Rh2CG323900

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0021621
Physical Location & Seq
Reverse (-)
41710053 .. 41727407
17355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG323900.1

Sequence Viewer

Length: 621 bp
ATGATGCTGCTGCTTAACCAGCCCCATGCTAATCTATGGGCAGCCGAGTTATTTTCAATTGTTGGTGGTGTAGAAGGAACGAGTTCTAATCATGATAGTCAGAAATGTGTGCAGAACCAAGCAGAGTCTTCTCTTTTCATTGAGGAAGATGAGCTCGTTGGGATTGAAGAGGAGAAGAGCATGTTATTGATGTTAATACAATTGCTGATGAATGAGGAGAAAAACCAGAAAATCATCTCAGTGGTCGGGATGGAAGGATCTGGGAAGACCACTCTTGTTGCCAAGAGCTGCACTAATGAAATGTGTGGGATCCCTGGTCAGAAGGAAGAAAGGTCCTTCTTCTGCTACATTCCATTCGTCTCGCGTCTCTCAGCTCTCATGGAATCCCAGGCCAAAGATAAGCTAGAGGTGTCCATGGTGGCTGACAATGAGTCTGGCAGAAGGGGTCGGATTGGCTGCCCCAAGTTGACGAAGAATCAATCAATCATATATGTTCATGTGCAACAGCAGAAGAAGGTGGCCTGGGGGGAGGCCCCCATGGAAAAGAAAGACGACCTGCGACCTTCTGCTGCTGCTTCTTCTTCTTCTGCAGTATGTGGTGAGGTCCTTCTAGGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

206

Amino Acids

22.6

Weight (kDa)

