Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0020018

Physical Location & Seq

Genomic Coordinates Reverse (-)

52029173 .. 52029972

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAATGAAAGTAAAGGTATGGGAATTGTGGAGCTTTCCAAGTACTTTGGCGCTTATTCATATAAGAAAGGAAAACAATCGTATGGCCGTCAGGGACACCGTGGGATGAGCATTTTAATTTTTGATAAGTTGCAAAGGGGTTTCTTAGAGGCAAAGTGTCTTGAGAGGGATCTTGCAGATCAAGGATCTGGAAGGGATGATTGGACCGGGCACGCTGTTGATGCTTCTGGTAAGCGATTGCTTTATGGTTACATGCCAAATGAAGAAGATTTGATTACATTCAAATCAAAGGTGAAATATGAGATCAAGTCATTGCAGCAGATCGTTCAAAAGGAGAAGGATCAATCAGAAGATTATGGTTCAGAACATGTAGCAACTGAAGCAAACTTGAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0070013 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XS zf-XS

Protein Analysis

132

Amino Acids

14.95

Weight (kDa)

6.83

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XS	PF03468	3 - 91	1.6e-15	XS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020018)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000019815
rosa_multiflora	Rmu_ssc0000467.1_g000020
rosa_roxburghii	Rroxscaffold_4G00322090
rosa_samantha	Rh1AG088900 Rh1AG089000 Rh6BG159300 Rh6DG144700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	177, 193, 348
AcoI	YGGCCR	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	2 cut(s)	44, 394
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	283, 329
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
AlwI	GGATC	3 cut(s)	177, 193, 348
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	328
BceAI	ACGGC	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	208
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
BmcAI	AGTACT	2 cut(s)	44, 394
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	2 cut(s)	111, 202
BseMI	GCAATG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	328
BshFI	GGCC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	6 cut(s)	169, 178, 185, 303, 321, 340
BspANI	GGCC	1 cut(s)	87
BspPI	GGATC	3 cut(s)	177, 193, 348
BsrDI	GCAATG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	6 cut(s)	169, 178, 185, 303, 321, 340
Bst4CI	ACNGT	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	111, 202
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	6 cut(s)	172, 181, 188, 306, 324, 343
BstMBI	GATC	6 cut(s)	169, 178, 185, 303, 321, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 380
BstNSI	RCATGY	2 cut(s)	256, 371
BstSCI	CCNGG	1 cut(s)	206
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	2 cut(s)	169, 185
BstYI	RGATCY	2 cut(s)	169, 185
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	111, 202
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	43, 393
CviAII	CATG	2 cut(s)	253, 368
CviJI	RGCY	2 cut(s)	34, 87
CviKI_1	RGCY	2 cut(s)	34, 87
CviQI	GTAC	2 cut(s)	43, 393
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	6 cut(s)	171, 180, 187, 305, 323, 342
DpnII	GATC	6 cut(s)	169, 178, 185, 303, 321, 340
EaeI	YGGCCR	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	399
FaeI	CATG	2 cut(s)	256, 371
FaiI	YATR	9 cut(s)	20, 61, 63, 84, 246, 254, 300, 357, 369
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	2 cut(s)	252, 367
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	2 cut(s)	118, 209
Fsp4HI	GCNGC	1 cut(s)	317
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	256, 371
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	349, 364
Hpy188III	TCNNGA	2 cut(s)	161, 189
HpyAV	CCTTC	2 cut(s)	186, 331
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	3 cut(s)	133, 176, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 380
HpyF3I	CTNAG	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	256, 371
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	6 cut(s)	169, 178, 185, 303, 321, 340
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	4 cut(s)	77, 174, 213, 220
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	6 cut(s)	171, 180, 187, 305, 323, 342
MboI	GATC	6 cut(s)	169, 178, 185, 303, 321, 340
MboII	GAAGA	3 cut(s)	275, 278, 362
MflI	RGATCY	2 cut(s)	169, 185
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	24, 117
MnlI	CCTC	2 cut(s)	142, 159
MseI	TTAA	1 cut(s)	116
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	221, 380
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	6 cut(s)	169, 178, 185, 303, 321, 340
NlaIII	CATG	2 cut(s)	256, 371
NspI	RCATGY	2 cut(s)	256, 371
PciI	ACATGT	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	318
PscI	ACATGT	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	204
PsuI	RGATCY	2 cut(s)	169, 185
RsaI	GTAC	2 cut(s)	44, 394
RsaNI	GTAC	2 cut(s)	43, 393
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	6 cut(s)	169, 178, 185, 303, 321, 340
Sau96I	GGNCC	1 cut(s)	204
ScaI	AGTACT	2 cut(s)	44, 394
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	3 cut(s)	19, 36, 294
SfaNI	GCATC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	161, 388
SmoI	CTYRAG	2 cut(s)	161, 388
Sse9I	AATT	2 cut(s)	24, 117
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	101
TasI	AATT	2 cut(s)	24, 117
TatI	WGTACW	2 cut(s)	42, 392
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TseI	GCWGC	1 cut(s)	316
TspDTI	ATGAA	4 cut(s)	17, 21, 48, 276
VpaK11BI	GGWCC	1 cut(s)	204
XceI	RCATGY	2 cut(s)	256, 371
ZrmI	AGTACT	2 cut(s)	44, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.