Rh2DG361500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0021621
Physical Location & Seq
Reverse (-)
51088855 .. 51090017
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG361500.1

Sequence Viewer

Length: 219 bp
ATGCCGGAAATCCCTGATGGAGTATTGTGTGCATTTTTGCAGTGTGGGATCCCTGATCAGAATGAAGAAAGGTCCTTCTTCTGCTACATTCAATCCGTCTCGCGTCTCTCAGCTCTCATGGAATCCCAGGCCAAAGATAAGCTAGAGGTGTCCATGGTGGCTAACAATGAGTCTAGTATGAGTAGAAGAGGCAGAGCCCTACTACGAGAAGAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.17

Weight (kDa)

5.02

Isoelectric Point (pI)

70.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021621)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000449.1_g000010
rosa_rugosa Rorug02G0284100
rosa_samantha Rh2AG336600 Rh2CG323900 Rh2DG361500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 103
AclWI GGATC 2 cut(s) 43, 56
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 2 cut(s) 113, 142
AluI AGCT 2 cut(s) 113, 142
Alw26I GTCTC 2 cut(s) 103, 110
AlwI GGATC 2 cut(s) 43, 56
AoxI GGCC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 72
AvaII GGWCC 1 cut(s) 72
BamHI GGATCC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 199
BccI CCATC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 103, 110
BfaI CTAG 2 cut(s) 143, 174
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 126, 153
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 126, 153
BseMII CTCAG 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 5
BsmAI GTCTC 2 cut(s) 103, 110
BsmBI CGTCTC 2 cut(s) 103, 110
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 48, 55
Bsp19I CCATGG 1 cut(s) 153
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 122
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 2 cut(s) 43, 56
BssECI CCNNGG 2 cut(s) 126, 153
BssMI GATC 2 cut(s) 48, 55
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 109
BstDSI CCRYGG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 103
BstKTI GATC 2 cut(s) 51, 58
BstMAI GTCTC 2 cut(s) 103, 110
BstMBI GATC 2 cut(s) 48, 55
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstUI CGCG 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 72
CseI GACGC 1 cut(s) 92
CviAII CATG 2 cut(s) 118, 154
CviJI RGCY 5 cut(s) 113, 131, 142, 161, 197
CviKI_1 RGCY 5 cut(s) 113, 131, 142, 161, 197
DdeI CTNAG 1 cut(s) 109
DpnI GATC 2 cut(s) 50, 57
DpnII GATC 2 cut(s) 48, 55
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 153
Esp3I CGTCTC 2 cut(s) 103, 110
FaeI CATG 2 cut(s) 121, 157
FaiI YATR 3 cut(s) 119, 155, 179
FatI CATG 2 cut(s) 117, 153
FbaI TGATCA 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 199
FspBI CTAG 2 cut(s) 143, 174
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 121, 157
HinfI GANTC 2 cut(s) 122, 170
HpaII CCGG 1 cut(s) 5
Hpy188I TCNGA 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 32, 40
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 2 cut(s) 121, 157
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 48, 55
LpnPI CCDG 5 cut(s) 18, 27, 66, 113, 140
MaeI CTAG 2 cut(s) 143, 174
MalI GATC 2 cut(s) 50, 57
MboI GATC 2 cut(s) 48, 55
MboII GAAGA 3 cut(s) 70, 77, 198
MflI RGATCY 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 199
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 2 cut(s) 139, 182
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 1 cut(s) 103
NcoI CCATGG 1 cut(s) 153
NdeII GATC 2 cut(s) 48, 55
NlaIII CATG 2 cut(s) 121, 157
NlaIV GGNNCC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 122
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 72
PspPPI RGGWCCY 1 cut(s) 72
PsuI RGATCY 1 cut(s) 48
Sau3AI GATC 2 cut(s) 48, 55
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 199
SetI ASST 4 cut(s) 74, 115, 144, 150
SinI GGWCC 1 cut(s) 72
SspMI CTAG 2 cut(s) 143, 174
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 153
TfiI GAWTC 1 cut(s) 122
TscAI CASTG 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 78
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 72
XspI CTAG 2 cut(s) 143, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.