Rh2AG336600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0021621
Physical Location & Seq
Reverse (-)
48806078 .. 48807049
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG336600.1

Sequence Viewer

Length: 261 bp
ATGCCGGAAATCCCTGATGGAGTATTGTGTGCATTTTTGCAGTGTGGGATCCCTGATCAGAATGAAGAAAGGTCCTTCTTCTGCTACATTCAATCCGTCTCGTGTCTTTCAGCTCTCATGGAATCCCAGGCCAAAGATAAGCTAGAGGTGTCCATGGTGGCTGACAATGAGTCTAGTAAGAGTAGAAGAGGCAGAGCCCTACTACGAGAAGAAAGACGAGACCAAGCTCGCTGCCCAAGAGGCTGCCCTCACCACCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.73

Weight (kDa)

6.08

Isoelectric Point (pI)

67.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021621)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000449.1_g000010
rosa_rugosa Rorug02G0284100
rosa_samantha Rh2AG336600 Rh2CG323900 Rh2DG361500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 43, 56
AgsI TTSAA 1 cut(s) 92
AhdI GACNNNNNGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 3 cut(s) 113, 142, 227
AluI AGCT 3 cut(s) 113, 142, 227
Alw26I GTCTC 2 cut(s) 103, 213
AlwI GGATC 2 cut(s) 43, 56
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 231, 243
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 1 cut(s) 72
BamHI GGATCC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 199
BauI CACGAG 1 cut(s) 100
BbvI GCAGC 2 cut(s) 218, 230
BccI CCATC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 103, 213
BfaI CTAG 2 cut(s) 143, 174
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 2 cut(s) 232, 244
BlsI GCNGC 2 cut(s) 233, 245
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 72
BmeRI GACNNNNNGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 126, 153
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 126, 153
BseXI GCAGC 2 cut(s) 218, 230
BshFI GGCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 5
BsmAI GTCTC 2 cut(s) 103, 213
BsmBI CGTCTC 1 cut(s) 103
BsnI GGCC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 48, 55
Bsp19I CCATGG 1 cut(s) 153
BspANI GGCC 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 2 cut(s) 43, 56
BspTNI GGTCTC 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 126, 153
BssMI GATC 2 cut(s) 48, 55
BssSI CACGAG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 229
BstDSI CCRYGG 1 cut(s) 153
BstKTI GATC 2 cut(s) 51, 58
BstMAI GTCTC 2 cut(s) 103, 213
BstMBI GATC 2 cut(s) 48, 55
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 218, 230
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 72
CviAII CATG 2 cut(s) 118, 154
CviJI RGCY 7 cut(s) 113, 131, 142, 161, 197, 227, 243
CviKI_1 RGCY 7 cut(s) 113, 131, 142, 161, 197, 227, 243
DpnI GATC 2 cut(s) 50, 57
DpnII GATC 2 cut(s) 48, 55
DriI GACNNNNNGTC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 181
Eam1105I GACNNNNNGTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 2 cut(s) 121, 157
FaiI YATR 2 cut(s) 119, 155
FatI CATG 2 cut(s) 117, 153
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 232, 244
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 2 cut(s) 232, 244
FspBI CTAG 2 cut(s) 143, 174
GluI GCNGC 2 cut(s) 232, 244
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 5
Hin1II CATG 2 cut(s) 121, 157
HinfI GANTC 2 cut(s) 122, 170
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 32, 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 121, 157
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 48, 55
LpnPI CCDG 5 cut(s) 18, 27, 66, 113, 140
Lsp1109I GCAGC 2 cut(s) 218, 230
MaeI CTAG 2 cut(s) 143, 174
MalI GATC 2 cut(s) 50, 57
MboI GATC 2 cut(s) 48, 55
MboII GAAGA 4 cut(s) 70, 77, 198, 221
MflI RGATCY 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 199
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 4 cut(s) 139, 182, 233, 258
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 240
NcoI CCATGG 1 cut(s) 153
NdeII GATC 2 cut(s) 48, 55
NlaIII CATG 2 cut(s) 121, 157
NlaIV GGNNCC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 2 cut(s) 233, 245
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 72
PspPPI RGGWCCY 1 cut(s) 72
PsuI RGATCY 1 cut(s) 48
SatI GCNGC 2 cut(s) 232, 244
Sau3AI GATC 2 cut(s) 48, 55
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 199
SetI ASST 5 cut(s) 74, 115, 144, 150, 229
SinI GGWCC 1 cut(s) 72
SspMI CTAG 2 cut(s) 143, 174
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 153
TfiI GAWTC 1 cut(s) 122
TscAI CASTG 1 cut(s) 47
TseI GCWGC 2 cut(s) 231, 243
TspDTI ATGAA 1 cut(s) 78
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 72
XspI CTAG 2 cut(s) 143, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.