 26, 92, 181
CviJI RGCY 5 cut(s) 22, 44, 154, 279, 305
CviKI_1 RGCY 5 cut(s) 22, 44, 154, 279, 305
DdeI CTNAG 1 cut(s) 229
DpnI GATC 2 cut(s) 250, 296
DpnII GATC 2 cut(s) 248, 294
Eam1104I CTCTTC 2 cut(s) 162, 170
EarI CTCTTC 2 cut(s) 162, 170
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 3 cut(s) 29, 95, 184
FaiI YATR 4 cut(s) 27, 37, 93, 182
FatI CATG 3 cut(s) 25, 91, 180
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HapII CCGG 2 cut(s) 313, 354
Hin1II CATG 3 cut(s) 29, 95, 184
HinfI GANTC 1 cut(s) 125
HpaII CCGG 2 cut(s) 313, 354
Hpy188I TCNGA 2 cut(s) 102, 339
Hpy188III TCNNGA 2 cut(s) 92, 238
HpyAV CCTTC 2 cut(s) 68, 239
HpyCH4V TGCA 2 cut(s) 112, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 229
Hsp92II CATG 3 cut(s) 29, 95, 184
Kzo9I GATC 2 cut(s) 248, 294
LguI GCTCTTC 1 cut(s) 170
LpnPI CCDG 4 cut(s) 32, 230, 237, 326
Lsp1109I GCAGC 1 cut(s) 53
MalI GATC 2 cut(s) 250, 296
MboI GATC 2 cut(s) 248, 294
MboII GAAGA 5 cut(s) 120, 158, 179, 187, 268
MfeI CAATTG 2 cut(s) 57, 191
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 57, 191
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 4 cut(s) 136, 163, 199, 345
MroXI GAANNNNTTC 1 cut(s) 82
MseI TTAA 2 cut(s) 15, 185
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 2 cut(s) 313, 354
MspR9I CCNGG 3 cut(s) 313, 354, 355
MunI CAATTG 2 cut(s) 57, 191
MwoI GCNNNNNNNGC 1 cut(s) 19
NciI CCSGG 3 cut(s) 313, 354, 355
NdeII GATC 2 cut(s) 248, 294
NlaIII CATG 3 cut(s) 29, 95, 184
NmeAIII GCCGAG 1 cut(s) 70
NspI RCATGY 1 cut(s) 184
PagI TCATGA 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp124BI GAGCTC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 230
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 2 cut(s) 15, 185
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 248, 294
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 313, 354, 355
SduI GDGCHC 1 cut(s) 156
SetI ASST 3 cut(s) 156, 281, 337
SmaI CCCGGG 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 2 cut(s) 57, 191
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 311, 352, 353
TasI AATT 2 cut(s) 57, 191
Tru1I TTAA 2 cut(s) 15, 185
Tru9I TTAA 2 cut(s) 15, 185
TscAI CASTG 1 cut(s) 237
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 127, 215
TspGWI ACGGA 2 cut(s) 289, 314
TspMI CCCGGG 1 cut(s) 353
TspRI CASTG 1 cut(s) 237
XceI RCATGY 1 cut(s) 184
XmaI CCCGGG 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.