5.22

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021621)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000449.1_g000010
rosa_rugosa Rorug02G0284100
rosa_samantha Rh2AG336600 Rh2CG323900 Rh2DG361500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 564
AccII CGCG 1 cut(s) 364
AclWI GGATC 3 cut(s) 265, 304, 317
AgsI TTSAA 2 cut(s) 57, 167
AhdI GACNNNNNGTC 1 cut(s) 430
AjnI CCWGG 3 cut(s) 313, 387, 521
AluBI AGCT 4 cut(s) 154, 288, 374, 403
AluI AGCT 4 cut(s) 154, 288, 374, 403
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 364, 371
AlwI GGATC 3 cut(s) 265, 304, 317
AoxI GGCC 3 cut(s) 390, 519, 531
ApeKI GCWGC 7 cut(s) 7, 10, 41, 288, 456, 569, 572
Asp700I GAANNNNTTC 1 cut(s) 82
AspS9I GGNCC 3 cut(s) 333, 532, 604
AsuHPI GGTGA 1 cut(s) 611
AvaII GGWCC 2 cut(s) 333, 604
BamHI GGATCC 1 cut(s) 309
BanII GRGCYC 1 cut(s) 156
BbsI GAAGAC 2 cut(s) 120, 272
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 5 cut(s) 53, 275, 443, 556, 559
BccI CCATC 1 cut(s) 244
BciT130I CCWGG 3 cut(s) 315, 389, 523
BcoDI GTCTC 2 cut(s) 364, 371
BfaI CTAG 2 cut(s) 404, 611
BfmI CTRYAG 1 cut(s) 588
BfuAI ACCTGC 1 cut(s) 564
BisI GCNGC 7 cut(s) 8, 11, 42, 289, 457, 570, 573
BlsI GCNGC 7 cut(s) 9, 12, 43, 290, 458, 571, 574
Bme1390I CCNGG 3 cut(s) 315, 389, 523
Bme18I GGWCC 2 cut(s) 333, 604
BmeRI GACNNNNNGTC 1 cut(s) 430
BmgT120I GGNCC 3 cut(s) 333, 532, 604
BmiI GGNNCC 2 cut(s) 311, 534
BmrFI CCNGG 3 cut(s) 315, 389, 523
BpiI GAAGAC 2 cut(s) 120, 272
BsaJI CCNNGG 5 cut(s) 313, 387, 414, 522, 537
BseBI CCWGG 3 cut(s) 315, 389, 523
BseDI CCNNGG 5 cut(s) 313, 387, 414, 522, 537
BseGI GGATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 252, 384
BseRI GAGGAG 2 cut(s) 185, 230
BseXI GCAGC 5 cut(s) 53, 275, 443, 556, 559
BsgI GTGCAG 2 cut(s) 131, 274
Bsh1236I CGCG 1 cut(s) 364
BshFI GGCC 3 cut(s) 392, 521, 533
BsiHKAI GWGCWC 1 cut(s) 156
BsmAI GTCTC 2 cut(s) 364, 371
BsmBI CGTCTC 2 cut(s) 364, 371
BsnI GGCC 3 cut(s) 392, 521, 533
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 257, 309
Bsp19I CCATGG 2 cut(s) 414, 537
BspANI GGCC 3 cut(s) 392, 521, 533
BspCNI CTCAG 2 cut(s) 251, 383
BspFNI CGCG 1 cut(s) 364
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 311, 534
BspMAI CTGCAG 1 cut(s) 592
BspMI ACCTGC 1 cut(s) 564
BspPI GGATC 3 cut(s) 265, 304, 317
BspQI GCTCTTC 1 cut(s) 170
BssECI CCNNGG 5 cut(s) 313, 387, 414, 522, 537
BssMI GATC 2 cut(s) 257, 309
BssT1I CCWWGG 2 cut(s) 414, 537
Bst2UI CCWGG 3 cut(s) 315, 389, 523
Bst4CI ACNGT 1 cut(s) 618
Bst6I CTCTTC 2 cut(s) 162, 170
BstDEI CTNAG 2 cut(s) 238, 370
BstDSI CCRYGG 2 cut(s) 414, 537
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 364
BstKTI GATC 2 cut(s) 260, 312
BstMAI GTCTC 2 cut(s) 364, 371
BstMBI GATC 2 cut(s) 257, 309
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 3 cut(s) 315, 389, 523
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 3 cut(s) 313, 387, 521
BstSFI CTRYAG 1 cut(s) 588
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 5 cut(s) 53, 275, 443, 556, 559
BstV2I GAAGAC 2 cut(s) 120, 272
BstX2I RGATCY 2 cut(s) 257, 309
BstYI RGATCY 2 cut(s) 257, 309
BsuRI GGCC 3 cut(s) 392, 521, 533
BtgI CCRYGG 2 cut(s) 414, 537
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 1 cut(s) 564
CciI TCATGA 1 cut(s) 91
Cfr13I GGNCC 3 cut(s) 333, 532, 604
CseI GACGC 1 cut(s) 353
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 7 cut(s) 26, 92, 181, 379, 415, 497, 538
DdeI CTNAG 2 cut(s) 238, 370
DpnI GATC 2 cut(s) 259, 311
DpnII GATC 2 cut(s) 257, 309
DriI GACNNNNNGTC 1 cut(s) 430
Eam1104I CTCTTC 2 cut(s) 162, 170
Eam1105I GACNNNNNGTC 1 cut(s) 430
EarI CTCTTC 2 cut(s) 162, 170
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 414, 537
