Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000467.1

Orthogroup ID

OG0020018

Physical Location & Seq

Genomic Coordinates Reverse (-)

65823 .. 66227

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgatcttagttaggaatactaatgcaatggatgacagtaaaggtataggaattgcagagctttccaagtactttggcgcttattcatataagaaaggaaaacaattgtatggccgtcaaggacaccgtgggatgagcattttaatttttgataagtcgctaaggggtttcttagaggcaaagcgtttggagaaggatcttacagatcaaggatctggaagggatgattggaccgagcacgctgttgatgcttctggtaagcaattgctttatggtaacatgccaaatgaagaagatttgattacattcaaatcgaaggtgaaatatgagatcaagtcattgcagcagatcgttcaagaggagaaggatcaatcgaaagattatagttcagaagtacaatgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010050 GO:0010166 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0030677 GO:0030681 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0098542 GO:0098586 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XS zf-XS

Protein Analysis

134

Amino Acids

15.28

Weight (kDa)

6.74

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XS	PF03468	2 - 100	3.2e-17	XS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020018)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000019815
rosa_multiflora	Rmu_ssc0000467.1_g000020
rosa_roxburghii	Rroxscaffold_4G00322090
rosa_samantha	Rh1AG088900 Rh1AG089000 Rh6BG159300 Rh6DG144700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	204, 220, 375
AcoI	YGGCCR	1 cut(s)	112
AfaI	GTAC	2 cut(s)	71, 396
AgsI	TTSAA	2 cut(s)	310, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	211, 243
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	3 cut(s)	204, 220, 375
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	1 cut(s)	344
BlsI	GCNGC	1 cut(s)	345
BmcAI	AGTACT	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmsI	GCATC	1 cut(s)	238
Bpu10I	CCTNAGC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	127
Bse3DI	GCAATG	2 cut(s)	33, 338
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	3 cut(s)	37, 138, 229
BseMI	GCAATG	2 cut(s)	33, 338
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	7 cut(s)	3, 196, 205, 212, 330, 348, 367
BspANI	GGCC	1 cut(s)	114
BspPI	GGATC	3 cut(s)	204, 220, 375
BsrDI	GCAATG	2 cut(s)	33, 338
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	7 cut(s)	3, 196, 205, 212, 330, 348, 367
Bst4CI	ACNGT	2 cut(s)	38, 128
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	3 cut(s)	7, 161, 172
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	3 cut(s)	37, 138, 229
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	7 cut(s)	6, 199, 208, 215, 333, 351, 370
BstMBI	GATC	7 cut(s)	3, 196, 205, 212, 330, 348, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	196, 212
BstYI	RGATCY	2 cut(s)	196, 212
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	37, 138, 229
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	70, 395
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	2 cut(s)	61, 114
CviKI_1	RGCY	2 cut(s)	61, 114
CviQI	GTAC	2 cut(s)	70, 395
DdeI	CTNAG	3 cut(s)	7, 161, 172
DpnI	GATC	7 cut(s)	5, 198, 207, 214, 332, 350, 369
DpnII	GATC	7 cut(s)	3, 196, 205, 212, 330, 348, 367
EaeI	YGGCCR	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	231
FaeI	CATG	1 cut(s)	283
FaiI	YATR	8 cut(s)	47, 88, 90, 111, 273, 281, 327, 384
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	344
FokI	GGATG	3 cut(s)	44, 145, 236
Fsp4HI	GCNGC	1 cut(s)	344
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	344
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HphI	GGTGA	1 cut(s)	331
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	2 cut(s)	216, 356
HpyAV	CCTTC	4 cut(s)	187, 213, 310, 358
HpyCH4III	ACNGT	2 cut(s)	38, 128
HpyCH4V	TGCA	3 cut(s)	26, 56, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	3 cut(s)	7, 161, 172
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	7 cut(s)	3, 196, 205, 212, 330, 348, 367
LpnPI	CCDG	2 cut(s)	201, 240
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	7 cut(s)	5, 198, 207, 214, 332, 350, 369
MboI	GATC	7 cut(s)	3, 196, 205, 212, 330, 348, 367
MboII	GAAGA	2 cut(s)	302, 305
MfeI	CAATTG	2 cut(s)	104, 263
MflI	RGATCY	2 cut(s)	196, 212
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	4 cut(s)	51, 104, 144, 263
MnlI	CCTC	2 cut(s)	169, 352
MseI	TTAA	1 cut(s)	143
MunI	CAATTG	2 cut(s)	104, 263
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	7 cut(s)	3, 196, 205, 212, 330, 348, 367
NlaIII	CATG	1 cut(s)	283
NspI	RCATGY	1 cut(s)	283
PkrI	GCNGC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	231
PsuI	RGATCY	2 cut(s)	196, 212
RsaI	GTAC	2 cut(s)	71, 396
RsaNI	GTAC	2 cut(s)	70, 395
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	344
Sau3AI	GATC	7 cut(s)	3, 196, 205, 212, 330, 348, 367
Sau96I	GGNCC	1 cut(s)	231
ScaI	AGTACT	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	3 cut(s)	46, 63, 321
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	231
Sse9I	AATT	4 cut(s)	51, 104, 144, 263
TaaI	ACNGT	2 cut(s)	38, 128
TaqI	TCGA	2 cut(s)	314, 374
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	4 cut(s)	51, 104, 144, 263
TatI	WGTACW	2 cut(s)	69, 394
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseI	GCWGC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	75, 303
VpaK11BI	GGWCC	1 cut(s)	231
XceI	RCATGY	1 cut(s)	283
ZrmI	AGTACT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.