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 333, 604
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoO109I RGGNCCY 3 cut(s) 333, 532, 604
EcoRII CCWGG 3 cut(s) 313, 387, 521
EcoT14I CCWWGG 2 cut(s) 414, 537
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 2 cut(s) 414, 537
Esp3I CGTCTC 2 cut(s) 364, 371
FaeI CATG 7 cut(s) 29, 95, 184, 382, 418, 500, 541
FatI CATG 7 cut(s) 25, 91, 180, 378, 414, 496, 537
Fnu4HI GCNGC 7 cut(s) 8, 11, 42, 289, 457, 570, 573
FokI GGATG 1 cut(s) 262
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 7 cut(s) 8, 11, 42, 289, 457, 570, 573
FspBI CTAG 2 cut(s) 404, 611
GluI GCNGC 7 cut(s) 8, 11, 42, 289, 457, 570, 573
HaeIII GGCC 3 cut(s) 392, 521, 533
HgaI GACGC 1 cut(s) 353
Hin1II CATG 7 cut(s) 29, 95, 184, 382, 418, 500, 541
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HinfI GANTC 4 cut(s) 125, 383, 431, 475
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 3 cut(s) 102, 321, 450
Hpy188III TCNNGA 2 cut(s) 92, 247
Hpy8I GTNNAC 1 cut(s) 468
HpyAV CCTTC 8 cut(s) 68, 248, 316, 346, 435, 508, 573, 617
HpyCH4III ACNGT 1 cut(s) 618
HpyCH4V TGCA 4 cut(s) 112, 291, 502, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 2 cut(s) 238, 370
Hsp92II CATG 7 cut(s) 29, 95, 184, 382, 418, 500, 541
Kzo9I GATC 2 cut(s) 257, 309
LguI GCTCTTC 1 cut(s) 170
Lsp1109I GCAGC 5 cut(s) 53, 275, 443, 556, 559
MaeI CTAG 2 cut(s) 404, 611
MalI GATC 2 cut(s) 259, 311
MboI GATC 2 cut(s) 257, 309
MfeI CAATTG 2 cut(s) 57, 200
MflI RGATCY 2 cut(s) 257, 309
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 57, 200
MlyI GAGTC 2 cut(s) 134, 440
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 6 cut(s) 136, 163, 208, 400, 523, 595
MroXI GAANNNNTTC 1 cut(s) 82
MseI TTAA 2 cut(s) 15, 194
MslI CAYNNNNRTG 1 cut(s) 239
MspR9I CCNGG 3 cut(s) 315, 389, 523
MunI CAATTG 2 cut(s) 57, 200
MvaI CCWGG 3 cut(s) 315, 389, 523
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 19
NcoI CCATGG 2 cut(s) 414, 537
NdeII GATC 2 cut(s) 257, 309
NlaIII CATG 7 cut(s) 29, 95, 184, 382, 418, 500, 541
NlaIV GGNNCC 2 cut(s) 311, 534
NmeAIII GCCGAG 1 cut(s) 70
NspI RCATGY 1 cut(s) 184
PagI TCATGA 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 82
PfeI GAWTC 2 cut(s) 383, 475
PkrI GCNGC 7 cut(s) 9, 12, 43, 290, 458, 571, 574
PleI GAGTC 2 cut(s) 133, 439
PpsI GAGTC 2 cut(s) 133, 439
PpuMI RGGWCCY 2 cut(s) 333, 604
Psp124BI GAGCTC 1 cut(s) 156
Psp5II RGGWCCY 2 cut(s) 333, 604
Psp6I CCWGG 3 cut(s) 313, 387, 521
PspGI CCWGG 3 cut(s) 313, 387, 521
PspN4I GGNNCC 2 cut(s) 311, 534
PspPI GGNCC 3 cut(s) 333, 532, 604
PspPPI RGGWCCY 2 cut(s) 333, 604
PstI CTGCAG 1 cut(s) 592
PsuI RGATCY 2 cut(s) 257, 309
RseI CAYNNNNRTG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 2 cut(s) 15, 194
SatI GCNGC 7 cut(s) 8, 11, 42, 289, 457, 570, 573
Sau3AI GATC 2 cut(s) 257, 309
Sau96I GGNCC 3 cut(s) 333, 532, 604
SchI GAGTC 2 cut(s) 134, 440
ScrFI CCNGG 3 cut(s) 315, 389, 523
SduI GDGCHC 1 cut(s) 156
SfcI CTRYAG 1 cut(s) 588
SinI GGWCC 2 cut(s) 333, 604
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 2 cut(s) 57, 200
SspMI CTAG 2 cut(s) 404, 611
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 313, 387, 521
StyI CCWWGG 2 cut(s) 414, 537
TaaI ACNGT 1 cut(s) 618
TasI AATT 2 cut(s) 57, 200
TfiI GAWTC 2 cut(s) 383, 475
Tru1I TTAA 2 cut(s) 15, 194
Tru9I TTAA 2 cut(s) 15, 194
TscAI CASTG 1 cut(s) 246
TseI GCWGC 7 cut(s) 7, 10, 41, 288, 456, 569, 572
TspDTI ATGAA 4 cut(s) 127, 224, 312, 485
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 2 cut(s) 333, 604
XceI RCATGY 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 2 cut(s) 404, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.